BAC Information

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BAC

Clone NameB6Ng01-135G19
Chromosome16 (Build37)
Map Location 92,353,438 - 92,548,627
singlet/doubletdoublet
Overlap geneKcne1, Dscr1, 2410124H12Rik, Clic6
Upstream geneIfnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik
Downstream geneRunx1, EG666023, LOC100040747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135G19.bB6Ng01-135G19.g
ACCDH935462DH935463
length1,177743
definitionDH935462|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G19, 5' end.DH935463|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,547,448 - 92,548,627)(92,353,438 - 92,354,161)
sequence
gaattctgggatagagtcaggcacaggagaacacccaggaagatgtgaca
agacatactaatggtgtctgagcaccagtaacgagccacggggcagagtg
cagattacagtaaatgggttataaaaagttatgatctagtcagggaagag
cctagctatatggccaaggtacttgtagatatattttaagtctgagtcta
ggttggccaaggagcatggggctgggaggaagaactgggacaaaacttct
acaaaatatagtatccttcttgtgattaggtcacatgacagagcaaagga
aatgacagtccctaattcgttgacttgagtatagggactgcaagggtttg
atttgatcagctgattataaaggagagttcctcggatgagcctggactag
tcaagtgagtgcttcaaagggagaccacaagtcagagatacaggagattg
cagagaggtgaggcagtcttaaacaccaggagctgaccttaaaaccttgt
gtgggaatccagctttagccagtaccttcctctcagcctctgtgaccctg
aacaagataagcagttctggaacacaccgacttctagtggattagtcaaa
tctctgtggctaggagcatgtgggaaagcaaaagccacccacctcttagt
gttgagaaagcaagaagatggaagaagggccctcaaaggacacatcccaa
gttgctcacttctcagtcgcctaagcctaccttgctaaacagccttgtac
atttcatcagccccataagcttagcaaccaacactcagcaccacaaagtc
ttccgaggacatctcagagccaaaccaaaatactccccgacgcctgcagc
ctgtggcttataaatacaagtcatgtatgctaagttgatagctttgtggc
ctttgttgcttggtgtagaaaacgattacgtcacgactagggagataaga
gcacttgctgtgcaggcatcaggacctgggtttgaacctccagcacctga
aaaccaggcatggctatgtgtactgtaaactcaatgaagtacaggggtgg
gcaaggggtataaagaggcatttccttggtatctccccaaacagcaagtt
ccgttcaggagagatatcacctcttaaatatattctagagtaaataataa
gtggagagcctgatgcccatctctggc
cggaattaaaaaaagaacagactaacaggatgcactgcaactgtagagga
tgaagctgagttgaagaacatgggtcattgtcaaagggtttttttttttg
ttttttgttttttgtttttgtttttgtttttgtttttgtttttttttttt
tttttttgcactccttgctgcttcttggctgcaggctgaggtgagcctgt
cagttttaactgcaatgctctgcctctgcctcgccatgactcaagcaatg
gcgggcgccaagtaacagttgatcaaaacctccgcagtgtgagccaaggt
aaatctttccagagttgtctctcaggcatttgtttcacaatagaaaaatg
gcttacgccaggaggtcactgggtcttccgaggtcgttggtttttccttc
ccacatggcctccacgactcagagtctttaggtttaggtctcatctcgcc
atggtcgacacggtggctcccttcaggcgttctggagagagctgtcttgg
tgactgagaaatgaagctcattgctctgatcgctggccttttgagtgtgg
gcagaggcctgttaggggtgagaaggccggaaggcacaccatactttcca
aatcctcaacaaagccgaaatctagccccatcctgagcaggggaccaggc
aggagtttttctggaaaaccaatgcatcaaacgctcagagcacagtgggc
tccgaacctgatgggtatcatttttatttccaaaagaaataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92547448_92548627
seq2: B6Ng01-135G19.b_47_1223 (reverse)

seq1  GCCAGAGATGGGCATCAGGGCTTCCCCTCTTAT--TTCTCTCTAGGTTAT  48
      |||||||||||||||||||   || || |||||  ||  ||||||   ||
seq2  GCCAGAGATGGGCATCAGG--CTCTCCACTTATTATTTACTCTAG--AAT  46

seq1  GTATTTAAGAGGCGATCTCTC-ACTGAACGGAAAACTTGCTGTTTTGTGA  97
       ||||||||||| ||| ||||  ||||||||  |||||||||||| | ||
seq2  ATATTTAAGAGGTGATATCTCTCCTGAACGG--AACTTGCTGTTTGGGGA  94

seq1  GATACCAA-GAAATGCCTCTTTCTACCCCTTG-CCACCCCTGTACATCAC  145
      |||||||| ||||||||||||| ||||||||| |||||||||||| ||| 
seq2  GATACCAAGGAAATGCCTCTTTATACCCCTTGCCCACCCCTGTACTTCAT  144

seq1  TGAGTTTACAGTACACATAGCCATGCCTGGTTTTTCAGGTGCTGGAGGTT  195
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGTTTACAGTACACATAGCCATGCCTGG-TTTTCAGGTGCTGGAGGTT  193

seq1  CAAACCCAGGTCCTGATGCCTGCACAGCAAGTGCTCTTATCTCCCTAGTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAGGTCCTGATGCCTGCACAGCAAGTGCTCTTATCTCCCTAGTC  243

seq1  GTGACGTAATCGTTTTCTACACCAAGCAACAAAGGCCACAAAGCTATCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTAATCGTTTTCTACACCAAGCAACAAAGGCCACAAAGCTATCAA  293

seq1  CTTAGCATACATGACTTGTATTTATAAGCCACAGGCTGCAGGCGTCGGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATACATGACTTGTATTTATAAGCCACAGGCTGCAGGCGTCGGGG  343

seq1  AGTATTTTGGTTTGGCTCTGAGATGTCCTCGGAAGACTTTGTGGTGCTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTGGTTTGGCTCTGAGATGTCCTCGGAAGACTTTGTGGTGCTGA  393

seq1  GTGTTGGTTGCTAAGCTTATGGGGCTGATGAAATGTACAAGGCTGTTTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGTTGCTAAGCTTATGGGGCTGATGAAATGTACAAGGCTGTTTAG  443

seq1  CAAGGTAGGCTTAGGCGACTGAGAAGTGAGCAACTTGGGATGTGTCCTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGGCTTAGGCGACTGAGAAGTGAGCAACTTGGGATGTGTCCTTT  493

seq1  GAGGGCCCTTCTTCCATCTTCTTGCTTTCTCAACACTAAGAGGTGGGTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCCTTCTTCCATCTTCTTGCTTTCTCAACACTAAGAGGTGGGTGG  543

seq1  CTTTTGCTTTCCCACATGCTCCTAGCCACAGAGATTTGACTAATCCACTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTCCCACATGCTCCTAGCCACAGAGATTTGACTAATCCACTA  593

seq1  GAAGTCGGTGTGTTCCAGAACTGCTTATCTTGTTCAGGGTCACAGAGGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGGTGTGTTCCAGAACTGCTTATCTTGTTCAGGGTCACAGAGGCT  643

seq1  GAGAGGAAGGTACTGGCTAAAGCTGGATTCCCACACAAGGTTTTAAGGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGGTACTGGCTAAAGCTGGATTCCCACACAAGGTTTTAAGGTC  693

seq1  AGCTCCTGGTGTTTAAGACTGCCTCACCTCTCTGCAATCTCCTGTATCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGGTGTTTAAGACTGCCTCACCTCTCTGCAATCTCCTGTATCTC  743

seq1  TGACTTGTGGTCTCCCTTTGAAGCACTCACTTGACTAGTCCAGGCTCATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTGGTCTCCCTTTGAAGCACTCACTTGACTAGTCCAGGCTCATC  793

seq1  CGAGGAACTCTCCTTTATAATCAGCTGATCAAATCAAACCCTTGCAGTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAACTCTCCTTTATAATCAGCTGATCAAATCAAACCCTTGCAGTCC  843

seq1  CTATACTCAAGTCAACGAATTAGGGACTGTCATTTCCTTTGCTCTGTCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCAAGTCAACGAATTAGGGACTGTCATTTCCTTTGCTCTGTCAT  893

seq1  GTGACCTAATCACAAGAAGGATACTATATTTTGTAGAAGTTTTGTCCCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTAATCACAAGAAGGATACTATATTTTGTAGAAGTTTTGTCCCAG  943

seq1  TTCTTCCTCCCAGCCCCATGCTCCTTGGCCAACCTAGACTCAGACTTAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCCCAGCCCCATGCTCCTTGGCCAACCTAGACTCAGACTTAAA  993

seq1  ATATATCTACAAGTACCTTGGCCATATAGCTAGGCTCTTCCCTGACTAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTACAAGTACCTTGGCCATATAGCTAGGCTCTTCCCTGACTAGA  1043

seq1  TCATAACTTTTTATAACCCATTTACTGTAATCTGCACTCTGCCCCGTGGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTTTTTATAACCCATTTACTGTAATCTGCACTCTGCCCCGTGGC  1093

seq1  TCGTTACTGGTGCTCAGACACCATTAGTATGTCTTGTCACATCTTCCTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTACTGGTGCTCAGACACCATTAGTATGTCTTGTCACATCTTCCTGG  1143

seq1  GTGAATCTCCTGTGCCTGACTCTATCCCAGAATTC  1180
      |||  ||||||||||||||||||||||||||||||
seq2  GTG-TTCTCCTGTGCCTGACTCTATCCCAGAATTC  1177

seq1: chr16_92353438_92354161
seq2: B6Ng01-135G19.g_75_803

seq1  GAACAGACTAACAGGATGCACTGCAACTGTAGAGGATGAAGCTGAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACTAACAGGATGCACTGCAACTGTAGAGGATGAAGCTGAGTTGA  50

seq1  AGAACATGGGTCATTGTCAAAGGGTTTTTTTTTTTGTTTTTTGTTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGGGTCATTGTCAAAGGGTTTTTTTTTTTGTTTTTTGTTTTTTG  100

seq1  TTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTTGCACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTTGCACTCC  150

seq1  TTGCTGCTTCTTGGCTGCAGGCTGAGGTGAGCCTGTCAGTTTTAACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTTCTTGGCTGCAGGCTGAGGTGAGCCTGTCAGTTTTAACTGCA  200

seq1  ATGCTCTGCCTCTGCCTCGCCATGACTCAAGCAATGGCGGGCGCCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGCCTCTGCCTCGCCATGACTCAAGCAATGGCGGGCGCCAAGTA  250

seq1  ACAGTTGATCAAAACCTCCGCAGTGTGAGCCAAGGTAAATCTTTCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATCAAAACCTCCGCAGTGTGAGCCAAGGTAAATCTTTCCAGAG  300

seq1  TTGTCTCTCAGGCATTTGTTTCACAATAGAAAAATGGCTTACGCCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCAGGCATTTGTTTCACAATAGAAAAATGGCTTACGCCAGGAG  350

seq1  GTCACTGGGTCTTCCGAGGTCGTTGGTTTTTCCTTCCCACATGGCCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGGTCTTCCGAGGTCGTTGGTTTTTCCTTCCCACATGGCCTCCA  400

seq1  CGACTCAGAGTCTTTAGGTTTAGGTCTCATCTCGCCATGGTCGACACGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCAGAGTCTTTAGGTTTAGGTCTCATCTCGCCATGGTCGACACGGT  450

seq1  GGCTCCCTTCAGGCGTTCTGGAGAGAGCTGTCTTGGTGACTGAGAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTTCAGGCGTTCTGGAGAGAGCTGTCTTGGTGACTGAGAAATGA  500

seq1  AGCTCATTGCTCTGATCGCTGGCCTTTTGAGTGTGGGCAGAGGCCTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTGCTCTGATCGCTGGCCTTTTGAGTGTGGGCAGAGGCCTGTTA  550

seq1  GGGGTGAGAAGGCCGGAAGGCACACCATAC-TTCCAAATCCTCAACAAAG  599
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGGTGAGAAGGCCGGAAGGCACACCATACTTTCCAAATCCTCAACAAAG  600

seq1  CCGAAATCTAGCCCCATCCTGAGCAGGGGACCAGGCAGGAG-TTTTCTGG  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCGAAATCTAGCCCCATCCTGAGCAGGGGACCAGGCAGGAGTTTTTCTGG  650

seq1  -AAACCAATGCATCAAACGCTCAGAGCACAGTGGGCTCCGAA-CTGATGG  696
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAACCAATGCATCAAACGCTCAGAGCACAGTGGGCTCCGAACCTGATGG  700

seq1  GTATCA-TTTTATTTCCAAAAGAAATAAC  724
      |||||| ||||||||||||||||||||||
seq2  GTATCATTTTTATTTCCAAAAGAAATAAC  729