BAC Information

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BAC

Clone NameB6Ng01-133J18
Chromosome16 (Build37)
Map Location 60,580,738 - 60,688,401
singlet/doubletdoublet
Overlap geneEpha6, EG668168, LOC668170
Upstream geneLOC672884, Arl6, LOC100043804
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133J18.bB6Ng01-133J18.g
ACCDH934112DH934113
length1,1041,011
definitionDH934112|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J18, 5' end.DH934113|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,687,287 - 60,688,401)(60,580,738 - 60,581,641)
sequence
gaattccacatatctgtgcatacagagtggcaaaaatggacccataacca
tcatgtgttaggaccaagggaaatagaactatattagatatgtgttttgg
actcaacattttagcattagcaattaagaagttattgggagtagtttatt
cagagattatgtgatcaacattgtctctcaaagtccaataaaataattat
ggaataattgtgaagtatatacatatgcacatatataataaaagatttat
taaagattgacaaacttcaatatttcacataatgagttaagttttaggca
cattttacaatctacaactaatttatatataaaactactttcttcagagt
attatcatttctatgcctatgaattttaatatcatgttgttataaggaat
taatgtttaacattattgcacatttgccaaaaagatatactttcaattca
ttctattataggcagattttcaaaaaaaaaaatacactatcactagcaat
aactttctgttactggcacaaactttttggaatgatttgattctgtttgc
acgtatttagttccatcatcaatactatatcatgaaagcatggatccact
cacttacagtttgtgtattattctgtaaaatattgttggtccacatgata
tttaacacgcgtctatgaaatgaagcttcttgtctttggcttttgcagta
gaaaatgaatgaatgtggtggctcatataactaaatcaggagttagagtc
atcacatcatctgactatttatatattgctttttcatagtaaactcataa
aacataaattagactacttcgttaataaaaatgacaccaaaaaaggtaga
aaaaaaattcttgtttttcagtttgcttgtttcctatgcaggatctccat
atgtagtctaagcagactttgatctcagtatctttcctccttagctaaca
aatgctggtgctacgggagtatgcctgctacagttgactcaattaacttt
aagtgtgaatttaaatgctaactacacatctgatctttagacgatcagaa
atgtcacatgacaagactgctcctaggaaagtgtttcagggactgagcac
caaa
gaattcctatctcctttgagcccataatcctttctcctattcttccatat
gagtcccaagttcaatccactgctggctgtcggtgtctatatctgtctga
gtcagctgctgggtggaacctctcaggggacaacgtgctacaggtataca
tttattgctaaatatatattaaaactttagagaaatcatacttattcctt
agtggtttttggattaaatattttcacatcaaagtaaattattactgcct
ctttattttgttttaatttagagcattttattgtgttttaataatacaat
aaacaaaaaagcatttacttgaaattgttccataatcatttttaattagt
gaaaatattgtatcccggtgcataggaaccaaaataatactattgggaaa
ataaaacctgtgatgatttgctttcaattgtcaacttgacataatctaaa
atagcataagagaagagcctcaaagacatctgtgggattatcttgattat
agtaactgaagaaagcagatctactccaactgagagcagacccacattac
tatttcatggactggggcctggaccaaaggaatagaagaaagctagctga
gctacaacggaatgctttacttgaccctgctctgactgcagatgtagtct
gacagtctcccagtctgctactgctgactgctctgccaaaatggaatgtt
acctagaactggggcatgagtataaccttccttcctcaagttatttttgt
taaggtactttattacagcaatgggaaagaaaactaagacatataatggt
aaggagaattgaggtcattgctgtaataaacctgatgatgtgccttttta
gcctttggacctgttctgttgaagaaacatagaagagtttggaactttgg
actggaaaagctggtatcctcattgtcagagtttaattggccaaacccgg
agacactgaaagctggtactgctaggaaaagagactgtaaaggtctgaga
tgattaggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60687287_60688401
seq2: B6Ng01-133J18.b_43_1146 (reverse)

seq1  TTTGTGTGCTCAAGTCCCTGGAGACACTTTTCCTAGGGAGCAGTCTTGTC  50
      |||| |||||| ||||||| || |||| ||||||| ||||||||||||||
seq2  TTTG-GTGCTC-AGTCCCT-GAAACAC-TTTCCTA-GGAGCAGTCTTGTC  45

seq1  ATGTGACAATTTCTGATCCGTCCTAAAGATCAGATGTTGTAGTTAGCATT  100
      ||||||| ||||||||| ||| |||||||||||||| |||||||||||||
seq2  ATGTGAC-ATTTCTGAT-CGT-CTAAAGATCAGATG-TGTAGTTAGCATT  91

seq1  TAAATTCAACACTTAAAAGTTAATTGAGTCAACCTGTAGCAGGCATACTC  150
      ||||||| |||||| ||||||||||||||||| |||||||||||||||||
seq2  TAAATTC-ACACTT-AAAGTTAATTGAGTCAA-CTGTAGCAGGCATACTC  138

seq1  CCGTAGCACCAGCATTTGTTAGCTAAGGAGG-AAGATACTGAGATCAAAG  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGTAGCACCAGCATTTGTTAGCTAAGGAGGAAAGATACTGAGATCAAAG  188

seq1  TCTGCTTAGACTACATATGGAGATCCTGCATAGGAAACAAGCAAACTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTAGACTACATATGGAGATCCTGCATAGGAAACAAGCAAACTGAA  238

seq1  AAACAAGAATTTTTTTTCTACCTTTTTTGGTGTCATTTTTATTAACGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAATTTTTTTTCTACCTTTTTTGGTGTCATTTTTATTAACGAAG  288

seq1  TAGTCTAATTTATGTTTTATGAGTTTACTATGAAAAAGCAATATATAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAATTTATGTTTTATGAGTTTACTATGAAAAAGCAATATATAAAT  338

seq1  AGTCAGATGATGTGATGACTCTAACTCCTGATTTAGTTATATGAGCCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATGATGTGATGACTCTAACTCCTGATTTAGTTATATGAGCCACC  388

seq1  ACATTCATTCATTTTCTACTGCAAAAGCCAAAGACAAGAAGCTTCATTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATTCATTTTCTACTGCAAAAGCCAAAGACAAGAAGCTTCATTTC  438

seq1  ATAGACGCGTGTTAAATATCATGTGGACCAACAATATTTTACAGAATAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACGCGTGTTAAATATCATGTGGACCAACAATATTTTACAGAATAAT  488

seq1  ACACAAACTGTAAGTGAGTGGATCCATGCTTTCATGATATAGTATTGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACTGTAAGTGAGTGGATCCATGCTTTCATGATATAGTATTGATG  538

seq1  ATGGAACTAAATACGTGCAAACAGAATCAAATCATTCCAAAAAGTTTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTAAATACGTGCAAACAGAATCAAATCATTCCAAAAAGTTTGTG  588

seq1  CCAGTAACAGAAAGTTATTGCTAGTGATAGTGTATTTTTTTTTTTGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAACAGAAAGTTATTGCTAGTGATAGTGTATTTTTTTTTTTGAAAA  638

seq1  TCTGCCTATAATAGAATGAATTGAAAGTATATCTTTTTGGCAAATGTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTATAATAGAATGAATTGAAAGTATATCTTTTTGGCAAATGTGCA  688

seq1  ATAATGTTAAACATTAATTCCTTATAACAACATGATATTAAAATTCATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTAAACATTAATTCCTTATAACAACATGATATTAAAATTCATAG  738

seq1  GCATAGAAATGATAATACTCTGAAGAAAGTAGTTTTATATATAAATTAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAATGATAATACTCTGAAGAAAGTAGTTTTATATATAAATTAGT  788

seq1  TGTAGATTGTAAAATGTGCCTAAAACTTAACTCATTATGTGAAATATTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTGTAAAATGTGCCTAAAACTTAACTCATTATGTGAAATATTGA  838

seq1  AGTTTGTCAATCTTTAATAAATCTTTTATTATATATGTGCATATGTATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTCAATCTTTAATAAATCTTTTATTATATATGTGCATATGTATAT  888

seq1  ACTTCACAATTATTCCATAATTATTTTATTGGACTTTGAGAGACAATGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACAATTATTCCATAATTATTTTATTGGACTTTGAGAGACAATGTT  938

seq1  GATCACATAATCTCTGAATAAACTACTCCCAATAACTTCTTAATTGCTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATAATCTCTGAATAAACTACTCCCAATAACTTCTTAATTGCTAA  988

seq1  TGCTAAAATGTTGAGTCCAAAACACATATCTAATATAGTTCTATTTCCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATGTTGAGTCCAAAACACATATCTAATATAGTTCTATTTCCCT  1038

seq1  TGGTCCTAACACATGATGGTTATGGGTCCATTTTTGCCACTCTGTATGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTAACACATGATGGTTATGGGTCCATTTTTGCCACTCTGTATGCA  1088

seq1  CAGATATGTGGAATTC  1115
      ||||||||||||||||
seq2  CAGATATGTGGAATTC  1104

seq1: chr16_60580738_60581641
seq2: B6Ng01-133J18.g_66_969

seq1  GAATTCCTATCTCCTTTGAGCCCATAATCCTTTCTCCTATTCTTCCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTCCTTTGAGCCCATAATCCTTTCTCCTATTCTTCCATAT  50

seq1  GAGTCCCAAGTTCAATCCACTGCTGGCTGTCGGTGTCTATATCTGTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAAGTTCAATCCACTGCTGGCTGTCGGTGTCTATATCTGTCTGA  100

seq1  GTCAGCTGCTGGGTGGAACCTCTCAGGGGACAACGTGCTACAGGTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGCTGGGTGGAACCTCTCAGGGGACAACGTGCTACAGGTATACA  150

seq1  TTTATTGCTAAATATATATTAAAACTTTAGAGAAATCATACTTATTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTAAATATATATTAAAACTTTAGAGAAATCATACTTATTCCTT  200

seq1  AGTGGTTTTTGGATTAAATATTTTCACATCAAAGTAAATTATTACTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTTTGGATTAAATATTTTCACATCAAAGTAAATTATTACTGCCT  250

seq1  CTTTATTTTGTTTTAATTTAGAGCATTTTATTGTGTTTTAATAATACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGTTTTAATTTAGAGCATTTTATTGTGTTTTAATAATACAAT  300

seq1  AAACAAAAAAGCATTTACTTGAAATTGTTCCATAATCATTTTTAATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAGCATTTACTTGAAATTGTTCCATAATCATTTTTAATTAGT  350

seq1  GAAAATATTGTATCCCGGTGCATAGGAACCAAAATAATACTATTGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTGTATCCCGGTGCATAGGAACCAAAATAATACTATTGGGAAA  400

seq1  ATAAAACCTGTGATGATTTGCTTTCAATTGTCAACTTGACATAATCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTGTGATGATTTGCTTTCAATTGTCAACTTGACATAATCTAAA  450

seq1  ATAGCATAAGAGAAGAGCCTCAAAGACATCTGTGGGATTATCTTGATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATAAGAGAAGAGCCTCAAAGACATCTGTGGGATTATCTTGATTAT  500

seq1  AGTAACTGAAGAAAGCAGATCTACTCCAACTGAGAGCAGACCCACATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGAAGAAAGCAGATCTACTCCAACTGAGAGCAGACCCACATTAC  550

seq1  TATTTCATGGACTGGGGCCTGGACCAAAGGAATAGAAGAAAGCTAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATGGACTGGGGCCTGGACCAAAGGAATAGAAGAAAGCTAGCTGA  600

seq1  GCTACAACGGAATGCTTTACTTGACCCTGCTCTGACTGCAGATGTAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAACGGAATGCTTTACTTGACCCTGCTCTGACTGCAGATGTAGTCT  650

seq1  GACAGTCTCCCAGTCTGCTACTGCTGACTGCTCTGCCAAAATGGAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTCCCAGTCTGCTACTGCTGACTGCTCTGCCAAAATGGAATGTT  700

seq1  ACCTAGAACTGGGGCATGAGTATAACCTTCCTTCCTCAAGTTATTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAACTGGGGCATGAGTATAACCTTCCTTCCTCAAGTTATTTTTGT  750

seq1  TAAGGTACTTTATTACAGCAATGGGAAAGAAAACTAAGACATATAATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTACTTTATTACAGCAATGGGAAAGAAAACTAAGACATATAATGGT  800

seq1  AAGGAGAATTGAGGTCATTGCTGTAATAAACCTGATGATGTGCCTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATTGAGGTCATTGCTGTAATAAACCTGATGATGTGCCTTTTTA  850

seq1  GCCTTTGGACCTGTTCTGTTGAAGAAACATAGAAGAGTTTGGAACTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGACCTGTTCTGTTGAAGAAACATAGAAGAGTTTGGAACTTTGG  900

seq1  ACTG  904
      ||||
seq2  ACTG  904