BAC Information

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BAC

Clone NameB6Ng01-140L13
Chromosome16 (Build37)
Map Location 39,301,667 - 39,362,305
singlet/doubletdoublet
Overlap genenone
Upstream gene4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140L13.bB6Ng01-140L13.g
ACCDH939371DH939372
length1,0421,019
definitionDH939371|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L13, 5' end.DH939372|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,301,667 - 39,302,720)(39,361,284 - 39,362,305)
sequence
gaattccaggacatatagctgcatcacatagttctaggatgatgatgacc
ctttctattttgagagaggtatgtaattgttgacctctcagcccttttgc
tgcccctccccctttctatttgttgttggcttttgctttggctccagggt
ttcacaccattaaccagataggatctgcctagtccctattaatatgtaga
gaatggcagagaacatccttactttaataaatacatttactttaataaga
ttattggttgccatgggctaggcaaataaaggtctatctctctgacctcc
agggccagactgcccatggtatttgcaaggaaatatgacaataaagatta
tggaatctctgtgtttgcagtcctgatgaaaatgctggttcctggtctga
ggcacaggttgatgctgggccgcttggaaggggttcagcactcatagtca
ccaaggtttctgagcacctttcctttctgcttacacttggcctttcttga
gcaattccttttctgtatacacctgtcgccccacacagcttcctaccata
caatggatatttccaaaatcccaactttccttctaaatgcggtaacccca
gagtttctttctctagctccttcaaagggacctgacgggcctttcattga
gcactttgttaaggaatcagctctccccttcccacttggcaggctgattc
tcttctcataaattattgcactaaagctttgaagaaaaagccattccttt
aatgctatataaggtatacttatagctcctttaaaaggtccccagtttaa
cagatttgtgtgaattcacgtgctttgtataggtctctttcccagatgac
tatcatgctacacgttgggaaagcctgtggaactgtgggtgagactaact
atagtatggagagtattctgtttttgagccttggcatgtttgacagctgt
gcatccaggtcagtcgcatacctgtctgagtctactattcatcattttcc
tagatctatcttacatgtaccatgagtgaataatccacataa
gaattctagttctgtgagagtaaaccagcaggagaaaatcaggccaacat
aagaaagtatcagggaaagaggagatacagaagagagatttcctacggta
cagaaataagcctagggtatcttttcagttctcttacagcatcctcagta
agcaatgagaggcactgctaagggcacttgaaggttaatgacaaccatcc
aatcatatcacagaagatgaagaacatttgatcaactataataactagtc
actaaaataactagaccacatcaaattatcttgtttgttaagataaatgt
attggattagtcattttgctaaatccatggattgatatttaactaattaa
actcatttcttctgtaagaagtgattaatccttttgatgttgcagtgtca
agtaaacaggatgagttgatttggagaggaacagaaactaaatagagttt
tcagcaaagaatatgtacatttaaatctatttagaattcaagccaccact
atggcttgtttaatttctaagattccctcgtcactgggcagcaaacaaag
aaatgtagaaaaatcaagactgttctcactagcttttgattcaactgaag
atacgaagcacagtagtgaacacgatgcattccagaactctaagccttat
tttgggaacaactagaaaggctttagtgactcagaaatactgtggctcta
tggagtgaaggtaatcagagatagctcatgcaagatgtgaattttaacac
attagaagaatagagaagcagaacacagttacaaatgataaagtctattc
tgtaatatgtagagcatacattggaatttgtatgagatacaaatcatcat
tgtaagagggataatcaaatgggtgagtgtactgatagcttctgatttaa
ttcccattgccctttcttacttattgacttctctaaatcagatatttgat
gtacatcccatgaatggtcgagaagaaaatatggggatgattgttttcat
gggatggaagcacaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_39301667_39302720
seq2: B6Ng01-140L13.b_49_1090

seq1  GAATTCCAGGACATATAGCTGCATCACATAGTTCTAGGATGATGATGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATATAGCTGCATCACATAGTTCTAGGATGATGATGACC  50

seq1  CTTTCTATTTTGAGAGAGGTATGTAATTGTTGACCTCTCAGCCCTTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTTTGAGAGAGGTATGTAATTGTTGACCTCTCAGCCCTTTTGC  100

seq1  TGCCCCTCCCCCTTTCTATTTGTTGTTGGCTTTTGCTTTGGCTCCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCCCCCTTTCTATTTGTTGTTGGCTTTTGCTTTGGCTCCAGGGT  150

seq1  TTCACACCATTAACCAGATAGGATCTGCCTAGTCCCTATTAATATGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCATTAACCAGATAGGATCTGCCTAGTCCCTATTAATATGTAGA  200

seq1  GAATGGCAGAGAACATCCTTACTTTAATAAATACATTTACTTTAATAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCAGAGAACATCCTTACTTTAATAAATACATTTACTTTAATAAGA  250

seq1  TTATTGGTTGCCATGGGCTAGGCAAATAAAGGTCTATCTCTCTGACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTTGCCATGGGCTAGGCAAATAAAGGTCTATCTCTCTGACCTCC  300

seq1  AGGGCCAGACTGCCCATGGTATTTGCAAGGAAATATGACAATAAAGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGACTGCCCATGGTATTTGCAAGGAAATATGACAATAAAGATTA  350

seq1  TGGAATCTCTGTGTTTGCAGTCCTGATGAAAATGCTGGTTCCTGGTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTCTGTGTTTGCAGTCCTGATGAAAATGCTGGTTCCTGGTCTGA  400

seq1  GGCACAGGTTGATGCTGGGCCGCTTGGAAGGGGTTCAGCACTCATAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGTTGATGCTGGGCCGCTTGGAAGGGGTTCAGCACTCATAGTCA  450

seq1  CCAAGGTTTCTGAGCACCTTTCCTTTCTGCTTACACTTGGCCTTTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTTCTGAGCACCTTTCCTTTCTGCTTACACTTGGCCTTTCTTGA  500

seq1  GCAATTCCTTTTCTGTATACACCTGTCGCCCCACACAGCTTCCTACCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCCTTTTCTGTATACACCTGTCGCCCCACACAGCTTCCTACCATA  550

seq1  CAATGGATATTTCCAAAATCCCAACTTTCCTTCTAAATGCGGTAACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATATTTCCAAAATCCCAACTTTCCTTCTAAATGCGGTAACCCCA  600

seq1  GAGTTTCTTTCTCTAGCTCCTTCAAAGGGACCTGACGGGCCTTTCATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTTTCTCTAGCTCCTTCAAAGGGACCTGACGGGCCTTTCATTGA  650

seq1  GCACTTTGTTAAGGAATCAGCTCTCCCCTTCCCACTTGGCAGGCTGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGTTAAGGAATCAGCTCTCCCCTTCCCACTTGGCAGGCTGATTC  700

seq1  TCTTCTCATAAATTATTGCACTAAAGCTTTGAAGAAAAAGCCATTCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATAAATTATTGCACTAAAGCTTTGAAGAAAAAGCCATTCCTTT  750

seq1  AATGCTATATAAGGTATACTTATAGCTCCTTTAAAAGGTCCCCAGTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATATAAGGTATACTTATAGCTCCTTTAAAAGGTCCCCAGTTTAA  800

seq1  CAGATTTGTGTGAATTCACGTGCTTTGTATAGGTCTCTTTCCCAGATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGTGTGAATTCACGTGCTTTGTATAGGTCTCTTTCCCAGATGAC  850

seq1  TATCATGCTACACGTTGGGAAAGCCTGTGGAACTGTGGGTGAGACTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGCTACACGTTGGGAAAGCCTGTGGAACTGTGGGTGAGACTAACT  900

seq1  ATAGTATGGAGAGTATTCTGTTTTTGAGCCTTGGCATGTTTGACAGCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATGGAGAGTATTCTGTTTTTGAGCCTTGGCATGTTTGACAGCTGT  950

seq1  GCATCCAGGTCAGGTCGCATACCTGTTCTGAGTCCTACCTATTCAATCAT  1000
      |||||||||||| |||||||||||| ||||||| ||| |||||| |||||
seq2  GCATCCAGGTCA-GTCGCATACCTG-TCTGAGT-CTA-CTATTC-ATCAT  995

seq1  TTTCCTAAGATCTATCTTACATGGTTACCATGAAGTTGGAAATAATCCAC  1050
      |||||| ||||||||||||||||  ||||||||    |  ||||||||||
seq2  TTTCCT-AGATCTATCTTACATG--TACCATGA----GTGAATAATCCAC  1038

seq1  ATAA  1054
      ||||
seq2  ATAA  1042

seq1: chr16_39361284_39362305
seq2: B6Ng01-140L13.g_69_1087 (reverse)

seq1  TGTATTGTGCTTCCATCCCATGCAAACAATCATCACAATATTTTCTTCTC  50
      |||||||||||||||||||||| ||||||||||| | |||||||||||||
seq2  TGTATTGTGCTTCCATCCCATGAAAACAATCATCCCCATATTTTCTTCTC  50

seq1  TGACCATCCATGGGATGTACATCAAAATATCTGATTTAGAGAAGTCAATA  100
       |||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  -GACCATTCATGGGATGTACATC-AAATATCTGATTTAGAGAAGTCAATA  98

seq1  AGTAAGAAAGGGCAATGGGAATAAAAATCAGAAGCTATCAGTACACTCAC  150
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  AGTAAGAAAGGGCAATGGGAAT-TAAATCAGAAGCTATCAGTACACTCAC  147

seq1  CCATTTGATTATCCCTCTTACATTGATGATTTGTATCTCATACAAATTCC  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATTTGATTATCCCTCTTACAATGATGATTTGTATCTCATACAAATTCC  197

seq1  AATGTATGCTCTACATATTACAGAATAGACTTTATCATTTGTAACTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGCTCTACATATTACAGAATAGACTTTATCATTTGTAACTGTGT  247

seq1  TCTGCTTCTCTATTCTTCTAATGTGTTAAAATTCACATCTTGCATGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTCTATTCTTCTAATGTGTTAAAATTCACATCTTGCATGAGCT  297

seq1  ATCTCTGATTACCTTCACTCCATAGAGCCACAGTATTTCTGAGTCACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGATTACCTTCACTCCATAGAGCCACAGTATTTCTGAGTCACTAA  347

seq1  AGCCTTTCTAGTTGTTCCCAAAATAAGGCTTAGAGTTCTGGAATGCATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTAGTTGTTCCCAAAATAAGGCTTAGAGTTCTGGAATGCATCG  397

seq1  TGTTCACTACTGTGCTTCGTATCTTCAGTTGAATCAAAAGCTAGTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTACTGTGCTTCGTATCTTCAGTTGAATCAAAAGCTAGTGAGAA  447

seq1  CAGTCTTGATTTTTCTACATTTCTTTGTTTGCTGCCCAGTGACGAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGATTTTTCTACATTTCTTTGTTTGCTGCCCAGTGACGAGGGAA  497

seq1  TCTTAGAAATTAAACAAGCCATAGTGGTGGCTTGAATTCTAAATAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAATTAAACAAGCCATAGTGGTGGCTTGAATTCTAAATAGATTT  547

seq1  AAATGTACATATTCTTTGCTGAAAACTCTATTTAGTTTCTGTTCCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACATATTCTTTGCTGAAAACTCTATTTAGTTTCTGTTCCTCTCC  597

seq1  AAATCAACTCATCCTGTTTACTTGACACTGCAACATCAAAAGGATTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACTCATCCTGTTTACTTGACACTGCAACATCAAAAGGATTAATC  647

seq1  ACTTCTTACAGAAGAAATGAGTTTAATTAGTTAAATATCAATCCATGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTACAGAAGAAATGAGTTTAATTAGTTAAATATCAATCCATGGAT  697

seq1  TTAGCAAAATGACTAATCCAATACATTTATCTTAACAAACAAGATAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAATGACTAATCCAATACATTTATCTTAACAAACAAGATAATTT  747

seq1  GATGTGGTCTAGTTATTTTAGTGACTAGTTATTATAGTTGATCAAATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTCTAGTTATTTTAGTGACTAGTTATTATAGTTGATCAAATGTT  797

seq1  CTTCATCTTCTGTGATATGATTGGATGGTTGTCATTAACCTTCAAGTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTCTGTGATATGATTGGATGGTTGTCATTAACCTTCAAGTGCC  847

seq1  CTTAGCAGTGCCTCTCATTGCTTACTGAGGATGCTGTAAGAGAACTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGTGCCTCTCATTGCTTACTGAGGATGCTGTAAGAGAACTGAAA  897

seq1  AGATACCCTAGGCTTATTTCTGTACCGTAGGAAATCTCTCTTCTGTATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCTAGGCTTATTTCTGTACCGTAGGAAATCTCTCTTCTGTATCT  947

seq1  CCTCTTTCCCTGATACTTTCTTATGTTGGCCTGATTTTCTCCTGCTGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCCTGATACTTTCTTATGTTGGCCTGATTTTCTCCTGCTGGTT  997

seq1  TACTCTCACAGAACTAGAATTC  1022
      ||||||||||||||||||||||
seq2  TACTCTCACAGAACTAGAATTC  1019