BAC Information

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BAC

Clone NameB6Ng01-141E08
Chromosome3 (Build37)16 (Build37)
Map Location 41,059,177 - 41,059,73760,033,881 - 60,034,801
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E08.bB6Ng01-141E08.g
ACCDH939770DH939771
length9631,031
definitionDH939770|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E08, 5' end.DH939771|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,177 - 41,059,737)(60,033,881 - 60,034,801)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagttcaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagattctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatgtcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttagccttagtataaggagatagaaatggatcaatttgc
attcttctacatgataactgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tccacttgtctgtagctatctttcttatatagccctggaccacctgcaca
gggaatggtgtcatccacagtagaccataccatcctttcttccttaacaa
tcaaaatatttccccatacacatgctcaaagaataaggtgatctctacag
ttctttaactaggtgttcctcaagggtggctctaggctatgtcaagttga
aaaagaagtttcccttctttctctgggttagatgttggctttcttcccag
tgcttatctgccttttcagtatattcttattctctcccatagtttcagct
gtcatctgtaggtagatgtgttgataattttgcatattcctgctcttgtg
acacaaaaggcaaagtcttttagcctgagattaagaatctgatcacatgt
tcacctctgtccc
gaattcatcttgtgctgataaccatcttactaatgtcaatttacaaattc
aaaattctataaatttaataaaatattcaacaacattctttgcagaaata
gaaaaaaaaatcctctaaaattcaaatggaaccacaaaagaccccagata
gccgaagaaacaaaagaaacaaacaaacctaccccacataaaacaagcaa
tgctggaggctatatctaattgtaagatataaagctaaagtaataataat
gttactagcacagaaatgaacatgtagatgaagggaacgagatagaaaac
ccagacatgagtgcacacagctattgctgaccatttgacatttaataaat
atgataaaaacatacactgaaaatatagtcatgttcaataaatagtactg
ggaagactggatttcatcctggaggagaatgaaatttgatttgtacttat
cacgctgaagaaaaactaactctaagtggatgaaagacctaaatgtgagc
cctgaaacactgacacagttaaagataacaggcaggatcctacagaatct
aggtctaggaaactgcttactgattagggatctatttgcttaaaaattac
agccaacaattaaagctaaaaaggttctgacaataaaaaaatacattttg
ttcttttgtgttctattttaattatgctttatatttgaattaagtcaata
tatgcatatatatgtaatatcttcatattctgataggtcttctggcatct
gatgagtttctctttgttgggccacttctcttgcagaaagtagagagtag
agcaacatgtataggacaggggatgtggggtggaagcatgcccaaactat
tatttataaggaaccttctttaggggcaaccacttcagagagcacagcat
ctatctctgcacaaattcagagccctcagagctagtcatttcttaaagct
ccccttctacatgcgacattcaagataagattcatcatttatttcagaaa
actgtaagctgtgacactttccttctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059177_41059737
seq2: B6Ng01-141E08.b_48_609 (reverse)

seq1  ACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCA  50
      |||||||||  ||||||||||| |||||||||||| |||| | ||| |||
seq2  ACAGACAAGTGGACCAATGGAACAGAATTGAAGACCCAGAGATGAACCCA  50

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTG  100

seq1  GAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTAT  150
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  GAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCAGTTAT  150

seq1  CATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTC  200
      ||||||||||||||| |||||||||| | |||||||||| ||||||||  
seq2  CATGTAGAAGAATGCAAATTGATCCATTTCTATCTCCTTATACTAAGGCT  200

seq1  AAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACT  250
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACT  250

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAA  300
      ||||||||||||||| ||||||||||| ||||| ||||  ||||||||||
seq2  TATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGACATGGGTACAGGGGAAA  300

seq1  AATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGAC  350
      |||||||| ||||||||||||||||||||||||||||||  ||||| || 
seq2  AATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGAT  350

seq1  AAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGT  400
      |||||||||||||| ||| |||||||||||||||| ||||||||||||||
seq2  AAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGT  400

seq1  CAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATC  449
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  CAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGAATCTTTACCTATC  450

seq1  CTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAG  499
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAG  500

seq1  GTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCT  549
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCT  550

seq1  AAACAAAGAATT  561
       |||||||||||
seq2  GAACAAAGAATT  562

seq1: chr16_60033881_60034801
seq2: B6Ng01-141E08.g_186_1099

seq1  AAATTCAAATGGAACCACAAAAGACCCCAGATAGCCGAAGAAACAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAATGGAACCACAAAAGACCCCAGATAGCCGAAGAAACAAAAGA  50

seq1  AACAAACAAACCTACCCCACATAAAACAAGCAATGCTGGAGGCTATATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACCTACCCCACATAAAACAAGCAATGCTGGAGGCTATATCT  100

seq1  AATTGTAAGATATAAAGCTAAAGTAATAATAATGTTACTAGCACAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAGATATAAAGCTAAAGTAATAATAATGTTACTAGCACAGAAAT  150

seq1  GAACATGTAGATGAAGGGAACGAGATAGAAAACCCAGACATGAGTGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTAGATGAAGGGAACGAGATAGAAAACCCAGACATGAGTGCACA  200

seq1  CAGCTATTGCTGACCATTTGACATTTAATAAATATGATAAAAACATACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTGCTGACCATTTGACATTTAATAAATATGATAAAAACATACAC  250

seq1  TGAAAATATAGTCATGTTCAATAAATAGTACTGGGAAGACTGGATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATAGTCATGTTCAATAAATAGTACTGGGAAGACTGGATTTCAT  300

seq1  CCTGGAGGAGAATGAAATTTGATTTGTACTTATCACGCTGAAGAAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGAGAATGAAATTTGATTTGTACTTATCACGCTGAAGAAAAACT  350

seq1  AACTCTAAGTGGATGAAAGACCTAAATGTGAGCCCTGAAACACTGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAGTGGATGAAAGACCTAAATGTGAGCCCTGAAACACTGACACA  400

seq1  GTTAAAGATAACAGGCAGGATCCTACAGAATCTAGGTCTAGGAAACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGATAACAGGCAGGATCCTACAGAATCTAGGTCTAGGAAACTGCT  450

seq1  TACTGATTAGGGATCTATTTGCTTAAAAATTACAGCCAACAATTAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTAGGGATCTATTTGCTTAAAAATTACAGCCAACAATTAAAGCT  500

seq1  AAAAAGGTTCTGACAATAAAAAAATACATTTTGTTCTTTTGTGTTCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTTCTGACAATAAAAAAATACATTTTGTTCTTTTGTGTTCTATT  550

seq1  TTAATTATGCTTTATATTTGAATTAAGTCAATATATGCATATATATGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATGCTTTATATTTGAATTAAGTCAATATATGCATATATATGTAA  600

seq1  TATCTTCATATTCTGATAGGTCTTCTGGCATCTGATGAGTTTCTCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCATATTCTGATAGGTCTTCTGGCATCTGATGAGTTTCTCTTTGT  650

seq1  TGGGCCACTTCTCTTGCAGAAAGTAGAGAGTAGAGCAACATGTATAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACTTCTCTTGCAGAAAGTAGAGAGTAGAGCAACATGTATAGGAC  700

seq1  AGGGGATGTGGGGTGGAAGCAGGCCCAAACTATTATTTATAAGGAACCTT  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGGATGTGGGGTGGAAGCATGCCCAAACTATTATTTATAAGGAACCTT  750

seq1  CTTTAGGGGCAACCACTTCAGAGAGCACAGCATCTATCTCTGCACAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGGCAACCACTTCAGAGAGCACAGCATCTATCTCTGCACAAATT  800

seq1  CAGAGCCCTCAGAACCTAGTCATTTCTTAAAGCTCCCACTTCTACATGCG  850
      |||||||||||| | |||||||||||||||||||||| ||||||||||||
seq2  CAGAGCCCTCAG-AGCTAGTCATTTCTTAAAGCTCCC-CTTCTACATGCG  848

seq1  ACATTCAAGATTAAGACTTCATCATTAATTTCAGAAAAACTGTTAAAGCT  900
      |||||||||| ||||| ||||||||| ||||||| ||||||||  |||||
seq2  ACATTCAAGA-TAAGA-TTCATCATTTATTTCAG-AAAACTGT--AAGCT  893

seq1  GTGACACTTTCCTTCTGTTTT  921
      |||||||||||||||||||||
seq2  GTGACACTTTCCTTCTGTTTT  914