BAC Information

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BAC

Clone NameB6Ng01-136A13
Chromosome16 (Build37)
Map Location 66,238,874 - 66,364,099
singlet/doubletdoublet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136A13.bB6Ng01-136A13.g
ACCDH935922DH935923
length1,2001,179
definitionDH935922|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A13, 5' end.DH935923|Mus musculus domesticus DNA, BAC clone: B6Ng01-136A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,238,874 - 66,240,107)(66,362,919 - 66,364,099)
sequence
gaattcttctttggggattggctgattccatttggtgtgtctttgaggtt
tatccatgttagagcatattgaaaatttcacttattttaaggttgcatta
atattccacttattgtatgcataaaccacattttctggtgaaatctatgt
tgatacatacttactcctattttttttttttgccagctttcaataattct
cttgtgtgcacaaacatacgcagatttcttgaagttccagttgaacatta
gggagtacaagcatgaatgtaaaatgtctaaattaagtgtaatagcattt
ttttttgtagaaataacattgaaaaacctggctctcacatttaataattt
gacatatttaactgtgcatgaataactactccagagttgttaacaaattc
ttacaattatggaaaaatagtttttccactagtgtatattatttatacac
agttgtctttgcccttcatcatgtatattcctttatataaggatatataa
tttttatatatgaaatttatatttatatatatatgcatatacaaatttgc
aattcagctagatccttatttatttttattatttttaaactaaaatataa
taacatcatatttctctttgcttacattctaactcctgccatgagctgct
cacctggctccctcttaatttgatgccctctcttttctctttaactggta
ttgctgcacatgtataaacacataaattaatacatacaagcttctgagtc
cattcagtgtttcttacggacatgcttgtgatttcaaggctgaccatttg
tccacggatggctccatgtaaggtagttcccttccataatagcaggtctg
tttattttgtaactcattagggtcttctttagatagccatactgttaagt
atcctgtgaagcttatctgtcattccttggagacacatctacagacatct
cctgcttcttagctctatcaatcctgcctcctttcatgggagcttccagg
cgcctttgaggcaggagtttgtagcaagctgggtaaccgcagtcagtttt
gtttggtttgtttggtttatttttttttttgtgcagtacaaccacattta
acagtgtgagtcgtaatgggcttggtggcgaagataaggtcttatcagga
gtgggagctggttatcctgattaggtatcacttccttagctaaaggtctc

gaattcactctcgcacctgtgcacaatgcttgtttactagttaggcacag
tgggagccagcgccatcttgtaatggcaattacttaaggctctccacact
cagctattttgttgagttaaacaaaatggaccttatgcagataatcatag
taatggacacacattcacaaaaattcattatgtttttttaaaatttttat
tcaaattttcactgtaataagcctgataacaccagaataaaaattacctg
aaaaaatagttaaaaggaaatgtttaaagtaaggacagttatttggaata
gttatattttatatattagaacaattaatttatagaataaactctataga
tagcataaaacagaaagcaaattcaaactgatgctgtgattttgcgaaag
tatgttgagctaacagagatctttgcttacatcagagctgtaaatgcatt
gtaactgaacacaaaaatgactgtttgtgaaactactattgtattaagtt
ggcataaggttaccctgatttttactaaatttaatttatttaggaaatat
atgatagcagaattaattaaactaataaatttgaagttgatgcctcatgt
caatagtatactttaaaattttaaagatatcaaagcttacatgtttatca
aatatgaaattaaattatttaaaatcagcctataaaacatctttactttc
caaatatagatgagtttatttagtatcttatgttagtgccttgactagca
taccttttcatctaccataaatttctaattatattatttgtaaataacta
tatgtatatacattatatacatataaatatagtgtatgtgtgtacaggca
tacagtactcattgtagactttcaatgctacagcaaaaatatctgagata
ctaaattgataaaaatgaaagctttattttgcctcacggtttcagaggtt
tattttttgacctccagttcttttgggctggtagcagagaatatcaatgt
tttgtatgctgcatagatctgggtttcccactacctacaggctgggacgc
aaaagcatgatccagaatcttcagcttgccctcatgttcatggtccagtg
actaaagtcctatccctggccttatccttcagaaagaggcccagttcagc
acattatattcctaaatacagagccttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66238874_66240107
seq2: B6Ng01-136A13.b_46_1245

seq1  GAATTCTTCTTTGGGGATTGGCTGATTCCATTTGGTGTGTCTTTGAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTGGGGATTGGCTGATTCCATTTGGTGTGTCTTTGAGGTT  50

seq1  TATCCATGTTAGAGCATATTGAAAATTTCACTTATTTTAAGGTTGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGTTAGAGCATATTGAAAATTTCACTTATTTTAAGGTTGCATTA  100

seq1  ATATTCCACTTATTGTATGCATAAACCACATTTTCTGGTGAAATCTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCACTTATTGTATGCATAAACCACATTTTCTGGTGAAATCTATGT  150

seq1  TGATACATACTTACTCCTATTTTTTTTTTTTGCCAGCTTTCAATAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATACTTACTCCTATTTTTTTTTTTTGCCAGCTTTCAATAATTCT  200

seq1  CTTGTGTGCACAAACATACGCAGATTTCTTGAAGTTCCAGTTGAACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGCACAAACATACGCAGATTTCTTGAAGTTCCAGTTGAACATTA  250

seq1  GGGAGTACAAGCATGAATGTAAAATGTCTAAATTAAGTGTAATAGCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTACAAGCATGAATGTAAAATGTCTAAATTAAGTGTAATAGCATTT  300

seq1  TTTTTTGTAGAAATAACATTGAAAAACCTGGCTCTCACATTTAATAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTAGAAATAACATTGAAAAACCTGGCTCTCACATTTAATAATTT  350

seq1  GACATATTTAACTGTGCATGAATAACTACTCCAGAGTTGTTAACAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTTAACTGTGCATGAATAACTACTCCAGAGTTGTTAACAAATTC  400

seq1  TTACAATTATGGAAAAATAGTTTTTCCACTAGTGTATATTATTTATACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTATGGAAAAATAGTTTTTCCACTAGTGTATATTATTTATACAC  450

seq1  AGTTGTCTTTGCCCTTCATCATGTATATTCCTTTATATAAGGATATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTTTGCCCTTCATCATGTATATTCCTTTATATAAGGATATATAA  500

seq1  TTTTTATATATGAAATTTATATTTATATATATATGCATATACAAATTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATATGAAATTTATATTTATATATATATGCATATACAAATTTGC  550

seq1  AATTCAGCTAGATCCTTATTTATTTTTATTATTTTTAAACTAAAATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCTAGATCCTTATTTATTTTTATTATTTTTAAACTAAAATATAA  600

seq1  TAACATCATATTTCTCTTTGCTTACATTCTAACTCCTGCCATGAGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCATATTTCTCTTTGCTTACATTCTAACTCCTGCCATGAGCTGCT  650

seq1  CACCTGGCTCCCTCTTAATTTGATGCCCTCTCTTTTCTCTTTAACTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTCCCTCTTAATTTGATGCCCTCTCTTTTCTCTTTAACTGGTA  700

seq1  TTGCTGCACATGTATAAACACATAAATTAATACATACAAGCTTCTGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCACATGTATAAACACATAAATTAATACATACAAGCTTCTGAGTC  750

seq1  CATTCAGTGTTTCTTACGGACATGCTTGTGATTTCAAGGCTGACCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTGTTTCTTACGGACATGCTTGTGATTTCAAGGCTGACCATTTG  800

seq1  TCCACGGATGGCTCCATGTAAGGTAGTTCCCTTCCATAATAGCAGGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGATGGCTCCATGTAAGGTAGTTCCCTTCCATAATAGCAGGTCTG  850

seq1  TTTATTTTGTAACTCATTAGGGTCTTCTTTAGATAGCCATACTGTTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTATTTTGTAACTCATTAGGGTCTTCTTTAGATAGCCATACTGTTAAG-  899

seq1  TATCCTGTGAAGCTTATCTGTCATTCCTTGGAGACACAATCTTACAGACA  950
      ||||||||||||||||||||||||||||||||||||| ||| ||||||| 
seq2  TATCCTGTGAAGCTTATCTGTCATTCCTTGGAGACAC-ATC-TACAGAC-  946

seq1  ATCTCCTGCTTCTTTAGCTCTATCAATCCTGCCTCCTTTCATGAGAGCTT  1000
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  ATCTCCTGCTTC-TTAGCTCTATCAATCCTGCCTCCTTTCATGGGAGCTT  995

seq1  CCAAGCGCCTTTGAGGCAGGAGTTTTGTAGCAAAGCTGGGTAACCCGCAG  1050
      ||| |||||||||||||||||| |||||||| ||||||||||| ||||||
seq2  CCAGGCGCCTTTGAGGCAGGAG-TTTGTAGC-AAGCTGGGTAA-CCGCAG  1042

seq1  TCAGTTTTGTTTTGTTTTGTTTTGTTTTATTTTTTTTTTTTTGTGCAGTT  1100
      ||||||||| |||| ||||||| |||   | ||||||||||||||||| |
seq2  TCAGTTTTG-TTTGGTTTGTTTGGTT---TATTTTTTTTTTTGTGCAG-T  1087

seq1  ACAACCACATTTTTAACCAGTTGTAGTTTTCTGTAATGGGCTTTGTTGCG  1150
      ||||||||||||   | ||||   |||     ||||||||||| || |||
seq2  ACAACCACATTT---AACAGTGTGAGT----CGTAATGGGCTTGGTGGCG  1130

seq1  AAGATAAGTGTCTTTAATCAGGAGTGGGAGCTTGTTATATCTCTGTATTT  1200
      |||||||| |||||  |||||||||||||||| |||||    ||| ||| 
seq2  AAGATAAG-GTCTT--ATCAGGAGTGGGAGCTGGTTAT---CCTG-ATT-  1172

seq1  AAAGATAACTACTTCCCTTAGCTAAAGAGGTCTC  1234
        || || | |||| ||||||||||  |||||||
seq2  --AGGTATC-ACTT-CCTTAGCTAA--AGGTCTC  1200

seq1: chr16_66362919_66364099
seq2: B6Ng01-136A13.g_70_1248 (reverse)

seq1  TAAAGGCTCTG-ATTTAAGTAATTATAGTGCTGAAAACTGGG-CTCTTTC  48
      ||||||||||| ||||| | |  ||  ||||||  ||||||| |||||||
seq2  TAAAGGCTCTGTATTTAGGAATATAATGTGCTG--AACTGGGCCTCTTTC  48

seq1  TGAAG--TAAGGCCAAGGGATAGGAACTTTAGTCACTTGACCATGACCAT  96
      |||||  ||||||| ||||||||| |||||||||||| |||||||| |||
seq2  TGAAGGATAAGGCC-AGGGATAGG-ACTTTAGTCACTGGACCATGAACAT  96

seq1  GAGGGCAAGCTG-AGATTCTGGATCATGCTTTTGCGTCCCAGCCTGTAGG  145
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAAGCTGAAGATTCTGGATCATGCTTTTGCGTCCCAGCCTGTAGG  146

seq1  TAGTGGGAAACCCAGATCTATTGCAGCATAC-ACACATTGATATTCCTCT  194
      |||||||||||||||||||| |||||||||| | ||||||||||| ||| 
seq2  TAGTGGGAAACCCAGATCTA-TGCAGCATACAAAACATTGATATT-CTC-  193

seq1  TGCTACCAGCCCAAAAGAACTGGAGGTCAAAAAATAAAACCTCTGAAACC  244
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTACCAGCCCAAAAGAACTGGAGGTCAAAAAAT-AAACCTCTGAAACC  242

seq1  GTGAGGCAAAATAAAGCTTTCATTTTTATCAATTTAGTATCTCAGATATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAAAATAAAGCTTTCATTTTTATCAATTTAGTATCTCAGATATT  292

seq1  TTTGCTGTAGCATTGAAAGTCTACAATGAGTACTGTATGCCTGTACACAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTAGCATTGAAAGTCTACAATGAGTACTGTATGCCTGTACACAC  342

seq1  ATACACTATATTTATATGTATATAATGTATATACATATAGTTATTTACAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTATATTTATATGTATATAATGTATATACATATAGTTATTTACAA  392

seq1  ATAATATAATTAGAAATTTATGGTAGATGAAAAGGTATGCTAGTCAAGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAATTAGAAATTTATGGTAGATGAAAAGGTATGCTAGTCAAGGC  442

seq1  ACTAACATAAGATACTAAATAAACTCATCTATATTTGGAAAGTAAAGATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATAAGATACTAAATAAACTCATCTATATTTGGAAAGTAAAGATG  492

seq1  TTTTATAGGCTGATTTTAAATAATTTAATTTCATATTTGATAAACATGTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGGCTGATTTTAAATAATTTAATTTCATATTTGATAAACATGTA  542

seq1  AGCTTTGATATCTTTAAAATTTTAAAGTATACTATTGACATGAGGCATCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGATATCTTTAAAATTTTAAAGTATACTATTGACATGAGGCATCA  592

seq1  ACTTCAAATTTATTAGTTTAATTAATTCTGCTATCATATATTTCCTAAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAATTTATTAGTTTAATTAATTCTGCTATCATATATTTCCTAAAT  642

seq1  AAATTAAATTTAGTAAAAATCAGGGTAACCTTATGCCAACTTAATACAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTTAGTAAAAATCAGGGTAACCTTATGCCAACTTAATACAAT  692

seq1  AGTAGTTTCACAAACAGTCATTTTTGTGTTCAGTTACAATGCATTTACAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTCACAAACAGTCATTTTTGTGTTCAGTTACAATGCATTTACAG  742

seq1  CTCTGATGTAAGCAAAGATCTCTGTTAGCTCAACATACTTTCGCAAAATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGTAAGCAAAGATCTCTGTTAGCTCAACATACTTTCGCAAAATC  792

seq1  ACAGCATCAGTTTGAATTTGCTTTCTGTTTTATGCTATCTATAGAGTTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCAGTTTGAATTTGCTTTCTGTTTTATGCTATCTATAGAGTTTA  842

seq1  TTCTATAAATTAATTGTTCTAATATATAAAATATAACTATTCCAAATAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAATTAATTGTTCTAATATATAAAATATAACTATTCCAAATAAC  892

seq1  TGTCCTTACTTTAAACATTTCCTTTTAACTATTTTTTCAGGTAATTTTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTACTTTAAACATTTCCTTTTAACTATTTTTTCAGGTAATTTTTA  942

seq1  TTCTGGTGTTATCAGGCTTATTACAGTGAAAATTTGAATAAAAATTTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGTTATCAGGCTTATTACAGTGAAAATTTGAATAAAAATTTTAA  992

seq1  AAAAACATAATGAATTTTTGTGAATGTGTGTCCATTACTATGATTATCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATAATGAATTTTTGTGAATGTGTGTCCATTACTATGATTATCTG  1042

seq1  CATAAGGTCCATTTTGTTTAACTCAACAAAATAGCTGAGTGTGGAGAGCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTCCATTTTGTTTAACTCAACAAAATAGCTGAGTGTGGAGAGCC  1092

seq1  TTAAGTAATTGCCATTACAAGATGGCGCTGGCTCCCACTGTGCCTAACTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAATTGCCATTACAAGATGGCGCTGGCTCCCACTGTGCCTAACTA  1142

seq1  GTAAACAAGCATTGTGCACAGGTGCGAGAGTGAATTC  1181
      |||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGCATTGTGCACAGGTGCGAGAGTGAATTC  1179