BAC Information

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BAC

Clone NameB6Ng01-136J18
Chromosome16 (Build37)
Map Location 34,642,237 - 34,783,737
singlet/doubletdoublet
Overlap geneRopn1, Ccdc14
Upstream geneSlc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
Downstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136J18.bB6Ng01-136J18.g
ACCDH936340DH936341
length1,1801,008
definitionDH936340|Mus musculus domesticus DNA, BAC clone: B6Ng01-136J18, 5' end.DH936341|Mus musculus domesticus DNA, BAC clone: B6Ng01-136J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,782,545 - 34,783,737)(34,642,237 - 34,643,248)
sequence
gaattccttgaccttagctcctctttccacacgtgtggagctggtaccac
atcctctctagtcactttccatgatctgccagctagagaggcctctaagc
tcaccatgcctctcctctattctcagagccaccacaccttagatagaccc
agtcagggccaggcccctggacattccatcactcccactctcaggcctag
aataagcctctcctggctacaatcattagtacttccctgttccatggact
cttcatattccttctttcaaaggtcttgaagtcacaagaaaacatgaaac
ggagctactgagcatttaagagtacgtgtagaaaggctcattctaagcta
acttttcaatctgccaataattccatctattcccaagtttcatgacactt
gggagcaaccaaaagaaaaaaaagttcactttttctggagcaaagctgat
gagaggcatgagagaacatgtccccctactccacccccccaactgaattc
gtaaaggcttcctacagagcgagagtacacatcaccatagactgagcacc
actggacactcaagaagaaacatttaccatttggtctcttttaatatcag
catctgttttaagaaaccatcgaaatactaaagtgcagtcaaaggccgtt
cgttgctttcgtactggggcagaggtcaggatgctaatacaaatttcatg
gttctgagcagaagactgtactgccgtcaccacccatcctggtgggaagg
gatgaaaggctggtgatcaatgagtcagagggcattgaatgtgtggtgag
atggattgtcttaatgaattgaggacaaaggaaagaagatccaattacct
acattaaacagaaagttcattataaagaacagtcttgcctaagatgctaa
aagcatccctgcaaagaagcactgggaaagaaatcagcaattagtggacc
tcttctagtatccctcttaagcaccaataaaccttcactgggagttgaca
gcagtgacacagatgtctgctccaggtgtatgggagaacaggtgccagct
ttctgctgtgtcgtctgctgtggtaaagtaaatttatattgtctatctgg
aggagaggatcctgtcaggttctatggctaaacggaaggcttaaagtgac
accagacattgctcaagaagaaaacatgcc
gaattctcctgtgacagtctgaagatccagcaagaagcagatggtacact
taagaaagtttagctgagctggagagatggctcagtggttaagggtactg
gctgttcttccaggggtcccaggtttagttcccagcaatgacacaggatg
ggaccgggattacaagtatctataactccagttccaaggaatccaatacc
ctcgtatggcctctgcgagaaccaagtacacataaggtataccagcatgc
atttatatgtatgcaaagcaaattatatacattcagataaagtaaacatt
taaaaaaatcatcttaaaagaaagtttagctaagaaaatatttactaagg
acaaatgcaatggtaaggccaaggaccagcaattatgggaaagtgttacc
gtccctagacctgagagggcaagcaattggccaaaccactggactacaac
ccccgaggaagcttctggggacccataagaattgcatgtcacttggagac
tcatacctgtaaactcgacgccccagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagataatgat
gatgatgatgtgtgaggccagcccagtccgtgtagtaaaaagctgtctga
gagtaaataaatatataagcacagagaggtgaatagtaggtagaagaaga
gacacgagattggagctgatgctgggcatgcaaggtgggagtgtcacgtt
cagagctagggaacaaaacctgctgatttctcttcataggccaagactac
cagacacggaagcccatcagagcctaggagctacaatcctgaggcacagg
ccaagacagagacaactagagagcaatctcagagggacaaaggaaacaag
ctcaagcgtagaatggggattccaggatgggctttaagagatggaaagat
ttacttacgtggaagctatcttgggcagaggtagctttgcgaatatagga
aatgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34782545_34783737
seq2: B6Ng01-136J18.b_45_1224 (reverse)

seq1  GGCATGTTTTCTTTCCTTGGGC-ATGTCTGTAGTCCACTGTTAAGCTTTC  49
      |||||||||||||  |||| || |||||||  || |||| |||||| |||
seq2  GGCATGTTTTCTT--CTTGAGCAATGTCTGGTGT-CACT-TTAAGCCTTC  46

seq1  TGTCTAGCCAATAGCACCTGACAGGATCCTTCCTCCT-CAGATAGACAAT  98
       || ||||| |||| |||||||||||||||  ||||| ||||||||||||
seq2  CGTTTAGCC-ATAGAACCTGACAGGATCCT--CTCCTCCAGATAGACAAT  93

seq1  ATATATGTACTTTACCACCAGCAGACGGACACAGCAGAAACCTGGCACCT  148
      ||| || |||||||||| |||||||| ||||||||||||| |||||||||
seq2  ATAAATTTACTTTACCA-CAGCAGAC-GACACAGCAGAAAGCTGGCACCT  141

seq1  GTTCCTCCCATACACCCTGGAGCAGACATTCTTGTGGTCACTGCTGTCAA  198
      ||| |||||||||| ||||||||||||||   ||| ||||||||||||||
seq2  GTT-CTCCCATACA-CCTGGAGCAGACAT--CTGT-GTCACTGCTGTCAA  186

seq1  CTCCCAGTGAAGGTTTAATTGGTGCTTAAGAGGGATACTAGAAGAGGTCC  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCCCAGTGAAGGTTT-ATTGGTGCTTAAGAGGGATACTAGAAGAGGTCC  235

seq1  ACTAATTGCTGATTTCTTTCCCAGTGCTTCTTTGCAGGGATGCTTTTAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTGCTGATTTCTTTCCCAGTGCTTCTTTGCAGGGATGCTTTTAGC  285

seq1  ATCTTAGGCAAGACTGTTCTTTATAATGAACTTTCTGTTTAATGTAGGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGCAAGACTGTTCTTTATAATGAACTTTCTGTTTAATGTAGGTA  335

seq1  ATTGGATCTTCTTTCCTTTGTCCTCAATTCATTAAGACAATCCATCTCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCTTCTTTCCTTTGTCCTCAATTCATTAAGACAATCCATCTCAC  385

seq1  CACACATTCAATGCCCTCTGACTCATTGATCACCAGCCTTTCATCCCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCAATGCCCTCTGACTCATTGATCACCAGCCTTTCATCCCTTC  435

seq1  CCACCAGGATGGGTGGTGACGGCAGTACAGTCTTCTGCTCAGAACCATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGATGGGTGGTGACGGCAGTACAGTCTTCTGCTCAGAACCATGA  485

seq1  AATTTGTATTAGCATCCTGACCTCTGCCCCAGTACGAAAGCAACGAACGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATTAGCATCCTGACCTCTGCCCCAGTACGAAAGCAACGAACGG  535

seq1  CCTTTGACTGCACTTTAGTATTTCGATGGTTTCTTAAAACAGATGCTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACTGCACTTTAGTATTTCGATGGTTTCTTAAAACAGATGCTGAT  585

seq1  ATTAAAAGAGACCAAATGGTAAATGTTTCTTCTTGAGTGTCCAGTGGTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGAGACCAAATGGTAAATGTTTCTTCTTGAGTGTCCAGTGGTGC  635

seq1  TCAGTCTATGGTGATGTGTACTCTCGCTCTGTAGGAAGCCTTTACGAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTATGGTGATGTGTACTCTCGCTCTGTAGGAAGCCTTTACGAATT  685

seq1  CAGTTGGGGGGGTGGAGTAGGGGGACATGTTCTCTCATGCCTCTCATCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGGGGGTGGAGTAGGGGGACATGTTCTCTCATGCCTCTCATCAG  735

seq1  CTTTGCTCCAGAAAAAGTGAACTTTTTTTTCTTTTGGTTGCTCCCAAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCCAGAAAAAGTGAACTTTTTTTTCTTTTGGTTGCTCCCAAGTG  785

seq1  TCATGAAACTTGGGAATAGATGGAATTATTGGCAGATTGAAAAGTTAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAACTTGGGAATAGATGGAATTATTGGCAGATTGAAAAGTTAGCT  835

seq1  TAGAATGAGCCTTTCTACACGTACTCTTAAATGCTCAGTAGCTCCGTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGCCTTTCTACACGTACTCTTAAATGCTCAGTAGCTCCGTTTC  885

seq1  ATGTTTTCTTGTGACTTCAAGACCTTTGAAAGAAGGAATATGAAGAGTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTTGTGACTTCAAGACCTTTGAAAGAAGGAATATGAAGAGTCC  935

seq1  ATGGAACAGGGAAGTACTAATGATTGTAGCCAGGAGAGGCTTATTCTAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAGGGAAGTACTAATGATTGTAGCCAGGAGAGGCTTATTCTAGG  985

seq1  CCTGAGAGTGGGAGTGATGGAATGTCCAGGGGCCTGGCCCTGACTGGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGTGGGAGTGATGGAATGTCCAGGGGCCTGGCCCTGACTGGGTC  1035

seq1  TATCTAAGGTGTGGTGGCTCTGAGAATAGAGGAGAGGCATGGTGAGCTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGGTGTGGTGGCTCTGAGAATAGAGGAGAGGCATGGTGAGCTTA  1085

seq1  GAGGCCTCTCTAGCTGGCAGATCATGGAAAGTGACTAGAGAGGATGTGGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCTCTAGCTGGCAGATCATGGAAAGTGACTAGAGAGGATGTGGT  1135

seq1  ACCAGCTCCACACGTGTGGAAAGAGGAGCTAAGGTCAAGGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCACACGTGTGGAAAGAGGAGCTAAGGTCAAGGAATTC  1180

seq1: chr16_34642237_34643248
seq2: B6Ng01-136J18.g_67_1074

seq1  GAATTCTCCTGTGACAGTCTGAAGATCCAGCAAGAAGCAGATGGTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTGACAGTCTGAAGATCCAGCAAGAAGCAGATGGTACACT  50

seq1  TAAGAAAGTTTAGCTGAGCTGGAGAGATGGCTCAGTGGTTAAGGGTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGTTTAGCTGAGCTGGAGAGATGGCTCAGTGGTTAAGGGTACTG  100

seq1  GCTGTTCTTCCAGGGGTCCCAGGTTTAGTTCCCAGCAATGACACAGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTTCCAGGGGTCCCAGGTTTAGTTCCCAGCAATGACACAGGATG  150

seq1  GGACCGGGATTACAAGTATCTATAACTCCAGTTCCAAGGAATCCAATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGGGATTACAAGTATCTATAACTCCAGTTCCAAGGAATCCAATACC  200

seq1  CTCGTATGGCCTCTGCGAGAACCAAGTACACATAAGGTATACCAGCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTATGGCCTCTGCGAGAACCAAGTACACATAAGGTATACCAGCATGC  250

seq1  ATTTATATGTATGCAAAGCAAATTATATACATTCAGATAAAGTAAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGTATGCAAAGCAAATTATATACATTCAGATAAAGTAAACATT  300

seq1  TAAAAAAATCATCTTAAAAGAAAGTTTAGCTAAGAAAATATTTACTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATCATCTTAAAAGAAAGTTTAGCTAAGAAAATATTTACTAAGG  350

seq1  ACAAATGCAATGGTAAGGCCAAGGACCAGCAATTATGGGAAAGTGTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCAATGGTAAGGCCAAGGACCAGCAATTATGGGAAAGTGTTACC  400

seq1  GTCCCTAGACCTGAGAGGGCAAGCAATTGGCCAAACCACTGGACTACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGACCTGAGAGGGCAAGCAATTGGCCAAACCACTGGACTACAAC  450

seq1  CCCCGAGGAAGCTTCTGGGGACCCATAAGAATTGCATGTCACTTGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGGAAGCTTCTGGGGACCCATAAGAATTGCATGTCACTTGGAGAC  500

seq1  TCATACCTGTAAACTCGACGCCCCAGAAGAAGAAGAAGAAGAAGAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTGTAAACTCGACGCCCCAGAAGAAGAAGAAGAAGAAGAAGAAG  550

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAATGAT  600

seq1  GATGATGATGTGTGAGGCCAGCCCAGTCCGTGTAGTAAAAAGCTGTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGATGTGTGAGGCCAGCCCAGTCCGTGTAGTAAAAAGCTGTCTGA  650

seq1  GAGTAAATAAATATATAAGCACAGAGAGGTGAATAGTAGGTAGAAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATAAATATATAAGCACAGAGAGGTGAATAGTAGGTAGAAGAAGA  700

seq1  GACACGAGATTGGAGCTGATGCTGGGCATGCAAGGTGGGAGTGTCAGGTT  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GACACGAGATTGGAGCTGATGCTGGGCATGCAAGGTGGGAGTGTCACGTT  750

seq1  CAGAGCTAGGGAACAAAACCTGCTGATTTCTCTTCATAGGCCAAGACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGGGAACAAAACCTGCTGATTTCTCTTCATAGGCCAAGACTAC  800

seq1  CAGACACGGAAGCCCATCAGAGCCTAGGAGCTACAATCCTGAGGCACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACGGAAGCCCATCAGAGCCTAGGAGCTACAATCCTGAGGCACAGG  850

seq1  CCAAGACAGAGACAACTAGAGAGCAATCTCAGAGGGACAAAGGAAACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGAGACAACTAGAGAGCAATCTCAGAGGGACAAAGGAAACAAG  900

seq1  CTCAAAGCGTAGAATGGGGATTCCAGGATGGGCTTTTAAGAGATTGGAAA  950
      ||| ||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  CTC-AAGCGTAGAATGGGGATTCCAGGATGGGC-TTTAAGAGA-TGGAAA  947

seq1  GATTTACTTACGTGGAAGCTATCTTGGGCAGAGGTAGCTTTTGCGAATAT  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATTTACTTACGTGGAAGCTATCTTGGGCAGAGGTAGC-TTTGCGAATAT  996

seq1  AGGAAATGGAAT  1012
      ||||||||| ||
seq2  AGGAAATGGGAT  1008