BAC Information

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BAC

Clone NameB6Ng01-141E01
Chromosome16 (Build37)
Map Location 48,127,843 - 48,277,897
singlet/doubletdoublet
Overlap geneEG637273
Upstream geneLOC628776, EG667741, EG639644
Downstream geneDppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E01.bB6Ng01-141E01.g
ACCDH939756DH939757
length3601,099
definitionDH939756|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E01, 5' end.DH939757|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,127,843 - 48,128,202)(48,276,789 - 48,277,897)
sequence
ctgacttaggagaccttctaattccccccctcaagctcccccagtggtca
acccacaggggtgcaaacgcgtcacaagtttagcagatttcacttattat
gcatggacccttcctaatactactacatacctttccaccccggaacatac
ttattcccaacatggtccatacctgagagtatcccctcccccattctatg
catatggaactgaaatcagcggaatgcaagaacatgtataaaacataact
gatgtgaaataaagttcaagcagaaattatttgtctaactctagaaaatt
gcatggagagaggagctaacagaaagaagtaggaagggagggaggaagga
gagggtgagg
gaattctacctttgctgttgggcatactggcacattccttttatcccagt
gcttgagagcagaagcagtcagctctgtgtaagactgaggccagcctggt
ctacatagtgagttccaggacggtaaaagctactcagtgagacttattta
aaaaaaaaatgctcaaacagaccccaaaatcaccaccacaacaaaacaag
catcaacagcaaccgaattctacagaggcccaagactgataccttctttt
ggtccctgtgactccagtttctggaaggacctaagtcctgtaagttgtcc
tgctgccacatttgtggtctaaaaaacagtaagtaaatacatgtggttga
aaaaaaaaatcctgctttttattatgtcctatagaagaaatccattgctc
atttacttctaaattttaaattcttttaaagcatctatttgtttgtttat
ttgttttggtgtgtgtgtgcacaccacagcacatgtgtggaggtctggga
acaacttttgggagtcacttctctccttccaccaggtaggtcccagggat
tgcactcaggtcatcaaggctggccacccagtagcaggggttgagcgcaa
gccacctgctttcaggcaggcctccacttgactacatccctagccctttt
tctacttgctgttatctgagatagggtctggttaaactgccccgcctggc
ttgagccgcagccctaggaggtcttaagctttttactttcctttcaaagt
tctgtgctaccgggttccccttaaataaatgcagaattgccagatctctg
acaggacctcctgctatgcagtaatatcaaggacctgaaattaagctgca
tctaccatgggaggtatctgtccccagtagaatgtatttcttgtatgtgt
gcatgtttagacttatttatttattatatgtaaggatactgtactatctt
tagacactctcagaggagggcatcagatttccattatgaatgtggagcca
tcatgagggtgctgggattgacgcaggacctttgatagagacagtagctt
cctaactgccgagccgtctctcgacctcgaatctctgtgtttcactggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48127843_48128202
seq2: B6Ng01-141E01.b_53_412

seq1  CTGACTTAGGAGACCTTCTAATTCCCCCCCTCAAGCTCCCCCAGTGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAGGAGACCTTCTAATTCCCCCCCTCAAGCTCCCCCAGTGGTCA  50

seq1  ACCCACAGGGGTGCAAACGCGTCACAAGTTTAGCAGATTTCACTTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGGGGTGCAAACGCGTCACAAGTTTAGCAGATTTCACTTATTAT  100

seq1  GCATGGACCCTTCCTAATACTACTACATACCTTTCCACCCCGGAACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGACCCTTCCTAATACTACTACATACCTTTCCACCCCGGAACATAC  150

seq1  TTATTCCCAACATGGTCCATACCTGAGAGTATCCCCTCCCCCATTCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCAACATGGTCCATACCTGAGAGTATCCCCTCCCCCATTCTATG  200

seq1  CATATGGAACTGAAATCAGCGGAATGCAAGAACATGTATAAAACATAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGAACTGAAATCAGCGGAATGCAAGAACATGTATAAAACATAACT  250

seq1  GATGTGAAATAAAGTTCAAGCAGAAATTATTTGTCTAACTCTAGAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAAATAAAGTTCAAGCAGAAATTATTTGTCTAACTCTAGAAAATT  300

seq1  GCATGGAGAGAGGAGCTAACAGAAAGAAGTAGGAAGGGAGGGAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGAGAGGAGCTAACAGAAAGAAGTAGGAAGGGAGGGAGGAAGGA  350

seq1  GAGGGTGAGG  360
      ||||||||||
seq2  GAGGGTGAGG  360

seq1: chr16_48276789_48277897
seq2: B6Ng01-141E01.g_67_1165 (reverse)

seq1  ACCAGATGAAACACAGAAATACGGGGCTGGAGAGACGGCTCAGCAGTTAA  50
      ||||| ||||||||||| || || || | |||||||||||| ||||||| 
seq2  ACCAG-TGAAACACAGAGATTCGAGG-TCGAGAGACGGCTCGGCAGTTAG  48

seq1  GAGAACTAACTG-CTCTTCCAAAGGTCCTGCGTTCAAATCCCAGCACCCT  99
      || | || |||| ||||  ||||||||||||||   ||||||||||||||
seq2  GA-AGCT-ACTGTCTCTATCAAAGGTCCTGCGT--CAATCCCAGCACCCT  94

seq1  CATGGTGGCTCACAATTCCATAAT-GAAATCTGATGCCCTCTTCTGAG-G  147
      |||| |||||| ||  | |||||| |||||||||||||||| |||||| |
seq2  CATGATGGCTC-CACATTCATAATGGAAATCTGATGCCCTCCTCTGAGAG  143

seq1  TGTCTAAAGATAGGTACAGTATACTTACATATAATAAATAAATAAGTCTT  197
      |||||||||||| ||||||||| |||||||||||||||||||||||||| 
seq2  TGTCTAAAGATA-GTACAGTATCCTTACATATAATAAATAAATAAGTCT-  191

seq1  AAAACATGCACACATACAGAGAAATACATTCTAACTGGGGACAGATACCT  247
       ||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  -AAACATGCACACATACA-AGAAATACATTCT-ACTGGGGACAGATACCT  238

seq1  CCCATGGTAGATGCAGCTTAATTTCAGGTCCTTGATATTACTGCATTAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCATGGTAGATGCAGCTTAATTTCAGGTCCTTGATATTACTGCA-TAGC  287

seq1  AGGAGGTCCTGTCAGAGATCTGGCAATTCTGCATTTATTTAAGGGGAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCCTGTCAGAGATCTGGCAATTCTGCATTTATTTAAGGGGAACC  337

seq1  CGGTAGCACAGAACTTTGAAAGGAAAGTAAAAAGCTTAAGACCTCCTAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCACAGAACTTTGAAAGGAAAGTAAAAAGCTTAAGACCTCCTAGG  387

seq1  GCTGCGGCTCAAGCCAGGCGGGGCAGTTTAACCAGACCCTATCTCAGATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGCTCAAGCCAGGCGGGGCAGTTTAACCAGACCCTATCTCAGATA  437

seq1  ACAGCAAGTAGAAAAAGGGCTAGGGATGTAGTCAAGTGGAGGCCTGCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGTAGAAAAAGGGCTAGGGATGTAGTCAAGTGGAGGCCTGCCTG  487

seq1  AAAGCAGGTGGCTTGCGCTCAACCCCTGCTACTGGGTGGCCAGCCTTGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGTGGCTTGCGCTCAACCCCTGCTACTGGGTGGCCAGCCTTGAT  537

seq1  GACCTGAGTGCAATCCCTGGGACCTACCTGGTGGAAGGAGAGAAGTGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAGTGCAATCCCTGGGACCTACCTGGTGGAAGGAGAGAAGTGACT  587

seq1  CCCAAAAGTTGTTCCCAGACCTCCACACATGTGCTGTGGTGTGCACACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGTTGTTCCCAGACCTCCACACATGTGCTGTGGTGTGCACACAC  637

seq1  ACACCAAAACAAATAAACAAACAAATAGATGCTTTAAAAGAATTTAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAACAAATAAACAAACAAATAGATGCTTTAAAAGAATTTAAAAT  687

seq1  TTAGAAGTAAATGAGCAATGGATTTCTTCTATAGGACATAATAAAAAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTAAATGAGCAATGGATTTCTTCTATAGGACATAATAAAAAGCA  737

seq1  GGATTTTTTTTTTCAACCACATGTATTTACTTACTGTTTTTTAGACCACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTTTTTCAACCACATGTATTTACTTACTGTTTTTTAGACCACA  787

seq1  AATGTGGCAGCAGGACAACTTACAGGACTTAGGTCCTTCCAGAAACTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCAGCAGGACAACTTACAGGACTTAGGTCCTTCCAGAAACTGGA  837

seq1  GTCACAGGGACCAAAAGAAGGTATCAGTCTTGGGCCTCTGTAGAATTCGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGGACCAAAAGAAGGTATCAGTCTTGGGCCTCTGTAGAATTCGG  887

seq1  TTGCTGTTGATGCTTGTTTTGTTGTGGTGGTGATTTTGGGGTCTGTTTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGATGCTTGTTTTGTTGTGGTGGTGATTTTGGGGTCTGTTTGA  937

seq1  GCATTTTTTTTTTAAATAAGTCTCACTGAGTAGCTTTTACCGTCCTGGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTTTTTTAAATAAGTCTCACTGAGTAGCTTTTACCGTCCTGGAA  987

seq1  CTCACTATGTAGACCAGGCTGGCCTCAGTCTTACACAGAGCTGACTGCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGTAGACCAGGCTGGCCTCAGTCTTACACAGAGCTGACTGCTT  1037

seq1  CTGCTCTCAAGCACTGGGATAAAAGGAATGTGCCAGTATGCCCAACAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCAAGCACTGGGATAAAAGGAATGTGCCAGTATGCCCAACAGCA  1087

seq1  AAGGTAGAATTC  1109
      ||||||||||||
seq2  AAGGTAGAATTC  1099