BAC Information

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BAC

Clone NameB6Ng01-137G24
Chromosome16 (Build37)
Map Location 85,121,500 - 85,251,696
singlet/doubletdoublet
Overlap geneApp
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137G24.bB6Ng01-137G24.g
ACCDH936955DH936956
length1,1281,035
definitionDH936955|Mus musculus domesticus DNA, BAC clone: B6Ng01-137G24, 5' end.DH936956|Mus musculus domesticus DNA, BAC clone: B6Ng01-137G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,121,500 - 85,122,632)(85,250,719 - 85,251,696)
sequence
gaattcactgtatagaccagcgtgacttcaaactcagagatcacttgcct
gtgcctcctgagtgctgggattacaggcgtgtgccactaggccagcttgt
atctgagttttcgttagaaaattccactggagaattaaccattttgaaat
aaaacaaaacatacaaacaaacaagaactcccttcgatgttgcggccgct
caactcttccacaggaggcccctgtcatctcccaccaatccaggaaactg
gaagtctcattctccaccagaggcaaagttgtgtcccaaacagaatgttc
tgtgaacttgatcttagccgctcacccgagagtttgaaggaaattcaaag
cccggatcttagagatcaaaatgtacatcttgccaattttactgaaataa
gcaggtgggtaacagggcagggaagttaaagaaagtcaaatcatagtcag
ccacctgtggggaaatccctggcgtggaggctaagggggggcttgtttgt
ggtcactgcaaaccttattgtgagccctactctgtcccaaagatttccac
ggttagcacaccttgccatcttatccctaaccaaagaggagttacagaac
tttcactggaagttggtgaatctatcatcaaaagaatcccatcctcacct
tgaggaccatttccctcagtaagagcctcacagcctcttcactcccacag
gccaggtgagctcaccacctctcactgaacgcaaatgcaggagagactgt
ttccttctgcaaagagaatttaagtaacaagttctctcctgggatagtca
aagcccaagaaagacgccacgatcctgtctgcttcctggaaatcacgacc
ttgggcagtcctttcccataatgcattagtctgtctatgcagcagacaat
gcttgtcagaaatggggatgtgcaagttcaaagtaaggtcatgacattgc
gctcactcattgttgggcaatcttaagtgataaggttatctctgctgaca
aaaagagccagttcagccaaataaagtataaaaattggtatggcaggcag
ctcttgggtgagtcactggccccagaatgagccagggatgtcacccattt
aaagggagaatagagaagaggggggggg
gaattctctgtttagctctgttctccatttttataggattatttggttct
ctggagtttaacttcttgagttctttgtatataatggatattagtcctct
ggagagaagtctggtgtaattctgataggtctgcctttatatgttacttg
atcttttcccttactgcttttaatattctttctttgttttgtgcatttga
tgttttgactattgtgatgggaggaatttcttttcttgtccagtctgttt
ggagttctgtaggcttcttgtatattcatgggcatctctttcattgggtt
agggaagttttttttctatagttttgttgaagatatttactggcccttta
agttgggaatcttcactctcttctttacctattatccttaggtttgatct
cattttttcctggatctcctgggtgtttcaggttaggatctttttacatt
ttgcattttctttgactgttgtatcaatgttttctatggtatcttctgca
cctgagattctctcttctaactcttgtattctgttggtaatacttgcatt
gttgtaacccctgaattactgatactagagaaacttcggtgtggtgtaca
cacagtttgcctctgcattccctgacttcacacacacacacacacacaca
cacacacacacacacaccctccagaagctcccatcctccctccagcacgt
ggcaagcatgatatgcagacagctggttcctgtgctgcatcctcctgcag
catcccagggctccctccctctcccctagtgttagaatggcactacccat
aaaactcccccttaatgagaacattctgaggagacatcctcctgcctttg
tgtctccaaacccaacagtccttctgataagcagcaaactccaagtgcct
ctatttgagaccttagagaaataacagctcaagggagacatggagaaaaa
aggtacatacgtcaggtcacagacagtttatgactaggcataaaattagt
cctgaacaccattaacccactttctgcttcagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85121500_85122632
seq2: B6Ng01-137G24.b_49_1176

seq1  GAATTCACTGTATAGACCAGCGTGACTTCAAACTCAGAGATCACTTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATAGACCAGCGTGACTTCAAACTCAGAGATCACTTGCCT  50

seq1  GTGCCTCCTGAGTGCTGGGATTACAGGCGTGTGCCACTAGGCCAGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCTGAGTGCTGGGATTACAGGCGTGTGCCACTAGGCCAGCTTGT  100

seq1  ATCTGAGTTTTCGTTAGAAAATTCCACTGGAGAATTAACCATTTTGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTTTTCGTTAGAAAATTCCACTGGAGAATTAACCATTTTGAAAT  150

seq1  AAAACAAAACATACAAACAAACAAGAACTCCCTTCGATGTTGCGGCCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACATACAAACAAACAAGAACTCCCTTCGATGTTGCGGCCGCT  200

seq1  CAACTCTTCCACAGGAGGCCCCTGTCATCTCCCACCAATCCAGGAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTCCACAGGAGGCCCCTGTCATCTCCCACCAATCCAGGAAACTG  250

seq1  GAAGTCTCATTCTCCACCAGAGGCAAAGTTGTGTCCCAAACAGAATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCATTCTCCACCAGAGGCAAAGTTGTGTCCCAAACAGAATGTTC  300

seq1  TGTGAACTTGATCTTAGCCGCTCACCCGAGAGTTTGAAGGAAATTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTTGATCTTAGCCGCTCACCCGAGAGTTTGAAGGAAATTCAAAG  350

seq1  CCCGGATCTTAGAGATCAAAATGTACATCTTGCCAATTTTACTGAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATCTTAGAGATCAAAATGTACATCTTGCCAATTTTACTGAAATAA  400

seq1  GCAGGTGGGTAACAGGGCAGGGAAGTTAAAGAAAGTCAAATCATAGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGGTAACAGGGCAGGGAAGTTAAAGAAAGTCAAATCATAGTCAG  450

seq1  CCACCTGTGGGGAAATCCCTGGCGTGGAGGCTAAGGGGGGGCTTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGGGGAAATCCCTGGCGTGGAGGCTAAGGGGGGGCTTGTTTGT  500

seq1  GGTCACTGCAAACCTTATTGTGAGCCCTACTCTGTCCCAAAGATTTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGCAAACCTTATTGTGAGCCCTACTCTGTCCCAAAGATTTCCAC  550

seq1  GGTTAGCACACCTTGCCATCTTATCCCTAACCAAAGAGGAGTTACAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCACACCTTGCCATCTTATCCCTAACCAAAGAGGAGTTACAGAAC  600

seq1  TTTCACTGGAAGTTGGTGAATCTATCATCAAAAGAATCCCATCCTCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGAAGTTGGTGAATCTATCATCAAAAGAATCCCATCCTCACCT  650

seq1  TGAGGACCATTTCCCTCAGTAAGAGCCTCACAGCCTCTTCACTCCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCATTTCCCTCAGTAAGAGCCTCACAGCCTCTTCACTCCCACAG  700

seq1  GCCAGGTGAGCTCACCACCTCTCACTGAACGCAAATGCAGGAGAGACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTGAGCTCACCACCTCTCACTGAACGCAAATGCAGGAGAGACTGT  750

seq1  TTCCTTCTGCAAAGAGAATTTAAGTAACAAGTTCTCTCCTGGGATAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGCAAAGAGAATTTAAGTAACAAGTTCTCTCCTGGGATAGTCA  800

seq1  AAGCCCAAGAAAGACGCCACGATCCTGTCTGCTTCCTGGAAATCACGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAGAAAGACGCCACGATCCTGTCTGCTTCCTGGAAATCACGACC  850

seq1  TTGGGCAGTCCTTTCCCATAATGCATTAGTCTGTCTATGCAGCAGACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGTCCTTTCCCATAATGCATTAGTCTGTCTATGCAGCAGACAAT  900

seq1  GCTTGTCAGAAATGGGGATGTGCAAGTTCAAAAGTAAGGTCATGACATTG  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTGTCAGAAATGGGGATGTGCAAGTTC-AAAGTAAGGTCATGACATTG  949

seq1  CGGCTCACTCATTGTTGGGCAATCTTAAGTGAT-AGGTTATCTCTGCTGA  999
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  C-GCTCACTCATTGTTGGGCAATCTTAAGTGATAAGGTTATCTCTGCTGA  998

seq1  CAAAAAGAGCCAGTTCAAGCCAAATTAAAGTATAAAAATGGGTATTGGCA  1049
      |||||||||||||||| ||||||| |||||||||||||| |||| |||||
seq2  CAAAAAGAGCCAGTTC-AGCCAAA-TAAAGTATAAAAATTGGTA-TGGCA  1045

seq1  GGGCAGCTCTTGGGTGAGTTCACTGGCCCCAAGGAATGAAGCCAGGGATG  1099
       ||||||||||||||||| ||||||||||||  ||||| |||||||||||
seq2  -GGCAGCTCTTGGGTGAG-TCACTGGCCCCA--GAATG-AGCCAGGGATG  1090

seq1  TCA-CCATTTATAGGGAG-ATAGAG--GAGGGGGGGGG  1133
      ||| ||||||| |||||| ||||||  |||||||||||
seq2  TCACCCATTTAAAGGGAGAATAGAGAAGAGGGGGGGGG  1128

seq1: chr16_85250719_85251696
seq2: B6Ng01-137G24.g_132_1099 (reverse)

seq1  GTACTGAAGCAGGAAGTGGGGTTAATGGGTGTTCAGGGACTAATTTTATG  50
      |||||||||||| |||| |||||||| |||||||| ||||||||||||||
seq2  GTACTGAAGCAGAAAGT-GGGTTAAT-GGTGTTCA-GGACTAATTTTATG  47

seq1  GCTAGTCAT-AACTGTCTGTGACCTGACGTATGTTTACCTTTTTTTCTCC  99
       |||||||| |||||||||||||||||||||||  |||| ||||||||||
seq2  CCTAGTCATAAACTGTCTGTGACCTGACGTATG--TACC-TTTTTTCTCC  94

seq1  ATGGTCTCCCTTGAGCTTGTTATTTCTCTAAGGTCTCAAATAGAGGCACC  149
      || ||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AT-GTCTCCCTTGAGC-TGTTATTTCTCTAAGGTCTCAAATAGAGGCACT  142

seq1  TGGAGTTCTGCTGCTTATCAGAAGGACTGTTGGGTTTTGGAGACACAAAG  199
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  TGGAGTT-TGCTGCTTATCAGAAGGACTGTTGGG-TTTGGAGACACAAAG  190

seq1  GCAGGGAGGATGTCTCCTCAGAATGTTCTCATTAAGGGGGAGTTTTATGG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-GGAGGATGTCTCCTCAGAATGTTCTCATTAAGGGGGAGTTTTATGG  239

seq1  GTAGTGCCATTCTAACACTAGGGGAGAGGGAGGGAGCCCTGGGATGCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCATTCTAACACTAGGGGAGAGGGAGGGAGCCCTGGGATGCTGC  289

seq1  AGGAGGATGCAGCACAGGAACCAGCTGTCTGCATATCATGCTTGCCACGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATGCAGCACAGGAACCAGCTGTCTGCATATCATGCTTGCCACGT  339

seq1  GCTGGAGGGAGGATGGGAGCTTCTGGAGGGTGTGTGTGTGTGTGTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGGAGGATGGGAGCTTCTGGAGGGTGTGTGTGTGTGTGTGTGTG  389

seq1  TGTGTGTGTGTGTGTGTGAAGTCAGGGAATGCAGAGGCAAACTGTGTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGAAGTCAGGGAATGCAGAGGCAAACTGTGTGTA  439

seq1  CACCACACCGAAGTTTCTCTAGTATCAGTAATTCAGGGGTTACAACAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCGAAGTTTCTCTAGTATCAGTAATTCAGGGGTTACAACAATG  489

seq1  CAAGTATTACCAACAGAATACAAGAGTTAGAAGAGAGAATCTCAGGTGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTACCAACAGAATACAAGAGTTAGAAGAGAGAATCTCAGGTGCA  539

seq1  GAAGATACCATAGAAAACATTGATACAACAGTCAAAGAAAATGCAAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACCATAGAAAACATTGATACAACAGTCAAAGAAAATGCAAAATG  589

seq1  TAAAAAGATCCTAACCTGAAACACCCAGGAGATCCAGGAAAAAATGAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATCCTAACCTGAAACACCCAGGAGATCCAGGAAAAAATGAGAT  639

seq1  CAAACCTAAGGATAATAGGTAAAGAAGAGAGTGAAGATTCCCAACTTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTAAGGATAATAGGTAAAGAAGAGAGTGAAGATTCCCAACTTAAA  689

seq1  GGGCCAGTAAATATCTTCAACAAAACTATAGAAAAAAAACTTCCCTAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGTAAATATCTTCAACAAAACTATAGAAAAAAAACTTCCCTAACC  739

seq1  CAATGAAAGAGATGCCCATGAATATACAAGAAGCCTACAGAACTCCAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGAGATGCCCATGAATATACAAGAAGCCTACAGAACTCCAAAC  789

seq1  AGACTGGACAAGAAAAGAAATTCCTCCCATCACAATAGTCAAAACATCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGACAAGAAAAGAAATTCCTCCCATCACAATAGTCAAAACATCAA  839

seq1  ATGCACAAAACAAAGAAAGAATATTAAAAGCAGTAAGGGAAAAGATCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAAACAAAGAAAGAATATTAAAAGCAGTAAGGGAAAAGATCAAG  889

seq1  TAACATATAAAGGCAGACCTATCAGAATTACACCAGACTTCTCTCCAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATAAAGGCAGACCTATCAGAATTACACCAGACTTCTCTCCAGAG  939

seq1  GACTAATATCCATTATATACAAAGAACTC  978
      |||||||||||||||||||||||||||||
seq2  GACTAATATCCATTATATACAAAGAACTC  968