BAC Information

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BAC

Clone NameB6Ng01-140P19
Chromosome16 (Build37)
Map Location 6,237,557 - 6,365,226
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneAlg1, 5730409G15Rik, LOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140P19.bB6Ng01-140P19.g
ACCDH939572DH939573
length1,131505
definitionDH939572|Mus musculus domesticus DNA, BAC clone: B6Ng01-140P19, 5' end.DH939573|Mus musculus domesticus DNA, BAC clone: B6Ng01-140P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,364,094 - 6,365,226)(6,237,557 - 6,238,067)
sequence
gaattcttaccctttgacagggcaacaagtcatgttctcgttgcacatgt
tagtcatgcatttactgaggacgtgggaaagcaagtggctgctttcaggc
actttctcacaattgtcagcagaaaatcatcttgtatccagatagggaag
agaactttgaagttaatatccatgtcttttctctttagcagtccttttta
agaactttggagtgctgactcagtaggtaaagggactttccaccaaggct
taccaaacctgagttcagtccccaagaacacatgatggaaggagagaaac
aactcttacaagttgttttctgaccatcaaacatgaaccagtggtccaca
ttgggatttaattatgtaaattaaaaacacattcattttattttcttcat
ttttctaacagccttcctgtatagttcatgaagctaccaactactaactt
tagtcacagagcggtaagccagttaagaactgaaggagtacccaaactcc
ctgcagtccctccccttctccatctctgcctctcgaataactgctgaggc
tgatactgtgtcttctcacctctgctatgtccccagagcataaccatgct
ggtggcaactgtagtcaaatcccagagcccttaatagtaactgtataatc
ttggtcattatcttatgaaatacaacaacctcgtttataagaaaagaatg
acttctaccctgtcacataagccacctgggaggttcaaatgagccagtca
acacatggcatcttgcagagcagttgttagatactacacccaatgcagtg
ttttgttttgctccccaaaagcacaggtgcctgagctttaaggaccttgc
tttgattatgggagcctcatctctgcaaagagcaaggtgggacaggagca
atttgatgtttgctgcccctaagaggatacatttgagtgggcagccaaaa
ttgattccctgctgactgcctctctattagcaaagcatggagaacagttc
tgagtgtaaaagaaacacactcatatgggctgcatattgtgctcagaatc
aggcagtttcaatactgctatcccagtgatggggagaatacaacgatgaa
tgatgatggaatgaatgatgggattgaatga

tcagcagtgaacctagaacttccttaaactttcacagaactcagtgaact
tgattaacactgaaaacatcttgaacctccttgtaactcaggacactaag
caaggatttatttgcataataaagcactgactaaacccctcagatcaata
caagcactgaggccaccatccataatgacacaaggtaaaggggacacaga
tatgtagccatagtttttaagacctgtgccctcctgggcagtgaaggttt
tagtttccaatcttagttcttgttctcatctgtttgggatgagaacaact
tgttgaaaatagtgtcgagccaggcgtggtggtacacgcctttaatccca
gtatttgggaggcagaggcaggcagatttctgagttcgaggtcagcctgg
tctacagagtgagttccaggacagccagggctatacagagaaaccctgta
tcggggagagagagagagagagagagagagagagagagagagagagagag
agaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6364094_6365226
seq2: B6Ng01-140P19.b_50_1180 (reverse)

seq1  TCATTCA-----TTCATTCATTCATTCATTCATTC--TGTTGTAATCTCC  43
      |||||||      ||||||||||  ||| ||||||   |||||| |||||
seq2  TCATTCAATCCCATCATTCATTCCATCA-TCATTCATCGTTGTATTCTCC  49

seq1  CCATTCACTGGGATAGGCAGTATGGGAACCTGCTTGGTTCTGAGCACTAA  93
      ||| ||||||||||| |||||||  ||| |||| || |||||||||| ||
seq2  CCA-TCACTGGGATA-GCAGTAT-TGAAACTGCCTGATTCTGAGCAC-AA  95

seq1  TATGGCAGCCATTATTGAGTTGTGTTTC-TATACACTCAGAACTGTTTCT  142
      ||| ||||||  || |||| |||||||| | ||||||||||||||||   
seq2  TAT-GCAGCCCATA-TGAG-TGTGTTTCTTTTACACTCAGAACTGTTCTC  142

seq1  CATGCTTTGCTAATAGAGAGGCAGTCAGCAGGGAATCAATTTTGGCTGCC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTGCTAATAGAGAGGCAGTCAGCAGGGAATCAATTTTGGCTGCC  192

seq1  CACTCAAATGTATCCTCTTAGGGGCAGCAAACATTCAAAATTGCTCCTGT  242
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  CACTCAAATGTATCCTCTTAGGGGCAGCAAACAT--CAAATTGCTCCTGT  240

seq1  CCCACCTTGCTCTTTGCAGAGATGAGGCTCCCATAATCAAAGCAAGGTCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTGCTCTTTGCAGAGATGAGGCTCCCATAATCAAAGCAAGGTCC  290

seq1  TTTAAGCTCAGGCACCTGTGCTTTTGGGGAGCAAAACAAAACACTGCATT  342
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTCAGGCACCTGTGCTTTTGGGGAGCAAAACAAAACACTGCATT  340

seq1  GGGTGTAGTATCTAACAACTGCTCTGCAAGATGCCATGTGTTGACTGGCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGTATCTAACAACTGCTCTGCAAGATGCCATGTGTTGACTGGCT  390

seq1  CATTTGAACCTCCCAGGTGGCTTATGTGACAGGGTAGAAGTCATTCTTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAACCTCCCAGGTGGCTTATGTGACAGGGTAGAAGTCATTCTTTT  440

seq1  CTTATAAACGAGGTTGTTGTATTTCATAAGATAATGACCAAGATTATACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAACGAGGTTGTTGTATTTCATAAGATAATGACCAAGATTATACA  490

seq1  GTTACTATTAAGGGCTCTGGGATTTGACTACAGTTGCCACCAGCATGGTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATTAAGGGCTCTGGGATTTGACTACAGTTGCCACCAGCATGGTT  540

seq1  ATGCTCTGGGGACATAGCAGAGGTGAGAAGACACAGTATCAGCCTCAGCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGGGGACATAGCAGAGGTGAGAAGACACAGTATCAGCCTCAGCA  590

seq1  GTTATTCGAGAGGCAGAGATGGAGAAGGGGAGGGACTGCAGGGAGTTTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCGAGAGGCAGAGATGGAGAAGGGGAGGGACTGCAGGGAGTTTGG  640

seq1  GTACTCCTTCAGTTCTTAACTGGCTTACCGCTCTGTGACTAAAGTTAGTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTTCAGTTCTTAACTGGCTTACCGCTCTGTGACTAAAGTTAGTA  690

seq1  GTTGGTAGCTTCATGAACTATACAGGAAGGCTGTTAGAAAAATGAAGAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGCTTCATGAACTATACAGGAAGGCTGTTAGAAAAATGAAGAAA  740

seq1  ATAAAATGAATGTGTTTTTAATTTACATAATTAAATCCCAATGTGGACCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGAATGTGTTTTTAATTTACATAATTAAATCCCAATGTGGACCA  790

seq1  CTGGTTCATGTTTGATGGTCAGAAAACAACTTGTAAGAGTTGTTTCTCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCATGTTTGATGGTCAGAAAACAACTTGTAAGAGTTGTTTCTCTC  840

seq1  CTTCCATCATGTGTTCTTGGGGACTGAACTCAGGTTTGGTAAGCCTTGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCATGTGTTCTTGGGGACTGAACTCAGGTTTGGTAAGCCTTGGT  890

seq1  GGAAAGTCCCTTTACCTACTGAGTCAGCACTCCAAAGTTCTTAAAAAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCCCTTTACCTACTGAGTCAGCACTCCAAAGTTCTTAAAAAGGA  940

seq1  CTGCTAAAGAGAAAAGACATGGATATTAACTTCAAAGTTCTCTTCCCTAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAAGAGAAAAGACATGGATATTAACTTCAAAGTTCTCTTCCCTAT  990

seq1  CTGGATACAAGATGATTTTCTGCTGACAATTGTGAGAAAGTGCCTGAAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATACAAGATGATTTTCTGCTGACAATTGTGAGAAAGTGCCTGAAAG  1040

seq1  CAGCCACTTGCTTTCCCACGTCCTCAGTAAATGCATGACTAACATGTGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTTGCTTTCCCACGTCCTCAGTAAATGCATGACTAACATGTGCA  1090

seq1  ACGAGAACATGACTTGTTGCCCTGTCAAAGGGTAAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAACATGACTTGTTGCCCTGTCAAAGGGTAAGAATTC  1131


seq1: chr16_6237557_6238067
seq2: B6Ng01-140P19.g_66_576

seq1  GAATTCTCAGCAGTGAACCTAGAACTTCCTTAAACTTTCACAGAACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGTGAACCTAGAACTTCCTTAAACTTTCACAGAACTCAG  50

seq1  TGAACTTGATTAACACTGAAAACATCTTGAACCTCCTTGTAACTCAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGATTAACACTGAAAACATCTTGAACCTCCTTGTAACTCAGGAC  100

seq1  ACTAAGCAAGGATTTATTTGCATAATAAAGCACTGACTAAACCCCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCAAGGATTTATTTGCATAATAAAGCACTGACTAAACCCCTCAGA  150

seq1  TCAATACAAGCACTGAGGCCACCATCCATAATGACACAAGGTAAAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACAAGCACTGAGGCCACCATCCATAATGACACAAGGTAAAGGGGA  200

seq1  CACAGATATGTAGCCATAGTTTTTAAGACCTGTGCCCTCCTGGGCAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATGTAGCCATAGTTTTTAAGACCTGTGCCCTCCTGGGCAGTGA  250

seq1  AGGTTTTAGTTTCCAATCTTAGTTCTTGTTCTCATCTGTTTGGGATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTAGTTTCCAATCTTAGTTCTTGTTCTCATCTGTTTGGGATGAGA  300

seq1  ACAACTTGTTGAAAATAGTGTCGAGCCAGGCGTGGTGGTACACGCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTGTTGAAAATAGTGTCGAGCCAGGCGTGGTGGTACACGCCTTTA  350

seq1  ATCCCAGTATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGTCA  400

seq1  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  450

seq1  CCTGTATCGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  500

seq1  AGAGAGAGAGA  511
      |||||||||||
seq2  AGAGAGAGAGA  511


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