BAC Information

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BAC

Clone NameB6Ng01-136K24
Chromosome16 (Build37)
Map Location 72,868,197 - 73,038,467
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136K24.bB6Ng01-136K24.g
ACCDH936396DH936397
length1,143703
definitionDH936396|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K24, 5' end.DH936397|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,868,197 - 72,869,363)(73,037,946 - 73,038,467)
sequence
gaattcccagaatgtctgaaaaccttgagcacgatgctaatctatcacgt
catcacttctggaactccaggagataaaccgtcccagatgcattcatcca
ttctcaaccagtatttcttgccactgggactcattgtgtaaggatagctg
tggtctgtctctcttcccagcttcccttgctctgtagtccctaccaaggt
cttccctccagacagcgctaagtgaacccccaggaatcatctcacctgta
agatgtcagttagggaagcatgaaagaacaccaagctcctcttcatagac
atctcattgaactgaaaacttccaaattgctctacctctgggtgacttga
tgttttgacatgtctgcgtttctatatgtttgcccagttggagatctaaa
aatatatgatgaaatttcttttgatcttctttgttgaacatctgaaaaag
tttacttagcatgtggtaacaattttaatttgggagcatgctgataataa
aaagatgttatgtgcatgcgtgcatccacaagtcaaaaatgagttcacat
tttatttgttctctgcattgagcttgcccaactctgttttaataaacatg
actattaagcttgtggcttttgctaagtcaatgcaaagtaaacaaagtct
gagtcaatcaaatttttgatattatctatgcctggtacctagtaatttta
tggatttcgggcatctgctgtaacatgcttatttgactgctcagtgaaaa
tatcatatgtagtgcctgtgagcaatgtgaataggtaacgtgtttttaaa
aatattatgaattgctaatgaaagtcattttaagcaaaaaaaaaaaaatc
cccaacattataatacagcaatgctatactttgaaaaacaatttttacac
ccacgtcaatttgaaagatatttcctaataaagtgttccctctttatctc
gtgcatatgtgaaatgtgaggatgtgacgggaattttatacatttctcag
tgcttcattatttcagttttaaactcttttaagaaaagaaaatttaccat
ctagtattgatagcacatgcatactgtctctgttcttaaattcataagaa
catattagaataattggcctttacacatttttgaagcctatga
gaattcctgctcatcaacccctgcttggaggtgagatgtctcctaggctc
ctgtttggaagctttcccactggtggtgctatttggggaagctgtgggac
ctgtaagagggggtctgagcaggtagaattacgtcagtgatgtggtggtg
ggtatctttgcctattctgtgtgctcctggttcttgctctgttcttgctc
tggatcacgttcttcctgtcataacctttcagccatgcactctcctgcaa
atgttaaccaaaataaacctttcccccatgagttgttttgataatatatt
gtggtcacagaaacacagaagtgactaatacatgtccctttcaaaatgct
cactccttcttcagtcttccaacatctggcttctattctgactactgctg
tcaacagttcttgcaaataagaattatggatgacacatttcaaaaattac
cttttctcataaaattgcttcaacctttcacctcatgacattttatattt
ctttaatttttatttttttgggagggtaggggagagctggttataggctg
tgcacacatgtaaccatgtctagcacttttctcccgttttgctactttct
catgtatgtatgtgcatggtatgcatacacgtttacatgtctgagtgcaa
tatgtgtgtgttttgtgtgtgtgtggtgtgtgcattcacactgatgtcct
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72868197_72869363
seq2: B6Ng01-136K24.b_47_1189

seq1  GAATTCCCAGAATGTCTGAAAACCTTGAGCACGATGCTAATCTATCACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAATGTCTGAAAACCTTGAGCACGATGCTAATCTATCACGT  50

seq1  CATCACTTCTGGAACTCCAGGAGATAAACCGTCCCAGATGCATTCATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTCTGGAACTCCAGGAGATAAACCGTCCCAGATGCATTCATCCA  100

seq1  TTCTCAACCAGTATTTCTTGCCACTGGGACTCATTGTGTAAGGATAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCAGTATTTCTTGCCACTGGGACTCATTGTGTAAGGATAGCTG  150

seq1  TGGTCTGTCTCTCTTCCCAGCTTCCCTTGCTCTGTAGTCCCTACCAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTCTCTCTTCCCAGCTTCCCTTGCTCTGTAGTCCCTACCAAGGT  200

seq1  CTTCCCTCCAGACAGCGCTAAGTGAACCCCCAGGAATCATCTCACCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCAGACAGCGCTAAGTGAACCCCCAGGAATCATCTCACCTGTA  250

seq1  AGATGTCAGTTAGGGAAGCATGAAAGAACACCAAGCTCCTCTTCATAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGTTAGGGAAGCATGAAAGAACACCAAGCTCCTCTTCATAGAC  300

seq1  ATCTCATTGAACTGAAAACTTCCAAATTGCTCTACCTCTGGGTGACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTGAACTGAAAACTTCCAAATTGCTCTACCTCTGGGTGACTTGA  350

seq1  TGTTTTGACATGTCTGCGTTTCTATATGTTTGCCCAGTTGGAGATCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGACATGTCTGCGTTTCTATATGTTTGCCCAGTTGGAGATCTAAA  400

seq1  AATATATGATGAAATTTCTTTTGATCTTCTTTGTTGAACATCTGAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGATGAAATTTCTTTTGATCTTCTTTGTTGAACATCTGAAAAAG  450

seq1  TTTACTTAGCATGTGGTAACAATTTTAATTTGGGAGCATGCTGATAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGCATGTGGTAACAATTTTAATTTGGGAGCATGCTGATAATAA  500

seq1  AAAGATGTTATGTGCATGCGTGCATCCACAAGTCAAAAATGAGTTCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTATGTGCATGCGTGCATCCACAAGTCAAAAATGAGTTCACAT  550

seq1  TTTATTTGTTCTCTGCATTGAGCTTGCCCAACTCTGTTTTAATAAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTCTCTGCATTGAGCTTGCCCAACTCTGTTTTAATAAACATG  600

seq1  ACTATTAAGCTTGTGGCTTTTGCTAAGTCAATGCAAAGTAAACAAAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAGCTTGTGGCTTTTGCTAAGTCAATGCAAAGTAAACAAAGTCT  650

seq1  GAGTCAATCAAATTTTTGATATTATCTATGCCTGGTACCTAGTAATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATCAAATTTTTGATATTATCTATGCCTGGTACCTAGTAATTTTA  700

seq1  TGGATTTCGGGCATCTGCTGTAACATGCTTATTTGACTGCTCAGTGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCGGGCATCTGCTGTAACATGCTTATTTGACTGCTCAGTGAAAA  750

seq1  TATCATATGTAGTGCCTGTGAGCAATGTGAATAGGTAACGTGTTTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATGTAGTGCCTGTGAGCAATGTGAATAGGTAACGTGTTTTTAAA  800

seq1  AATATTATGAATTGCTAATGAAAGTCATTTTAAGCAAAAAAAAAAAAAAT  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATATTATGAATTGCTAATGAAAGTCATTTTAAGC-AAAAAAAAAAAAAT  849

seq1  CCCCAACATTATAATACAGCAATGCTATACTTTGAAAAACAATTTTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACATTATAATACAGCAATGCTATACTTTGAAAAACAATTTTTACA  899

seq1  CCCACGTCAATTTGAAAGAATATTTCCTAAATAAAGTGTTCCCTCTTTAT  950
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CCCACGTCAATTTGAAAG-ATATTTCCT-AATAAAGTGTTCCCTCTTTAT  947

seq1  CCTCGTGCCATATGTGAAATGTGAGGATGTGACGGGAATTTTTATACATT  1000
       |||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  -CTCGTG-CATATGTGAAATGTGAGGATGTGACGGGAA-TTTTATACATT  994

seq1  TCTCAGTGGTTTCATTATTTCAGGTTTTTAAACTCCTTTTTAAGAAAAAG  1050
      ||||||| | |||||||||||||  ||||||||||  |||||||||||  
seq2  TCTCAGT-GCTTCATTATTTCAG--TTTTAAACTC--TTTTAAGAAAA--  1037

seq1  GAAAAATTTTACATCTAGTATTTGATAGCACATTGCATTACTGTTCTCTG  1100
        |||||||  ||||||||| ||||||||||| |||| ||||| ||||||
seq2  -GAAAATTTACCATCTAGTA-TTGATAGCACA-TGCA-TACTG-TCTCTG  1082

seq1  TTTCCTTATA-TCATAAAGAACATTTATTAG-ATTATTGGCTTTTACAAC  1148
      ||  |||| | |||| |||||||  |||||| || |||||| ||||||  
seq2  TT--CTTAAATTCAT-AAGAACA--TATTAGAATAATTGGCCTTTACA--  1125

seq1  TATTTTTGAGAGCCCATGA  1167
       |||||||| |||| ||||
seq2  CATTTTTGA-AGCCTATGA  1143

seq1: chr16_73037946_73038467
seq2: B6Ng01-136K24.g_69_590 (reverse)

seq1  CCCAAAAAAATAAAAATTAAAGAAATATAAAATGTCATGAGGTGAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAAATAAAAATTAAAGAAATATAAAATGTCATGAGGTGAAAGGT  50

seq1  TGAAGCAATTTTATGAGAAAAGGTAATTTTTGAAATGTGTCATCCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAATTTTATGAGAAAAGGTAATTTTTGAAATGTGTCATCCATAAT  100

seq1  TCTTATTTGCAAGAACTGTTGACAGCAGTAGTCAGAATAGAAGCCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTGCAAGAACTGTTGACAGCAGTAGTCAGAATAGAAGCCAGATG  150

seq1  TTGGAAGACTGAAGAAGGAGTGAGCATTTTGAAAGGGACATGTATTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGACTGAAGAAGGAGTGAGCATTTTGAAAGGGACATGTATTAGTC  200

seq1  ACTTCTGTGTTTCTGTGACCACAATATATTATCAAAACAACTCATGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGTTTCTGTGACCACAATATATTATCAAAACAACTCATGGGGG  250

seq1  AAAGGTTTATTTTGGTTAACATTTGCAGGAGAGTGCATGGCTGAAAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTATTTTGGTTAACATTTGCAGGAGAGTGCATGGCTGAAAGGTT  300

seq1  ATGACAGGAAGAACGTGATCCAGAGCAAGAACAGAGCAAGAACCAGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGAAGAACGTGATCCAGAGCAAGAACAGAGCAAGAACCAGGAGC  350

seq1  ACACAGAATAGGCAAAGATACCCACCACCACATCACTGACGTAATTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAATAGGCAAAGATACCCACCACCACATCACTGACGTAATTCTAC  400

seq1  CTGCTCAGACCCCCTCTTACAGGTCCCACAGCTTCCCCAAATAGCACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGACCCCCTCTTACAGGTCCCACAGCTTCCCCAAATAGCACCAC  450

seq1  CAGTGGGAAAGCTTCCAAACAGGAGCCTAGGAGACATCTCACCTCCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAAGCTTCCAAACAGGAGCCTAGGAGACATCTCACCTCCAAGC  500

seq1  AGGGGTTGATGAGCAGGAATTC  522
      ||||||||||||||||||||||
seq2  AGGGGTTGATGAGCAGGAATTC  522