BAC Information

Click to search

BAC

Clone NameB6Ng01-142E08
Chromosome16 (Build37)
Map Location 70,701,145 - 70,838,250
singlet/doubletdoublet
Overlap genenone
Upstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
Downstream geneLOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E08.bB6Ng01-142E08.g
ACCDH940508DH940509
length9351,083
definitionDH940508|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E08, 5' end.DH940509|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,701,145 - 70,702,080)(70,837,143 - 70,838,250)
sequence
gaattctttgagattaataattctcagattagtcccttgtcagtggcttt
gaactatacctcttaaaaacatctcaccagttttatagcctagcaatatt
ttgttcaagatctggaaaccaacattttaaatacagtcttaaagaaaaaa
ggacttcaccatctcagtttctctggtgtagtaggagtctagtttaggca
ggatacaaggtcctaaagtgaaaaggctatttcctgttgtgatgcattca
ctaatctcatgggtaaagataattaaatacatatggccggcctgtaaagc
tctcatctagctaatctttctcccgtcaagtttccttaagaaatattata
ttaatttttcttacattcaatgtattctgttaattattcttctatataaa
aatattcaaccaagaatcttcaaacacaatactctattttgggctttggc
tcattggaaatagtaaaattcagctataatatcccttagaataaggaagg
aaaggggggggatctgaggatattctgttgactcagactatgtcacctaa
ccagtgttcctgggctttatggaattggtgattactctgggatactgttc
atttatattcacccattgtggatgtaacaggaaaataaatccatgattaa
aacctcacagggatgggttccttagcaaagaaatacattgtcagccacta
gtaggaagtaaatagcactaaggagatattgaggaatggatgtgtacaga
aggcagggaactatgaaaatctcacatggtataaaagtctaagaagtaga
gtgaggaagggtgtgattttaaagagaaactttactgagtatagtgactg
tttctgagtatcaagaaacttaaagagatttagaatatccctcatgctag
aaccatgccaatgtgtgtgtgtggagggggtggga
gaattccatgactgattagtgaacaccagctaacacactgctaggaaaac
aactacttattttttccctacacagtcacttaggtgggatgtaaaagttg
caaaaattcatcaaatttgaacattctacttgagttcaatttctctggtg
gcccacaagtcccatcttgaagtctgatagtatttctactccacaattta
acttccaattaccacactgtgatgtcaagtgaaatactttataaaaccaa
tttcaaatcaggcttacctttttttttatacttatctttcaaaaaaaaaa
aaaaaacctaatatatgttccctttcaaaacattttcttccagaattttt
aagtgctactgaaagagtcaatcagccacactatggtgggcaaccatgtt
tcaggtcaaaagtgtaattgttaaaatggattttcctaacctagacttgt
taaaggattaatcattttcaaaaagcatatatgctttaaaactttgccca
actaaataacgcattaatctttctcacctgtgtggggaaagcgttgtaaa
ccaacttttctcaagttagaatttgtcaaatttccagaagtaagcccata
ttacagaaagaacatctatagccctgtttcccagctctgtttctgcttac
tatttttcctgcataaactgaaggcaactttaagctggctccttcagaat
tggaaacttcacccactcttcagtgtgttccgtgcacagggctttctggc
attttctgataatattgtgattcatttcctcagctcacagaacagatatc
gagacatgatcgtcaagactttgaactgtgatttaaggagagcacacatt
attagacaagcacaggcactgagagaggcagttcacactgcatttctccc
cctttttatcccggacagcagtgaagtgcagcactaatctactactatct
gtcaagaacatgacattctatcagtcagaggactcacaataactcgaatc
acctgatgccttcctgtatgacatgataatctctacttctgcatctgtgg
tacatctggagcatttagtactacattttgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_70701145_70702080
seq2: B6Ng01-142E08.b_44_977

seq1  GAATTCTTTGAGATTAATAATTCTCAGATTAGTCCCTTGTCAGTGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGATTAATAATTCTCAGATTAGTCCCTTGTCAGTGGCTTT  50

seq1  GAACTATACCTCTTAAAAACATCTCACCAGTTTTATAGCCTAGCAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATACCTCTTAAAAACATCTCACCAGTTTTATAGCCTAGCAATATT  100

seq1  TTGTTCAAGATCTGGAAACCAACATTTTAAATACAGTCTTAAAGAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAAGATCTGGAAACCAACATTTTAAATACAGTCTTAAAGAAAAAA  150

seq1  GGACTTCACCATCTCAGTTTCTCTGGTGTAGTAGGAGTCTAGTTTAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCACCATCTCAGTTTCTCTGGTGTAGTAGGAGTCTAGTTTAGGCA  200

seq1  GGATACAAGGTCCTAAAGTGAAAAGGCTATTTCCTGTTGTGATGCATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAAGGTCCTAAAGTGAAAAGGCTATTTCCTGTTGTGATGCATTCA  250

seq1  CTAATCTCATGGGTAAAGATAATTAAATACATATGGCCGGCCTGTAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCATGGGTAAAGATAATTAAATACATATGGCCGGCCTGTAAAGC  300

seq1  TCTCATCTAGCTAATCTTTCTCCCGTCAAGTTTCCTTAAGAAATATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTAGCTAATCTTTCTCCCGTCAAGTTTCCTTAAGAAATATTATA  350

seq1  TTAATTTTTCTTACATTCAATGTATTCTGTTAATTATTCTTCTATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTCTTACATTCAATGTATTCTGTTAATTATTCTTCTATATAAA  400

seq1  AATATTCAACCAAGAATCTTCAAACACAATACTCTATTTTGGGCTTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAACCAAGAATCTTCAAACACAATACTCTATTTTGGGCTTTGGC  450

seq1  TCATTGGAAATAGTAAAATTCAGCTATAATATCCCTTAGAATAAGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGAAATAGTAAAATTCAGCTATAATATCCCTTAGAATAAGGAAGG  500

seq1  AAAGGGGGGGGATCTGAGGATATTCTGTTGACTCAGACTATGTCACCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGGGGATCTGAGGATATTCTGTTGACTCAGACTATGTCACCTAA  550

seq1  CCAGTGTTCCTGGGCTTTATGGAATTGGTGATTACTCTGGGATACTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTCCTGGGCTTTATGGAATTGGTGATTACTCTGGGATACTGTTC  600

seq1  ATTTATATTCACCCATTGTGGATGTAACAGGAAAATAAATCCATGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTCACCCATTGTGGATGTAACAGGAAAATAAATCCATGATTAA  650

seq1  AACCTCACAGGGATGGGTTCCTTAGCAAAGAAATACATTGTCAGCCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACAGGGATGGGTTCCTTAGCAAAGAAATACATTGTCAGCCACTA  700

seq1  GTAGGAAGTAAATAGCACTAAGGAGATATTGAGGAATGGATGTGTACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGTAAATAGCACTAAGGAGATATTGAGGAATGGATGTGTACAGA  750

seq1  AGGCAGGGAACTATGAAAATCTCACATGGTATAAAAGTCTAAGAAGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGAACTATGAAAATCTCACATGGTATAAAAGTCTAAGAAGTAGA  800

seq1  GTGAGGAAGGGTGTGATTTTAAAGAGAAACTTTACTGAGTATAGTGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAAGGGTGTGATTTTAAAGAGAAACTTTACTGAGTATAGTGACTG  850

seq1  TTTCTGAGTATCAAGAAACTTAAAAGAGATTTAGAAATATCCCTCATGCT  900
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TTTCTGAGTATCAAGAAACTT-AAAGAGATTTAG-AATATCCCTCATGCT  898

seq1  AGAACCATGCCAATGTGTGTGTGTGGAGGGGGTGGG  936
      ||||||||||||||||||||||||||||||||||||
seq2  AGAACCATGCCAATGTGTGTGTGTGGAGGGGGTGGG  934

seq1: chr16_70837143_70838250
seq2: B6Ng01-142E08.g_67_1149 (reverse)

seq1  GTACAATAATGTAAGTACTAAATGCTCCAGATGGTACCACAGATGCAGAA  50
      |||||| ||||| ||||||||||||||||||| |||||||||||||||| 
seq2  GTACAA-AATGT-AGTACTAAATGCTCCAGAT-GTACCACAGATGCAGA-  46

seq1  AGGTTAGGAGATGTAATCAATTGTCATACCAGAGAGGCATTCAGTGTGAT  100
           || |||  | ||||  ||||||| |||  ||||| |||| |||| 
seq2  -----AGTAGAGATTATCA--TGTCATA-CAGGAAGGCA-TCAG-GTGA-  85

seq1  TTCGAGTTTATTGTGAGTCCCTCCTGACTGAATTAGAATGTCATGTTCTG  150
      |||||| |||||||||||||   ||||||||  |||||||||||||||| 
seq2  TTCGAG-TTATTGTGAGTCC--TCTGACTGA--TAGAATGTCATGTTCT-  129

seq1  TGACAGGATAGTAGTAGATTAGGTGCCTGCACTTCACTGCTGTCCGGGAT  200
      ||||| ||||||||||||||| ||| ||||||||||||||||||||||||
seq2  TGACA-GATAGTAGTAGATTA-GTG-CTGCACTTCACTGCTGTCCGGGAT  176

seq1  AAAAAAGGGGGAGAAATGCAGTGTGAACTGCCTCTCTCAGTGCCTGTGCT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAGGGGGAGAAATGCAGTGTGAACTGCCTCTCTCAGTGCCTGTGCT  225

seq1  TGTCTAATAATGTGTGCTCTCCTTAAATCACAGTTCAAAGTCTTGACGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATAATGTGTGCTCTCCTTAAATCACAGTTCAAAGTCTTGACGAT  275

seq1  CATGTCTCGATATCTGTTCTGTGAGCTGAGGAAATGAATCACAATATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCGATATCTGTTCTGTGAGCTGAGGAAATGAATCACAATATTAT  325

seq1  CAGAAAATGCCAGAAAGCCCTGTGCACGGAACACACTGAAGAGTGGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGCCAGAAAGCCCTGTGCACGGAACACACTGAAGAGTGGGTGA  375

seq1  AGTTTCCAATTCTGAAGGAGCCAGCTTAAAGTTGCCTTCAGTTTATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCAATTCTGAAGGAGCCAGCTTAAAGTTGCCTTCAGTTTATGCAG  425

seq1  GAAAAATAGTAAGCAGAAACAGAGCTGGGAAACAGGGCTATAGATGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAGTAAGCAGAAACAGAGCTGGGAAACAGGGCTATAGATGTTCT  475

seq1  TTCTGTAATATGGGCTTACTTCTGGAAATTTGACAAATTCTAACTTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATATGGGCTTACTTCTGGAAATTTGACAAATTCTAACTTGAGA  525

seq1  AAAGTTGGTTTACAACGCTTTCCCCACACAGGTGAGAAAGATTAATGCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGTTTACAACGCTTTCCCCACACAGGTGAGAAAGATTAATGCGT  575

seq1  TATTTAGTTGGGCAAAGTTTTAAAGCATATATGCTTTTTGAAAATGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTTGGGCAAAGTTTTAAAGCATATATGCTTTTTGAAAATGATTA  625

seq1  ATCCTTTAACAAGTCTAGGTTAGGAAAATCCATTTTAACAATTACACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTAACAAGTCTAGGTTAGGAAAATCCATTTTAACAATTACACTTT  675

seq1  TGACCTGAAACATGGTTGCCCACCATAGTGTGGCTGATTGACTCTTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAAACATGGTTGCCCACCATAGTGTGGCTGATTGACTCTTTCAG  725

seq1  TAGCACTTAAAAATTCTGGAAGAAAATGTTTTGAAAGGGAACATATATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTAAAAATTCTGGAAGAAAATGTTTTGAAAGGGAACATATATTA  775

seq1  GGTTTTTTTTTTTTTTTTGAAAGATAAGTATAAAAAAAAAGGTAAGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTTTTTGAAAGATAAGTATAAAAAAAAAGGTAAGCCTG  825

seq1  ATTTGAAATTGGTTTTATAAAGTATTTCACTTGACATCACAGTGTGGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATTGGTTTTATAAAGTATTTCACTTGACATCACAGTGTGGTAA  875

seq1  TTGGAAGTTAAATTGTGGAGTAGAAATACTATCAGACTTCAAGATGGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTAAATTGTGGAGTAGAAATACTATCAGACTTCAAGATGGGAC  925

seq1  TTGTGGGCCACCAGAGAAATTGAACTCAAGTAGAATGTTCAAATTTGATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCCACCAGAGAAATTGAACTCAAGTAGAATGTTCAAATTTGATG  975

seq1  AATTTTTGCAACTTTTACATCCCACCTAAGTGACTGTGTAGGGAAAAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGCAACTTTTACATCCCACCTAAGTGACTGTGTAGGGAAAAAAT  1025

seq1  AAGTAGTTGTTTTCCTAGCAGTGTGTTAGCTGGTGTTCACTAATCAGTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTGTTTTCCTAGCAGTGTGTTAGCTGGTGTTCACTAATCAGTCA  1075

seq1  TGGAATTC  1108
      ||||||||
seq2  TGGAATTC  1083