BAC Information

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BAC

Clone NameB6Ng01-139B15
Chromosome16 (Build37)
Map Location 36,559,710 - 36,560,766
singlet/doubletsinglet
Overlap geneCasr
Upstream geneSema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3
Downstream geneEG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139B15.bB6Ng01-139B15.g
ACCDH938174DH938175
length1,2521,050
definitionDH938174|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B15, 5' end.DH938175|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaattctgaatatctatgctccaaatgcaagggcagccacatt
cattaaagtaactttagtaaagctcaaagcacacattgcacctaacacaa
taatagtgggagacttcaacataccactttcatcaatggacagatcatgg
aaacagaaactaaacagggacacagtgaaactaacagaagttatgaaaca
aatggacttgacagatatctacagaaccttttatcctaaaacaaaaggat
ataccttcttcttagcacctcatggtaccttctccaaaactgaccatata
attggtcacaaaacaggcctcaacaaatacaaaaatattgaaattgtccc
agatcaccatggactagggcttcaataacaacataaataatagaaagcca
acattcacgtggaaactgaacaacactcttctcaatgataccttggtcaa
ggaaggaataaagaaagaaattaaggactttttagactttaatgaaaatg
aagccacaacatacccaaacttatgggacacaatgaaagcatttctaaga
ggaaaactcatagccctgagtgcctccaaaaagaaactagagagagcaca
aactagcagcttgacaacacacataaaagctttagaacaaaaggaagcaa
attcacccaagaggagtagactgcaggaaataatcaaactcaggggtgaa
atcaaccaagtagaaaccagaagaattattcaaagaatcaaccaaacaag
gagctggttctttgagaaaatcaacaagatagataaacccttagccagac
tcactagagggcacagggaaagcatcctaattaacaaaatcagaaatgaa
aagggaggcataacaacagatcctgaagaaatccaaacaccatcagatcc
ttctacaaaaggctatactcgacaaactggaaacctggatgaaatggaca
aatttctagacagataccaggtacaaagttaaatcaggataaggttaatg
atctaaacagtcctatatcccctaaggaatagaagcagtcattatagtct
ccaccaaaaaaaagcccaggaccagatgggtttagtgcagagtctatcag
acttcaggaagacctaatcagttggcaaactattcccaaaaatagaggcg
agggtctctacccattcattctatggaggtcatacctgtatcctaaccgg
aaggatcccacaagatgagagaacttcagacatttctctttatgaatatt
ta
gaattcattccccctcccatttggactccaggctccaggttcccaaagtg
gcatgcttggggtgttccctctggaggacttggaaaagtgagcttttaaa
ttggccctgtgaacagggcaaggctttgtgataggcagagaaaaaaagaa
aacacaaaggaagaaatcagggagaccagggaacagtgagggagcaggag
accaacatctttgagagcagaggaaccccgggccagcccctgtcattcag
gagctgaccctggggagttttgctaagggaacacatgtggtcttcatgct
gataactcacatcatcaactcttttccataatcaacgaatcaaaccatgt
ttgtagattaagacagagtaattggtcttatttttttttaccggtatagg
aggttctttagaagctgtgtaaactgtttaaagtaacctccatctatgcc
agtgtcccttgttttcctcatttttcctttgttgaactggatcctgcaaa
gttcaggcattagctgttccctctcctgcagacttaaggatgacgttgta
actagagaatggattgggctgggtgcaggtgcaaggctgatgagggggta
gtgcatgacttataaacagagacacaaaaatgtaaaaaacatcagtattc
acttaacgtgtttgtagagcctagctacacaccagatcctgggaacaaga
tggtcaataagaccagacaaggaacctgccctcctggtgcttacagatgc
ttgggggagggcagctgtcagtaaaatgattatcgactatgtaattgcaa
gctaacataaaccctctgagggaaagacacaaagttcactgtgggtgtac
atagatgggtctgtgagacttggggaaggctttcccaacagagctcactg
accctgaggttctagggtgatcaggatgaagaaatctgatttgaggtgag
tcagaccgtttgattaggatagcatttggctgctggtcaccaaacatgac
tggctgctatgaaactttgtctctgaagtgtgtccacgtgctgtgtgtta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36559710_36560766
seq2: B6Ng01-139B15.g_67_1116 (reverse)

seq1  TAACACCAACAGCACGTGGACACACATCAAGGGACAAAAGTTTCATAGCA  50
      ||||||  ||||||||||||||||| || || ||| ||||||||||||||
seq2  TAACAC--ACAGCACGTGGACACACTTC-AGAGAC-AAAGTTTCATAGCA  46

seq1  GCCAGTC-TGTTTGGTGACCAGCAGCCAAATGCTATTCCTAATCAAAACG  99
      ||||||| ||||||||||||||||||||||||||| |||||||| |||||
seq2  GCCAGTCATGTTTGGTGACCAGCAGCCAAATGCTA-TCCTAATC-AAACG  94

seq1  GTCTGACCTCACCTCAAAAATCAGATTTCTTCATCCTGATCACCCTAGAA  149
      |||||| ||||||||  |||||||||||||||||||||||||||||||||
seq2  GTCTGA-CTCACCTC--AAATCAGATTTCTTCATCCTGATCACCCTAGAA  141

seq1  CCTCAGGGTCAGTGAGCTCTGTTGGGAAAGCCTT-CCCAAGTCTCACAGA  198
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTCAGGGTCAGTGAGCTCTGTTGGGAAAGCCTTCCCCAAGTCTCACAGA  191

seq1  CCCATCTATGTACACCCACAGTGGACTTTGTGTCTTTCCCTCAGAGGGTT  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCATCTATGTACACCCACAGTGAACTTTGTGTCTTTCCCTCAGAGGGTT  241

seq1  TATGTTAGCTTGCAATTACATAGTCGATAATCATTTTACTGACAGCTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGCTTGCAATTACATAGTCGATAATCATTTTACTGACAGCTGCC  291

seq1  CTCCCCCAAGCATCTGTAAGCACCAGGAGGGCAGGTTCCTTGTCTGGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAAGCATCTGTAAGCACCAGGAGGGCAGGTTCCTTGTCTGGTCT  341

seq1  TATTGACCATCTTGTTCCCAGGATCTGGTGTGTAGCTAGGCTCTACAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACCATCTTGTTCCCAGGATCTGGTGTGTAGCTAGGCTCTACAAAC  391

seq1  ACGTTAAGTGAATACTGATGTTTTTTACATTTTTGTGTCTCTGTTTATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAAGTGAATACTGATGTTTTTTACATTTTTGTGTCTCTGTTTATAA  441

seq1  GTCATGCACTACCCCCTCATCAGCCTTGCACCTGCACCCAGCCCAATCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCACTACCCCCTCATCAGCCTTGCACCTGCACCCAGCCCAATCCA  491

seq1  TTCTCTAGTTACAACGTCATCCTTAAGTCTGCAGGAGAGGGAACAGCTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTTACAACGTCATCCTTAAGTCTGCAGGAGAGGGAACAGCTAA  541

seq1  TGCCTGAACTTTGCAGGATCCAGTTCAACAAAGGAAAAATGAGGAAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAACTTTGCAGGATCCAGTTCAACAAAGGAAAAATGAGGAAAACA  591

seq1  AGGGACACTGGCATAGATGGAGGTTACTTTAAACAGTTTACACAGCTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACTGGCATAGATGGAGGTTACTTTAAACAGTTTACACAGCTTCT  641

seq1  AAAGAACCTCCTATACCGGTAAAAAAAAATAAGACCAATTACTCTGTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTCCTATACCGGTAAAAAAAAATAAGACCAATTACTCTGTCTT  691

seq1  AATCTACAAACATGGTTTGATTCGTTGATTATGGAAAAGAGTTGATGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAAACATGGTTTGATTCGTTGATTATGGAAAAGAGTTGATGATG  741

seq1  TGAGTTATCAGCATGAAGACCACATGTGTTCCCTTAGCAAAACTCCCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATCAGCATGAAGACCACATGTGTTCCCTTAGCAAAACTCCCCAG  791

seq1  GGTCAGCTCCTGAATGACAGGGGCTGGCCCGGGGTTCCTCTGCTCTCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTCCTGAATGACAGGGGCTGGCCCGGGGTTCCTCTGCTCTCAAA  841

seq1  GATGTTGGTCTCCTGCTCCCTCACTGTTCCCTGGTCTCCCTGATTTCTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGTCTCCTGCTCCCTCACTGTTCCCTGGTCTCCCTGATTTCTTC  891

seq1  CTTTGTGTTTTCTTTTTTTCTCTGCCTATCACAAAGCCTTGCCCTGTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTTTCTTTTTTTCTCTGCCTATCACAAAGCCTTGCCCTGTTCA  941

seq1  CAGGGCCAATTTAAAAGCTCACTTTTCCAAGTCCTCCAGAGGGAACACCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAATTTAAAAGCTCACTTTTCCAAGTCCTCCAGAGGGAACACCC  991

seq1  CAAGCATGCCACTTTGGGAACCTGGAGCCTGGAGTCCAAATGGGAGGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGCCACTTTGGGAACCTGGAGCCTGGAGTCCAAATGGGAGGGGG  1041

seq1  AATGAATTC  1057
      |||||||||
seq2  AATGAATTC  1050