BAC Information

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BAC

Clone NameB6Ng01-135N16
Chromosome16 (Build37)
Map Location 36,406,953 - 36,408,095
singlet/doubletsinglet
Overlap geneStfa2
Upstream genePdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105
Downstream geneStfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135N16.bB6Ng01-135N16.g
ACCDH935789DH935790
length1,1211,240
definitionDH935789|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N16, 5' end.DH935790|Mus musculus domesticus DNA, BAC clone: B6Ng01-135N16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacattttggatggtctctgtgcttcacatgtctgatcccagaa
gctgcaattactgatggaattttccagtcccactaggtgaaactatgtgt
gaaggcacttacgtttattaaggattcctgaactgattccaggatgcaat
gcccaccaaaccatcacattcaaaacagaactcaatgtttctagcaagtt
attacatgttgcttaactatcatctaaataataaaaatgtaacatattat
gttttttataaaagggaaaaaggcatgcaaattatagaggtaggtttgca
attgattttctaccatcatgttttcctctttgaaacgaagtcatgctgga
gaccaagattagtttggattgttgtctgtttgtttgtttgtttctgcatt
tgtttcacacatagacttgctagatgactatcctgcaagtaacccaggct
agcttcaaacccaaggcactcctgctgcctcaacttctcaagtgctggga
ttacaggcatgtgccaccaagctaggcactatcagatcttatgtgagtag
aacagatgggagccttcatgcttagggcactgaacattctacaggggtca
caggctaaaattaataactaagtatttagggctaaatagttcccactcat
agtttatttcaataaatatcttggagcattttatttttgaggaacattaa
gtctttattccttcgttagaatcctcacatgaagtcagtgttctcaaccc
taaatgtgcacatgtcagatctgactgaagagaactagatgggcccgagt
gtctacatttcttccaggtctctgggagagtgggcactcctacccttgac
ttcactttcctgtaggccggatatctggcatcctaaaggctttggggatc
tagggctttaaaataggatgtcaaggagaggactttgtttacctgtaaga
gaaagagcttaaaggactaaaataccaaagtgtagaaaaagttgtttcaa
cagtaagcacagatgagtacagtgatactaatgctgactagaaaaatttc
tgagatgttcaaggatcccgtgtcttagggaacgactgaacatacatatt
tgaatagagagtcgaagattt
gaattctttgggtgagagcaaggatttaaggtaaacttcctttgagaagc
attagttagtaaaaaacactttccacttaggaaacaatatacactgaaag
attaaaactcttggcttcttgtatagaagcagaaacaataaaaatttctt
acataatgtaaagttacattagccatacctagaggcaaaattttctagta
attaccagttcactagaagcaaaactctttgaatttaagcattattctaa
acatctgaatagatctgcaacactgttaaaaagaaattttcttgaacaca
gggaaaaactttctcaggcactgtttgcaaaacaaaagaaaggccacaag
ctgctctggggctgcccagagccctgcattgactcaaacgtaaaatacct
tttaatctgagcatcttggccctcctgtaataaggaccgattctagagga
acaatataattgtctacgcctctaactttgatactctttcttaagatgac
ttacagttaaaacgttcttcacaactttagtgttgtgaaaaaattgccaa
tattgcagtttcctgccaggcagcaactatagccaaactgattgtttgag
ggtctaatctattcacaaagacaaacataactagataacttttgtcacag
ttttgtatgaagtgagctgtattagtgctttcaaaagataattactctta
taattatcttaattaacaatatatggtgagtagaaaatcttaaatttgca
atcaaactgcaagctgcagtcaatggaacaatggcagttttaaccataat
ttttaagttttcgttggaatattagaatatatctataactttttggaaag
caaaacccaagtctaaaacaatttatcatctttaaaataaatatagaagc
attactatcataattacaaggtttggctgccaattaatacctatgaatac
cttataaaagcaagctttaaatgctttaataaagagcactgcctttaatc
ttatctaaatttactatttaggataggaaccacattaattattatctaac
tagaatatctttagagaccagctctgccggcctttatgcccacggttcga
aggacctctaacttgaatatcatttaaacctacttctgtagcaagtgtaa
ccaattattaattaacaacactttgagctgaagtgaaccgtcgcgatgca
tattatatgtaaaaagggtactccaatagtgagtatggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36406953_36408095
seq2: B6Ng01-135N16.b_45_1165 (reverse)

seq1  AAATCTTCTGTAACTCTCTATATCAAATAATTGTATGTTTCTGTCTGTTT  50
      ||||||||    ||||||||| |||||||  |||||| ||| |||   ||
seq2  AAATCTTC---GACTCTCTAT-TCAAATA--TGTATG-TTCAGTC--GTT  41

seq1  CCCTATAGCACGGGATCCTGGAACATCTCAGGAAAATTTTTCTTAGTCAG  100
      |||||   ||||||||||| |||||||||||  ||||||||| |||||||
seq2  CCCTAAGACACGGGATCCTTGAACATCTCAG--AAATTTTTC-TAGTCAG  88

seq1  CATAAGTATCAACTGTACTTCATCTGTGCTTACTGGTTTTGAAAC-ACTT  149
      ||| |||||| ||||||| ||||||||||||||||   ||||||| ||||
seq2  CATTAGTATC-ACTGTAC-TCATCTGTGCTTACTG---TTGAAACAACTT  133

seq1  TTTCTACACTTTGGTATTTTAGTCCTTTTAGCTCTTTCTTCTTACAGGTA  199
      |||||||||||||||||||||||||||| ||||||||| |||||||||| 
seq2  TTTCTACACTTTGGTATTTTAGTCCTTTAAGCTCTTTC-TCTTACAGGT-  181

seq1  AAACAGAGTCCTCTTCCTTGACATCCTATTTTAAAGCCCTAGATCCCCAA  249
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTCCTC-TCCTTGACATCCTATTTTAAAGCCCTAGATCCCCAA  230

seq1  AGCCTTTTAGGATGCCAGATATCCGGGCCTACAGGAAAGTGAAGTCAAGG  299
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCC-TTTAGGATGCCAGATATCC-GGCCTACAGGAAAGTGAAGTCAAGG  278

seq1  GTAGGAGTGCCCACTCTCCCAGAGACCTTGGAAGAAATGTAGACACTCGG  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAGGAGTGCCCACTCTCCCAGAGACC-TGGAAGAAATGTAGACACTCGG  327

seq1  GCCCATCTAGTTCTCTTCAGTCAGATCTGACATGTGCACATTTAGGGTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCTAGTTCTCTTCAGTCAGATCTGACATGTGCACATTTAGGGTTG  377

seq1  AGAACACTGACTTCATGTGAGGATTCTAACGAAGGAATAAAGACTTAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTGACTTCATGTGAGGATTCTAACGAAGGAATAAAGACTTAATG  427

seq1  TTCCTCAAAAATAAAATGCTCCAAGATATTTATTGAAATAAACTATGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAAATAAAATGCTCCAAGATATTTATTGAAATAAACTATGAGT  477

seq1  GGGAACTATTTAGCCCTAAATACTTAGTTATTAATTTTAGCCTGTGACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTATTTAGCCCTAAATACTTAGTTATTAATTTTAGCCTGTGACCC  527

seq1  CTGTAGAATGTTCAGTGCCCTAAGCATGAAGGCTCCCATCTGTTCTACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAATGTTCAGTGCCCTAAGCATGAAGGCTCCCATCTGTTCTACTC  577

seq1  ACATAAGATCTGATAGTGCCTAGCTTGGTGGCACATGCCTGTAATCCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGATCTGATAGTGCCTAGCTTGGTGGCACATGCCTGTAATCCCAG  627

seq1  CACTTGAGAAGTTGAGGCAGCAGGAGTGCCTTGGGTTTGAAGCTAGCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGAAGTTGAGGCAGCAGGAGTGCCTTGGGTTTGAAGCTAGCCTG  677

seq1  GGTTACTTGCAGGATAGTCATCTAGCAAGTCTATGTGTGAAACAAATGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTTGCAGGATAGTCATCTAGCAAGTCTATGTGTGAAACAAATGCA  727

seq1  GAAACAAACAAACAAACAGACAACAATCCAAACTAATCTTGGTCTCCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAAACAAACAGACAACAATCCAAACTAATCTTGGTCTCCAGC  777

seq1  ATGACTTCGTTTCAAAGAGGAAAACATGATGGTAGAAAATCAATTGCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCGTTTCAAAGAGGAAAACATGATGGTAGAAAATCAATTGCAAA  827

seq1  CCTACCTCTATAATTTGCATGCCTTTTTCCCTTTTATAAAAAACATAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCTATAATTTGCATGCCTTTTTCCCTTTTATAAAAAACATAATA  877

seq1  TGTTACATTTTTATTATTTAGATGATAGTTAAGCAACATGTAATAACTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTTTTATTATTTAGATGATAGTTAAGCAACATGTAATAACTTG  927

seq1  CTAGAAACATTGAGTTCTGTTTTGAATGTGATGGTTTGGTGGGCATTGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACATTGAGTTCTGTTTTGAATGTGATGGTTTGGTGGGCATTGCA  977

seq1  TCCTGGAATCAGTTCAGGAATCCTTAATAAACGTAAGTGCCTTCACACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATCAGTTCAGGAATCCTTAATAAACGTAAGTGCCTTCACACAT  1027

seq1  AGTTTCACCTAGTGGGACTGGAAAATTCCATCAGTAATTGCAGCTTCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACCTAGTGGGACTGGAAAATTCCATCAGTAATTGCAGCTTCTGG  1077

seq1  GATCAGACATGTGAAGCACAGAGACCATCCAAAATGTTGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGACATGTGAAGCACAGAGACCATCCAAAATGTTGAATTC  1121