BAC Information

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BAC

Clone NameB6Ng01-142D02
Chromosome16 (Build37)
Map Location 81,958,836 - 82,139,084
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142D02.bB6Ng01-142D02.g
ACCDH940452DH940453
length8461,142
definitionDH940452|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D02, 5' end.DH940453|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,958,836 - 81,959,423)(82,137,915 - 82,139,084)
sequence
gaattctcaaaagaggaattcaatggctgagaagagcataaacagtcaat
gttctttgtcattggtgatatgcaaataaaatggttctgatatttcacct
aacacccatcagaggggctaacatcaaaaagtaaggaacagcaaacactg
gctgggatatgatggaagggaaacccttcatccatttttttgtgggacat
cacacttgtacaaacacaggaaatcagtttggcagtctcagaaaatttgg
aatagttctacctcaaaatcctgatatactactcctctgcatgtacccca
aaattatgtagcatcatcccacaaggggatctgctccaatatgttcctag
cagcattattcataatagccagaaacttgaaataacctagatgtccctca
actgaagaatggataaatgtgttccatttatataatggaaaacttatgat
ctattaaaaataaagatatcatatatttgcatggaactagaaaatctcat
catgaatgagataccctataccccaaagtacataaaacatggtatgtatt
cacttataagtggatattagccacaaagtacaggttagctaagctataat
caacagaactaaagaggcaagataacaaggaggaccaaagggaggaaatg
aaatagatattataactagatggagggaggaaattggatgggagagggaa
tgaatacaggagcctagaggtgtgggagacagatgtgaggggaacaggag
agagtgaacaaaacaatgtttcagattatttaaaagactatcttagtaat
tgaatgatctctctctctctctctctctctctctctctctgtgtct
gaattcatttggttcttgtagaattgataatcatgttttcttttttggtg
gattcatttttaatctgttcttcagtgctaaatgtttcccacttgtttgg
ggtgtccttgttataactccagaaggatattttgcttacatcctttcctg
attcatatatgacactgcttatttgttttgtggcccagatacagtgatct
cagtcaagttatcatagctttgactgcaataagaaaacctcccttatcat
gtcacatttgatatgtcagtatatttccaggtcgcattgactaaagagtg
gaggagttaattcttaggatgtgtgcttttatgtagcaatttcagaatca
tctaaactatgtacctgcataaatattaacagaaaattataagaatgata
atgtatttaaaaacaccaaagtacatataaatagaatcaaaatctagaaa
ctctacagaaaaataaatatgttctctttgctgaatcctaaggatttaat
tattatttaggattattgagacaacccaaagtttatggatctctttatac
agtttaacaattgaatgaatatacaatgggtagtttttattgataaatat
ttgctataaaaattcagaaggaacattaaagagttacccttttggaaatt
ttaatcgacgagtgtacctaggcaaatactatgaatcatctttagcctag
cagataaagtattactttattaattgtcaatgaatagggtggaaacatcc
agcgcacagatccacactaatgtatttaaagtcaggatgaccagagactg
cctgccgcctgtataatggaataggaagtttaaaatctttttacacacgc
atctccccaataactagatctgattataacatgacctcggggacagaaat
ctgttttgcagagcaagacacagaagcaggaaagttgcctggtacatttc
acaatgtgcctgaaagaatgtaggctctatacataggcagtttcagtgca
gcgacaaaccacagtacaccatcatcatctatcttgaggaaacgaccctc
tagtaagatacaatggaggacatcataatttggctcaaacaggtgaatgc
agattcattaacaatacctgatagtcctgaatctgagttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81958836_81959423
seq2: B6Ng01-142D02.b_303_890

seq1  TACCTCAAAATCCTGATATACTACTCCTCTGCATGTACCCCAAAATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAAATCCTGATATACTACTCCTCTGCATGTACCCCAAAATTATG  50

seq1  TAGCATCATCCCACAAGGGGATCTGCTCCAATATGTTCCTAGCAGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCATCCCACAAGGGGATCTGCTCCAATATGTTCCTAGCAGCATTA  100

seq1  TTCATAATAGCCAGAAACTTGAAATAACCTAGATGTCCCTCAACTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATAGCCAGAAACTTGAAATAACCTAGATGTCCCTCAACTGAAGA  150

seq1  ATGGATAAATGTGTTCCATTTATATAATGGAAAACTTATGATCTATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAAATGTGTTCCATTTATATAATGGAAAACTTATGATCTATTAAA  200

seq1  AATAAAGATATCATATATTTGCATGGAACTAGAAAATCTCATCATGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGATATCATATATTTGCATGGAACTAGAAAATCTCATCATGAATG  250

seq1  AGATACCCTATACCCCAAAGTACATAAAACATGGTATGTATTCACTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCTATACCCCAAAGTACATAAAACATGGTATGTATTCACTTATA  300

seq1  AGTGGATATTAGCCACAAAGTACAGGTTAGCTAAGCTATAATCAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATATTAGCCACAAAGTACAGGTTAGCTAAGCTATAATCAACAGAA  350

seq1  CTAAAGAGGCAAGATAACAAGGAGGACCAAAGGGAGGAAATGAAATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGGCAAGATAACAAGGAGGACCAAAGGGAGGAAATGAAATAGAT  400

seq1  ATTATAACTAGATGGAGGGAGGAAATTGGATGGGAGAGGGAATGAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACTAGATGGAGGGAGGAAATTGGATGGGAGAGGGAATGAATACA  450

seq1  GGAGCCTAGAGGTGTGGGAGACAGATGTGAGGGGAACAGGAGAGAGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAGAGGTGTGGGAGACAGATGTGAGGGGAACAGGAGAGAGTGAA  500

seq1  CAAAACAATGTTTCAGATTATTTAAAAGACTATCTTAGTAATTGAATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAATGTTTCAGATTATTTAAAAGACTATCTTAGTAATTGAATGAT  550

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCT  588
      |||||||||||||||||||||||||||||||||| |||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTCT  588

seq1: chr16_82137915_82139084
seq2: B6Ng01-142D02.g_68_1209 (reverse)

seq1  ATTAACTCAGATTCAGGACTTATCAGTATATTGTTAATATGATATTTTCC  50
      ||||||||||||||||||| ||||||  ||||||||||     | | | |
seq2  ATTAACTCAGATTCAGGAC-TATCAG-GTATTGTTAAT----GAATCTGC  44

seq1  CATCTACTGTTTTTGAAGCAAATTTATGATGTTCCCTCATTTGTATCTTT  100
        ||  ||||||    ||| || |||||||||  ||||  ||||||| ||
seq2  ATTCACCTGTTT---GAGCCAAATTATGATGT--CCTCCATTGTATC-TT  88

seq1  ACTAGAGTGTCGTTTTTCCTCAAGATAGATGATGATGGTGTACCTGTTGG  150
      ||||||| ||||  |||||||||||||||||||||||||||| ||| |||
seq2  ACTAGAGGGTCG--TTTCCTCAAGATAGATGATGATGGTGTA-CTG-TGG  134

seq1  TTTTGGTCGCTGCACTTGAAACTGCCCTATGTTATAAGAGCCTACATTTC  200
      |||  |||||||||| |||||||| |||||| ||| ||||||||||||  
seq2  TTT--GTCGCTGCAC-TGAAACTG-CCTATG-TAT-AGAGCCTACATT--  176

seq1  TTTTCAGGCCACATTGTGAAATGTACCAGGCACCTTTCCTGCTTCTGTGT  250
       ||||||| ||||||||||||||||||||||| |||||||||||||||| 
seq2  CTTTCAGG-CACATTGTGAAATGTACCAGGCAACTTTCCTGCTTCTGTG-  224

seq1  TCTTGCTTCTGCAAAACAGATTTCTGTCCCCGAGGTCATGTTATAATCAG  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGC-TCTGCAAAACAGATTTCTGTCCCCGAGGTCATGTTATAATCAG  273

seq1  ATCTAGTTATTGGGGAGATGCGTGTGTAAAAAGATTTTTAAACTTCCTAT  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCTAGTTATTGGGGAGATGCGTGTGTAAAAAGA-TTTTAAACTTCCTAT  322

seq1  TCCATTATACAGGCGGCAGGCAGTCTCTGGTCATCCTGACTTTAAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATACAGGCGGCAGGCAGTCTCTGGTCATCCTGACTTTAAATACA  372

seq1  TTAGTGTGGATCTGTGCGCTGGATGTTTCCACCCTATTCATTGACAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGGATCTGTGCGCTGGATGTTTCCACCCTATTCATTGACAATTA  422

seq1  ATAAAGTAATACTTTATCTGCTAGGCTAAAGATGATTCATAGTATTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAATACTTTATCTGCTAGGCTAAAGATGATTCATAGTATTTGCC  472

seq1  TAGGTACACTCGTCGATTAAAATTTCCAAAAGGGTAACTCTTTAATGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACACTCGTCGATTAAAATTTCCAAAAGGGTAACTCTTTAATGTTC  522

seq1  CTTCTGAATTTTTATAGCAAATATTTATCAATAAAAACTACCCATTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAATTTTTATAGCAAATATTTATCAATAAAAACTACCCATTGTAT  572

seq1  ATTCATTCAATTGTTAAACTGTATAAAGAGATCCATAAACTTTGGGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCAATTGTTAAACTGTATAAAGAGATCCATAAACTTTGGGTTGT  622

seq1  CTCAATAATCCTAAATAATAATTAAATCCTTAGGATTCAGCAAAGAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAATCCTAAATAATAATTAAATCCTTAGGATTCAGCAAAGAGAAC  672

seq1  ATATTTATTTTTCTGTAGAGTTTCTAGATTTTGATTCTATTTATATGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTTTCTGTAGAGTTTCTAGATTTTGATTCTATTTATATGTAC  722

seq1  TTTGGTGTTTTTAAATACATTATCATTCTTATAATTTTCTGTTAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTTTTAAATACATTATCATTCTTATAATTTTCTGTTAATATTT  772

seq1  ATGCAGGTACATAGTTTAGATGATTCTGAAATTGCTACATAAAAGCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTACATAGTTTAGATGATTCTGAAATTGCTACATAAAAGCACAC  822

seq1  ATCCTAAGAATTAACTCCTCCACTCTTTAGTCAATGCGACCTGGAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGAATTAACTCCTCCACTCTTTAGTCAATGCGACCTGGAAATAT  872

seq1  ACTGACATATCAAATGTGACATGATAAGGGAGGTTTTCTTATTGCAGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATATCAAATGTGACATGATAAGGGAGGTTTTCTTATTGCAGTCA  922

seq1  AAGCTATGATAACTTGACTGAGATCACTGTATCTGGGCCACAAAACAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGATAACTTGACTGAGATCACTGTATCTGGGCCACAAAACAAAT  972

seq1  AAGCAGTGTCATATATGAATCAGGAAAGGATGTAAGCAAAATATCCTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGTCATATATGAATCAGGAAAGGATGTAAGCAAAATATCCTTCT  1022

seq1  GGAGTTATAACAAGGACACCCCAAACAAGTGGGAAACATTTAGCACTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATAACAAGGACACCCCAAACAAGTGGGAAACATTTAGCACTGAA  1072

seq1  GAACAGATTAAAAATGAATCCACCAAAAAAGAAAACATGATTATCAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGATTAAAAATGAATCCACCAAAAAAGAAAACATGATTATCAATTC  1122

seq1  TACAAGAACCAAATGAATTC  1170
      ||||||||||||||||||||
seq2  TACAAGAACCAAATGAATTC  1142