BAC Information

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BAC

Clone NameB6Ng01-140E23
Chromosome16 (Build37)
Map Location 48,449,341 - 48,568,413
singlet/doubletdoublet
Overlap geneMorc1
Upstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023
Downstream geneTrat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E23.bB6Ng01-140E23.g
ACCDH939076DH939077
length1,0451,014
definitionDH939076|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E23, 5' end.DH939077|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,449,341 - 48,450,398)(48,567,397 - 48,568,413)
sequence
gaattctgacacctgaactcagtgctgacatcagacttttcctaactacc
ttaagaaatcgttgtcgattacagatgaagcttcagacgtaatttacttt
ggaacatccaagaaacgcttgtcgaccttgaagttcatcgggcaatatgg
taacgggcttaagaggtgagaattgtttttccttaagttatccattattt
gcgcatactgaaaacattatgcaagcaaaattttctttctaacaacctgg
caccttaaactcagtggctgagttttagggaccatcaaaactcactttgg
aatctttatacccataactgacgcagctctttgcaacatgaaaaagcttt
tcgtgtagaacaaggtgagtctttcacaggcacccagaagcggtccagtg
tcactgggtctttacatctgcttgcttctcaaagcatatttgagcatcgg
tgtggtatccacagctttctttagtttgtttcaatgtaagtgacacgtgt
gtggttccatccagggcccagtaattattcttttgtgccttggctggaac
ttctctcaggcagctgtatctcaagcaagagtgtcaagccggatctgcta
aagttcgtatgttctcctctgagaagtaaaggaatattcgtgcacccctg
gggatgagtccagcagctgggttatggaaaagaacaacctgttatagtca
acaaaatcatgccccggctacttctctattactgtctgtatgtaaaccac
tgtgctcccatttttaatatagcggctccatgagaatcggcaaagactgt
attcttttcacaaagaaggagagaccatgacctgtctgttcttctctcag
actttctgtgaaaaagaaggtctcactgaggtagagatggggctttcttt
ttattacgatgccagcagtgcagttttcatttaccctctcagaagtggaa
ggaggctgtactccttgccgattatgactaaaattgggctatgttgagga
tgacagaaggtgtctgttgcactgggttaccgaggcttttctgga
gaattcaagaaagaagttccaggctactttccctgtaacatgtacttaca
gttaatgtacttacactgaatcacccttcccagtttctttagaaaggatt
tccacaccatttcagctgtgatcagaaattactgaactaacgttctattg
tggttggaaatttgtaaatcatcattaggtttggtcagaaggagactgtt
tttttaatctgaggatgtgatatatttactatttcaataatggtctgttg
cgtgccctgtacctaccaggcacagagataggtaatactgagtcatggta
ggcaaagctgaagtgtttccctgcctccaggaactttgcagtctactatt
ccagtagctttgaacttaatacatggtctagtctggggtgtgcccaaaag
caagcatttaaaagtcaatgaccactgaattaaccagctgcccagggtcg
ggtcactgataagtattgaatacttgaaaatatgttaagattctaggaat
gtttgcccatgtagatttttgtggaaactttcctttcaggacagtaagac
agtgaggattcttatatcctttgaacaagatttctacagaagtggttcta
aattgctgttagaattggaatgagctgaatctataatctagacttaaatt
tgtgtgagggaaaaaaaattctactgagagagagagagagagagagagag
agagagagagagagagagaaggcagaatggatggctcccatctgttgact
tcataagctgccattaagatctccactcaataatggctaacatagtccaa
ctttaaacaaacaataagctaatcaaggctttgtgatgacactatcaata
tccaatggtcaacagtgacctttaaaggaaggaaaacaacatatttcaga
gacggtcaatcccaatgtgttgaatgtcttctcaaagctttcaggatgat
ttccataagaacgactttttaaaaggagatatttcagaaaagaaacttct
gtagtttattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48449341_48450398
seq2: B6Ng01-140E23.b_47_1091

seq1  GAATTCTGACACCTGAACTCAGTGCTGACATCAGACTTTTCCTAACTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACACCTGAACTCAGTGCTGACATCAGACTTTTCCTAACTACC  50

seq1  TTAAGAAATCGTTGTCGATTACAGATGAAGCTTCAGACGTAATTTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATCGTTGTCGATTACAGATGAAGCTTCAGACGTAATTTACTTT  100

seq1  GGAACATCCAAGAAACGCTTGTCGACCTTGAAGTTCATCGGGCAATATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCCAAGAAACGCTTGTCGACCTTGAAGTTCATCGGGCAATATGG  150

seq1  TAACGGGCTTAAGAGGTGAGAATTGTTTTTCCTTAAGTTATCCATTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGGCTTAAGAGGTGAGAATTGTTTTTCCTTAAGTTATCCATTATTT  200

seq1  GCGCATACTGAAAACATTATGCAAGCAAAATTTTCTTTCTAACAACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATACTGAAAACATTATGCAAGCAAAATTTTCTTTCTAACAACCTGG  250

seq1  CACCTTAAACTCAGTGGCTGAGTTTTAGGGACCATCAAAACTCACTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAAACTCAGTGGCTGAGTTTTAGGGACCATCAAAACTCACTTTGG  300

seq1  AATCTTTATACCCATAACTGACGCAGCTCTTTGCAACATGAAAAAGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTATACCCATAACTGACGCAGCTCTTTGCAACATGAAAAAGCTTT  350

seq1  TCGTGTAGAACAAGGTGAGTCTTTCACAGGCACCCAGAAGCGGTCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTAGAACAAGGTGAGTCTTTCACAGGCACCCAGAAGCGGTCCAGTG  400

seq1  TCACTGGGTCTTTACATCTGCTTGCTTCTCAAAGCATATTTGAGCATCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGTCTTTACATCTGCTTGCTTCTCAAAGCATATTTGAGCATCGG  450

seq1  TGTGGTATCCACAGCTTTCTTTAGTTTGTTTCAATGTAAGTGACACGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATCCACAGCTTTCTTTAGTTTGTTTCAATGTAAGTGACACGTGT  500

seq1  GTGGTTCCATCCAGGGCCCAGTAATTATTCTTTTGTGCCTTGGCTGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCATCCAGGGCCCAGTAATTATTCTTTTGTGCCTTGGCTGGAAC  550

seq1  TTCTCTCAGGCAGCTGTATCTCAAGCAAGAGTGTCAAGCCGGATCTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAGGCAGCTGTATCTCAAGCAAGAGTGTCAAGCCGGATCTGCTA  600

seq1  AAGTTCGTATGTTCTCCTCTGAGAAGTAAAGGAATATTCGTGCACCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCGTATGTTCTCCTCTGAGAAGTAAAGGAATATTCGTGCACCCCTG  650

seq1  GGGATGAGTCCAGCAGCTGGGTTATGGAAAAGAACAACCTGTTATAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGTCCAGCAGCTGGGTTATGGAAAAGAACAACCTGTTATAGTCA  700

seq1  ACAAAATCATGCCCCGGCTACTTCTCTATTACTGTCTGTATGTAAACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCATGCCCCGGCTACTTCTCTATTACTGTCTGTATGTAAACCAC  750

seq1  TGTGCTCCCATTTTTAATATAGCGGCTCCATGAGAATCGGCAAAGACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCATTTTTAATATAGCGGCTCCATGAGAATCGGCAAAGACTGT  800

seq1  ATTCTTTTCACAAAGAAGGAAGAGACCATGACCTGTCTGTTCTTCTCTCA  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTCTTTTCACAAAGAAGG-AGAGACCATGACCTGTCTGTTCTTCTCTCA  849

seq1  GACTTTCTGTGAAAAAGAAGGTCTCACTGAGGTAAGAGATGGGGCTTTCT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACTTTCTGTGAAAAAGAAGGTCTCACTGAGGT-AGAGATGGGGCTTTCT  898

seq1  TTTTATTACCATGGCAACAGTGCAGTTTTCATTTACCCTCTCAGGAGGTG  950
      ||||||||| ||| || ||||||||||||||||||||||||||| ||  |
seq2  TTTTATTACGATGCCAGCAGTGCAGTTTTCATTTACCCTCTCAGAAGTGG  948

seq1  AAGGAGGCTGTAACTCCTTGCAGATTATGACTTAGAAATTTGGGCATATG  1000
      ||||||||||| ||||||||| ||||||||||   ||| |||||| ||||
seq2  AAGGAGGCTGT-ACTCCTTGCCGATTATGACT---AAAATTGGGC-TATG  993

seq1  TTTGAGGAATGGACAGAAGGTGTCTGTATGCACTGGGGTCACCAGAGGCC  1050
       |||||||   |||||||||||||||| |||||| |||| ||| ||||| 
seq2  -TTGAGGA--TGACAGAAGGTGTCTGT-TGCACT-GGGTTACC-GAGGCT  1037

seq1  TTTCTGGA  1058
      ||||||||
seq2  TTTCTGGA  1045

seq1: chr16_48567397_48568413
seq2: B6Ng01-140E23.g_70_1083 (reverse)

seq1  AAATAGATAAA-TACAGAAGTTTCTATCTGGAAATATCTCCATTTTAAAA  49
      ||||| ||||| ||||||||||||| |   ||||||||||| ||| ||||
seq2  AAATA-ATAAACTACAGAAGTTTCTTTTCTGAAATATCTCCTTTTAAAAA  49

seq1  GTCGTTTCTTAATTGGAAATCACTCCTTGAAGCTTTGGGAAGACATTCAA  99
      |||| ||||||  ||||||||| ||||  |||||||| ||||||||||||
seq2  GTCG-TTCTTA--TGGAAATCA-TCCTGAAAGCTTTGAGAAGACATTCAA  95

seq1  CACATTGGGATTGACCGTCTCTG-AATATGTTGTTTTCCTTCC-TTAAAG  147
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  CACATTGGGATTGACCGTCTCTGAAATATGTTGTTTTCCTTCCTTTAAAG  145

seq1  GTCACTGTTGACCATTGGATATTGATAGTGTCATTCACAAAGCCTTGATT  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCACTGTTGACCATTGGATATTGATAGTGTCA-TCACAAAGCCTTGATT  194

seq1  AGCTTATTGTTTGTTTAAAGTTGGACTATGTTAGCCATTATTGAGTGGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTGTTTGTTTAAAGTTGGACTATGTTAGCCATTATTGAGTGGAG  244

seq1  ATCTTAATGGCAGCTTATGAAGTCAACAGATGGGAGCCATCCATTCTGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATGGCAGCTTATGAAGTCAACAGATGGGAGCCATCCATTCTGCC  294

seq1  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTAG  344

seq1  AATTTTTTTTCCCTCACACAAATTTAAGTCTAGATTATAGATTCAGCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTCCCTCACACAAATTTAAGTCTAGATTATAGATTCAGCTCA  394

seq1  TTCCAATTCTAACAGCAATTTAGAACCACTTCTGTAGAAATCTTGTTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTCTAACAGCAATTTAGAACCACTTCTGTAGAAATCTTGTTCAA  444

seq1  AGGATATAAGAATCCTCACTGTCTTACTGTCCTGAAAGGAAAGTTTCCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAAGAATCCTCACTGTCTTACTGTCCTGAAAGGAAAGTTTCCAC  494

seq1  AAAAATCTACATGGGCAAACATTCCTAGAATCTTAACATATTTTCAAGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTACATGGGCAAACATTCCTAGAATCTTAACATATTTTCAAGTA  544

seq1  TTCAATACTTATCAGTGACCCGACCCTGGGCAGCTGGTTAATTCAGTGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACTTATCAGTGACCCGACCCTGGGCAGCTGGTTAATTCAGTGGT  594

seq1  CATTGACTTTTAAATGCTTGCTTTTGGGCACACCCCAGACTAGACCATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTTTTAAATGCTTGCTTTTGGGCACACCCCAGACTAGACCATGT  644

seq1  ATTAAGTTCAAAGCTACTGGAATAGTAGACTGCAAAGTTCCTGGAGGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTCAAAGCTACTGGAATAGTAGACTGCAAAGTTCCTGGAGGCAG  694

seq1  GGAAACACTTCAGCTTTGCCTACCATGACTCAGTATTACCTATCTCTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACTTCAGCTTTGCCTACCATGACTCAGTATTACCTATCTCTGTG  744

seq1  CCTGGTAGGTACAGGGCACGCAACAGACCATTATTGAAATAGTAAATATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGTACAGGGCACGCAACAGACCATTATTGAAATAGTAAATATA  794

seq1  TCACATCCTCAGATTAAAAAAACAGTCTCCTTCTGACCAAACCTAATGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCTCAGATTAAAAAAACAGTCTCCTTCTGACCAAACCTAATGAT  844

seq1  GATTTACAAATTTCCAACCACAATAGAACGTTAGTTCAGTAATTTCTGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACAAATTTCCAACCACAATAGAACGTTAGTTCAGTAATTTCTGAT  894

seq1  CACAGCTGAAATGGTGTGGAAATCCTTTCTAAAGAAACTGGGAAGGGTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGAAATGGTGTGGAAATCCTTTCTAAAGAAACTGGGAAGGGTGA  944

seq1  TTCAGTGTAAGTACATTAACTGTAAGTACATGTTACAGGGAAAGTAGCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTAAGTACATTAACTGTAAGTACATGTTACAGGGAAAGTAGCCT  994

seq1  GGAACTTCTTTCTTGAATTC  1017
      ||||||||||||||||||||
seq2  GGAACTTCTTTCTTGAATTC  1014