BAC Information

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BAC

Clone NameB6Ng01-134J13
Chromosome16 (Build37)11 (Build37)
Map Location 29,838,657 - 29,838,96744,292,529 - 44,293,625
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J13.bB6Ng01-134J13.g
ACCDH934854DH934855
length8541,083
definitionDH934854|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J13, 5' end.DH934855|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,838,657 - 29,838,967)(44,292,529 - 44,293,625)
sequence
gaattcttattcatccaggggttggggatgtaactccaaggcagaatgct
tgcctagcttagccccaaggtcctgagttagatctccagcatcacaaata
aacaggaaaacagccaacaacctaggaacatcacactctcaaaacgtatt
ttagatagcactgaagtgtacagttacaaacattaaaaaccagtaaatgt
tacctatattttttctgtgtcagaaaaatgtttttttagaggactaaaga
gatggctcagcaattaagagcacatactgctcttacaggatccatgtatg
gctcatagcagccacgtggggcaccttacaactgcctataactgaggctc
cagagaagtctaatacctctcaactacagacacctgcactcagatactca
tatccacaaactagaaataaatatagtgtgtgtgtgtgtgtgtgtgtatt
gttatggtttgtatatgcttggcccaggaagtggcactattaggaggtgt
ggccttgttggagcaggtgtgtcactgtgggtgtgggctttaagaccttc
atcctagggctggtgagatggctcagtggtaagagcacccgactgctctt
ctgaaggtcaggagttcaaatcccagcaaccacatggtggctcacaaccc
atccgtaacgagatctgactccctcttctggagtgtcttgaggacagcta
cagtgtacttacatataataaataaaaaaataaatctttaaaaaaaaaaa
aaagaccctcatcctagctgcctgggaagtgagcattctgctagcaagcc
cttcagatgaggatgtagaactctcagctctcagttagctctcagttagc
tctg
gaattcacttttctggcttaacattgcagtgtgtgtgtgtgtgtgtgtgt
gcaaatgaaataaaatgttcaaagttaaaatgattgcagagtagaagatc
tagagtcgtttaatctcaccattgtattttgtatcaagaggagaaacaaa
gacagtggcagctgaaaaggagttgcagcccaaagtgaaggtgtttcagt
accaagtagtaataccctccttgagttagggagctcttttcttgatgtcc
cagccatagtgagcaaaaatttctttcacaaatatcctctaaaaccaggc
aacaaaatcttggctgatgaggagcacaaggaacttctttgataagctag
gggattttatttgctggtagctggagttcatgcacaatggacttggtggg
tggctccgcaggcatacagcaacagtgctcctcgacagctgtgaagagat
accatgaccacagcaactcttataaaggaaaacatttaatttgggactgg
cttacagtttcagaggttcaacccattatcatcatggtgggaaacatggt
gtgcaggcagacatggtgttggagaaagagctgagagttctaagtcttga
tcagtggggactgtgtaccaccctgggcataacttgaacatagaagatct
caaagcccactaccacagtgacacactttcgccaaaaaaaggccacaact
attccatccaacaaggcatacctcctaatagtgccattccgtatggccaa
gcatttgaacacaagagattatgtctattcaaaccaccaccaatggattc
atggaaatcctcaagagaatatctgtcaggccccagtggaagctccaaac
caggagaaggatcagccaacaggaacttgtgctacagaagttgctggtgg
cacaggtccctgatagcaatctttctgcttcaattgttattaaattaaag
catgtggatttggagaaaggggctttgatagtaaagcagagtttagtata
tggcttgcttttttcttctatcttcccaagacagtgtgagatgctcaatg
tggcttatgaaacaatatgctcacccactctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29838657_29838967
seq2: B6Ng01-134J13.b_605_797 (reverse)

seq1  TTTTTTTTTTTAAAGATTTATTTATTTATTTATTTATTTTATGTATATGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTACACTGTAGCTGTACAGATGTTTGTGAACTCAGGACCTCTACTCGCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGACCCAGCTGGCTCCAGCCCTGCTCATTCCAGCCCAAAGATTTATTT--  148
                           |  |  ||       ||||||||||||  
seq2  ---------------------TTTTTTTT----TTTAAAGATTTATTTTT  25

seq1  ---ATCATTATTTGTAAGTACACTGTAGCTGT-CTTGAGACACACCAGAA  194
          | ||||| |||||||||||||||||||| ||  |||||| ||||||
seq2  TTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAAGACACTCCAGAA  75

seq1  GAGGGCGTCAGATCTCATTATGGAT-GGCTGTGAGCCACCATGTGGTTGC  243
      ||||| |||||||||| ||| |||| || |||||||||||||||||||||
seq2  GAGGGAGTCAGATCTCGTTACGGATGGGTTGTGAGCCACCATGTGGTTGC  125

seq1  TGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTC-AGTGCTCTTACCTG  292
      ||||||||||||||  ||||||| |||||||||||  |||||||||||  
seq2  TGGGATTTGAACTCCTGACCTTCAGAAGAGCAGTCGGGTGCTCTTACC-A  174

seq1  CTGAGCCATCTCACCAGCC  311
      |||||||||||||||||||
seq2  CTGAGCCATCTCACCAGCC  193

seq1: chr11_44292529_44293625
seq2: B6Ng01-134J13.g_68_1150

seq1  GAATTCACTTTTCTGGCTTAACATTGCAGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTCTGGCTTAACATTGCAGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GCAAATGAAATAAAATGTTCAAAGTTAAAATGATTGCAGAGTAGAAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAAATAAAATGTTCAAAGTTAAAATGATTGCAGAGTAGAAGATC  100

seq1  TAGAGTCGTTTAATCTCACCATTGTATTTTGTATCAAGAGGAGAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCGTTTAATCTCACCATTGTATTTTGTATCAAGAGGAGAAACAAA  150

seq1  GACAGTGGCAGCTGAAAAGGAGTTGCAGCCCAAAGTGAAGGTGTTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGCAGCTGAAAAGGAGTTGCAGCCCAAAGTGAAGGTGTTTCAGT  200

seq1  ACCAAGTAGTAATACCCTCCTTGAGTTAGGGAGCTCTTTTCTTGATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTAGTAATACCCTCCTTGAGTTAGGGAGCTCTTTTCTTGATGTCC  250

seq1  CAGCCATAGTGAGCAAAAATTTCTTTCACAAATATCCTCTAAAACCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATAGTGAGCAAAAATTTCTTTCACAAATATCCTCTAAAACCAGGC  300

seq1  AACAAAATCTTGGCTGATGAGGAGCACAAGGAACTTCTTTGATAAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCTTGGCTGATGAGGAGCACAAGGAACTTCTTTGATAAGCTAG  350

seq1  GGGATTTTATTTGCTGGTAGCTGGAGTTCATGCACAATGGACTTGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTATTTGCTGGTAGCTGGAGTTCATGCACAATGGACTTGGTGGG  400

seq1  TGGCTCCGCAGGCATACAGCAACAGTGCTCCTCGACAGCTGTGAAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGCAGGCATACAGCAACAGTGCTCCTCGACAGCTGTGAAGAGAT  450

seq1  ACCATGACCACAGCAACTCTTATAAAGGAAAACATTTAATTTGGGACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCACAGCAACTCTTATAAAGGAAAACATTTAATTTGGGACTGG  500

seq1  CTTACAGTTTCAGAGGTTCAACCCATTATCATCATGGTGGGAAACATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTTTCAGAGGTTCAACCCATTATCATCATGGTGGGAAACATGGT  550

seq1  GTGCAGGCAGACATGGTGTTGGAGAAAGAGCTGAGAGTTCTAAGTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCAGACATGGTGTTGGAGAAAGAGCTGAGAGTTCTAAGTCTTGA  600

seq1  TCAGTGGGGACTGTGTACCACCCTGGGCATAACTTGAACATAGAAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGGACTGTGTACCACCCTGGGCATAACTTGAACATAGAAGATCT  650

seq1  CAAAGCCCACTACCACAGTGACACACTTTCGCCAAAAAAAGGCCACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCACTACCACAGTGACACACTTTCGCCAAAAAAAGGCCACAACT  700

seq1  ATTCCATCCAACAAGGCATACCTCCTAATAGTGCCATTCCGTATGGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCCAACAAGGCATACCTCCTAATAGTGCCATTCCGTATGGCCAA  750

seq1  GCATTTGAACACAAGAGATTATGTCTATTCAAACCACCACCAATGGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGAACACAAGAGATTATGTCTATTCAAACCACCACCAATGGATTC  800

seq1  ATGGAAATCCTCAAGAGAATATCTGTCAGGGCCCAAGTGGAAGCTCCAAA  850
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  ATGGAAATCCTCAAGAGAATATCTGTCA-GGCCCCAGTGGAAGCTCCAAA  849

seq1  CCAGGAGAAGGATCAGCCAACAGGAACTTGTGCTACAGAAGTTGCTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAGGATCAGCCAACAGGAACTTGTGCTACAGAAGTTGCTGGTG  899

seq1  GCAACAGGTCCCTGATAGCCAATCTTTCTGCTTCCAATTGTTATTAAAAT  950
      || ||||||||||||||| |||||||||||||| ||||||||||||||  
seq2  GC-ACAGGTCCCTGATAG-CAATCTTTCTGCTT-CAATTGTTATTAAA--  944

seq1  TAAAAGCATGTGGATTTGGAGAAAAGGGGCTTTGATAGTAAAAGCAGGAG  1000
      | ||||||||||||||||||| ||||||||||||||||| |||||| |||
seq2  TTAAAGCATGTGGATTTGGAG-AAAGGGGCTTTGATAGT-AAAGCA-GAG  991

seq1  TTTAGTATATGGCTGGCTTTTTATCTTCTAATCTTCCCAAAGACAGTGTT  1050
      |||||||||||||| ||||||| |||||| |||||||| |||||||||| 
seq2  TTTAGTATATGGCTTGCTTTTT-TCTTCT-ATCTTCCC-AAGACAGTGT-  1037

seq1  GAAGATGGCTCAATGT-GCTTATGAAAACAATATGCTCA-CCACTCTAA  1097
        |||| ||||||||| ||||||| |||||||||||||| |||||||||
seq2  -GAGAT-GCTCAATGTGGCTTATG-AAACAATATGCTCACCCACTCTAA  1083