BAC Information

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BAC

Clone NameB6Ng01-142E19
Chromosome16 (Build37)
Map Location 90,450,581 - 90,569,407
singlet/doubletdoublet
Overlap geneHunk
Upstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E19.bB6Ng01-142E19.g
ACCDH940530DH940531
length1,1361,081
definitionDH940530|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E19, 5' end.DH940531|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,568,224 - 90,569,407)(90,450,581 - 90,451,672)
sequence
gaattcattagcatcaaacttcactatttcaagatgtttactaaacaatc
ttagatatcttggtaggaaaacacttaacctggttaatggtggaatttac
tttgctctttgttcatgcaatggaatagcataatttggatcaaaataata
tttgcttgcttagcaccggtggcccatagacttgcatttatctctccttt
ccttttaaacctgcatgactatctggaagacagataactgtattcctccc
aggatactctgacagtgtgattttattaacccatgtttagcctttgatga
atcgattcagactgctgactcttcctttcccttctctaatctttaacttg
gggtttaaggaaacatgatgttgttctaaatattctttagttcaagcatt
aactcgatcatgactgaacactgtacctaattctccctctggtgttccat
agtttgttctcaggaagtctgaagaactgtcctttctggttcttagaaaa
ttctttcctgagcaatctgaggtcctcttgctctgcttcatttctatcac
ggcctcccctgaagtcctcgataagcagtggatttctctgggcccattaa
atggaatctttgctttttgtgcaaaagcactaggaggtgaaccatggaaa
agaaccgttttaagtctaggcagtcaagaagggacccatcaatcggacgg
gagcaagagcaaatgtctgcggacgttgggatgaggtgctccttttgttt
ctcggggcggtactattttgcttgggaggttacaaagttcaatgtcctca
gggccatcttcatttctgatattgaaaacaactggatgtcccaaggccac
cctcagttccatagtttgccagaagattcatggagctcagaaaagtcact
gtggtcatagggttttaacagcagaagttacagatcacacggatgcagat
ctcagtgacacaggaaacactgtgtctctcccagtgcatgtgtgaccggt
gtgattaccagaaactcctcatctaatgctgcagtctgtgaaagggtcta
acaactcatgatcattgtgaaaggagaatgcccgtctccaagtcaggctg
aaactgacatctaggctcggtgtgacaagtcctaag
gaattctcatctcaggaagtgtggcgattgctttttagaccaggaacctt
ccttgggttctcacctcttggctggtaaccatggggttaacatctaacta
accaagtatttcaagtcttcaagactgtaaaaaagacaaattacaactag
ttattcagatcaaatttgcctatgaggttttctagcagtgggctgcagtc
ctgaccatggttgggaaggtcctaccccaccctgtttgtggcgaaagtaa
aggaaatgatgtacacacagcagaagcaaggcacagagaacccaattgat
tatagtccacaggggccttccatgagcatgggacagcttgcgatgtgcag
aaaccccgctacttattgtaagagtagattacagtctgttcacctgtcac
ggtgggtgattgttcaccatgcctggaaaggtcttcagtccaaacttaaa
acatatggaaacatcttgggccaaacttaatttgatagtataaggtgggc
aaagcctattgggaaatgacttggtgtcagaggaaggaggctctggtctt
tgagtttctgttagtttcttctttctctcacctcccaatgacctaaacaa
taccataaatgtatagcctagaagataacaaggtgtttcattcagcctgc
ttcccaatagtactataaatcaaagatacattgtatagcctagaaggtat
ccagtggtttgttcatcctactttccaggagttgaggggaagaagccagt
ttcttacgggttttcttgcctctaggatgggtagtgaggatcaaaggtaa
agactaagccttattattacaatgttaacttgaagccctttgaacctctt
cttcttcaaacgatttctttaggtggttttcaagaggattagagctattg
catttcttatggtttccctgtttctgaaaccatttggtttaaataacttg
ggccagtgtttcaacttagctagaggttatcagagtagattttgattcga
tcaatatatttttcttctacaaagaagaaggaagaggcagcaaaggcgag
gcagctggaatgtctggtaacgctctctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90568224_90569407
seq2: B6Ng01-142E19.b_48_1183 (reverse)

seq1  CTTAGGAAAACTCTTGTCACACAACCGAGCCCTAGATAGCTCAGTATCAG  50
      |||||||     ||||||||   |||||| |||||||   ||||| ||||
seq2  CTTAGGA-----CTTGTCAC---ACCGAG-CCTAGAT--GTCAGTTTCAG  39

seq1  CCTGACTTGTGGAGACAGGGCATTCTTTCCCTTTCACAAATGATCAATTG  100
      |||||||  ||||||| |||||||||   |||||||| ||||||||  ||
seq2  CCTGACT--TGGAGAC-GGGCATTCT---CCTTTCAC-AATGATCA--TG  80

seq1  AGTGTGTAGGACACCTCTACATGACTGCAAAGCATTTAGATGGAAGAGAG  150
      ||| |||  ||| | |  ||| ||||||  |||| |||||||  || |||
seq2  AGT-TGTTAGACCCTTTCACA-GACTGC--AGCA-TTAGATG--AG-GAG  122

seq1  TTTCCTGGTTAATCACACCCGGGGTCACACAATGCACTGGGGAGAGACAC  200
      ||| |||| ||||||||||   |||||||| ||||||| |||||||||||
seq2  TTT-CTGG-TAATCACACC---GGTCACAC-ATGCACT-GGGAGAGACAC  165

seq1  AGGTGTTTTCCTGTGTCACCTGAGGATCTTGCATCCCTTGGTTGATCTGT  250
      | ||| |||||||||||| |||| |||| |||||||   |  ||||||||
seq2  A-GTG-TTTCCTGTGTCA-CTGA-GATC-TGCATCC---GTGTGATCTGT  207

seq1  AACTTCTTGCTGTTAAAAACCCTATGACCACAGTGACTTTTCTGAGCTCC  300
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  AACTTC-TGCTGTT-AAAACCCTATGACCACAGTGACTTTTCTGAGCTCC  255

seq1  ATGAATCCTTCTGGCAAACTATGGAACCTGAGGGTGGCCTTGGGGACATC  350
      |||||| ||||||||||||||||||| |||||||||||||| ||||||||
seq2  ATGAAT-CTTCTGGCAAACTATGGAA-CTGAGGGTGGCCTT-GGGACATC  302

seq1  CAGTTGTTTTCAATATCAGAAATGAAGATGGCCCTGAGGACATTGAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTTTCAATATCAGAAATGAAGATGGCCCTGAGGACATTGAACTT  352

seq1  TGTAACCTCCCAAGCAAAATAGTACCGCCCCGAGAAACAAAAGGAGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTCCCAAGCAAAATAGTACCGCCCCGAGAAACAAAAGGAGCACC  402

seq1  TCATCCCAACGTCCGCAGACATTTGCTCTTGCTCCCGTCCGATTGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCAACGTCCGCAGACATTTGCTCTTGCTCCCGTCCGATTGATGGG  452

seq1  TCCCTTCTTGACTGCCTAGACTTAAAACGGTTCTTTTCCATGGTTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTGACTGCCTAGACTTAAAACGGTTCTTTTCCATGGTTCACCT  502

seq1  CCTAGTGCTTTTGCACAAAAAGCAAAGATTCCATTTAATGGGCCCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCTTTTGCACAAAAAGCAAAGATTCCATTTAATGGGCCCAGAGA  552

seq1  AATCCACTGCTTATCGAGGACTTCAGGGGAGGCCGTGATAGAAATGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTGCTTATCGAGGACTTCAGGGGAGGCCGTGATAGAAATGAAGC  602

seq1  AGAGCAAGAGGACCTCAGATTGCTCAGGAAAGAATTTTCTAAGAACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAGGACCTCAGATTGCTCAGGAAAGAATTTTCTAAGAACCAGA  652

seq1  AAGGACAGTTCTTCAGACTTCCTGAGAACAAACTATGGAACACCAGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGTTCTTCAGACTTCCTGAGAACAAACTATGGAACACCAGAGGG  702

seq1  AGAATTAGGTACAGTGTTCAGTCATGATCGAGTTAATGCTTGAACTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGGTACAGTGTTCAGTCATGATCGAGTTAATGCTTGAACTAAAG  752

seq1  AATATTTAGAACAACATCATGTTTCCTTAAACCCCAAGTTAAAGATTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAGAACAACATCATGTTTCCTTAAACCCCAAGTTAAAGATTAGA  802

seq1  GAAGGGAAAGGAAGAGTCAGCAGTCTGAATCGATTCATCAAAGGCTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAAGGAAGAGTCAGCAGTCTGAATCGATTCATCAAAGGCTAAAC  852

seq1  ATGGGTTAATAAAATCACACTGTCAGAGTATCCTGGGAGGAATACAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTAATAAAATCACACTGTCAGAGTATCCTGGGAGGAATACAGTTA  902

seq1  TCTGTCTTCCAGATAGTCATGCAGGTTTAAAAGGAAAGGAGAGATAAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCCAGATAGTCATGCAGGTTTAAAAGGAAAGGAGAGATAAATG  952

seq1  CAAGTCTATGGGCCACCGGTGCTAAGCAAGCAAATATTATTTTGATCCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTATGGGCCACCGGTGCTAAGCAAGCAAATATTATTTTGATCCAA  1002

seq1  ATTATGCTATTCCATTGCATGAACAAAGAGCAAAGTAAATTCCACCATTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTATTCCATTGCATGAACAAAGAGCAAAGTAAATTCCACCATTA  1052

seq1  ACCAGGTTAAGTGTTTTCCTACCAAGATATCTAAGATTGTTTAGTAAACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTAAGTGTTTTCCTACCAAGATATCTAAGATTGTTTAGTAAACA  1102

seq1  TCTTGAAATAGTGAAGTTTGATGCTAATGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  TCTTGAAATAGTGAAGTTTGATGCTAATGAATTC  1136

seq1: chr16_90450581_90451672
seq2: B6Ng01-142E19.g_66_1146

seq1  GAATTCTCATCTCAGGAAGTGTGGCGATTGCTTTTTAGACCAGGAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTCAGGAAGTGTGGCGATTGCTTTTTAGACCAGGAACCTT  50

seq1  CCTTGGGTTCTCACCTCTTGGCTGGTAACCATGGGGTTAACATCTAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTTCTCACCTCTTGGCTGGTAACCATGGGGTTAACATCTAACTA  100

seq1  ACCAAGTATTTCAAGTCTTCAAGACTGTAAAAAAGACAAATTACAACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTATTTCAAGTCTTCAAGACTGTAAAAAAGACAAATTACAACTAG  150

seq1  TTATTCAGATCAAATTTGCCTATGAGGTTTTCTAGCAGTGGGCTGCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGATCAAATTTGCCTATGAGGTTTTCTAGCAGTGGGCTGCAGTC  200

seq1  CTGACCATGGTTGGGAAGGTCCTACCCCACCCTGTTTGTGGCGAAAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGGTTGGGAAGGTCCTACCCCACCCTGTTTGTGGCGAAAGTAA  250

seq1  AGGAAATGATGTACACACAGCAGAAGCAAGGCACAGAGAACCCAATTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGATGTACACACAGCAGAAGCAAGGCACAGAGAACCCAATTGAT  300

seq1  TATAGTCCACAGGGGCCTTCCATGAGCATGGGACAGCTTGCGATGTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCACAGGGGCCTTCCATGAGCATGGGACAGCTTGCGATGTGCAG  350

seq1  AAACCCCGCTACTTATTGTAAGAGTAGATTACAGTCTGTTCACCTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCGCTACTTATTGTAAGAGTAGATTACAGTCTGTTCACCTGTCAC  400

seq1  GGTGGGTGATTGTTCACCATGCCTGGAAAGGTCTTCAGTCCAAACTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGATTGTTCACCATGCCTGGAAAGGTCTTCAGTCCAAACTTAAA  450

seq1  ACATATGGAAACATCTTGGGCCAAACTTAATTTGATAGTATAAGGTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGAAACATCTTGGGCCAAACTTAATTTGATAGTATAAGGTGGGC  500

seq1  AAAGCCTATTGGGAAATGACTTGGTGTCAGAGGAAGGAGGCTCTGGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTATTGGGAAATGACTTGGTGTCAGAGGAAGGAGGCTCTGGTCTT  550

seq1  TGAGTTTCTGTTAGTTTCTTCTTTCTCTCACCTCCCAATGACCTAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCTGTTAGTTTCTTCTTTCTCTCACCTCCCAATGACCTAAACAA  600

seq1  TACCATAAATGTATAGCCTAGAAGATAACAAGGTGTTTCATTCAGCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAATGTATAGCCTAGAAGATAACAAGGTGTTTCATTCAGCCTGC  650

seq1  TTCCCAATAGTACTATAAATCAAAGATACATTGTATAGCCTAGAAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATAGTACTATAAATCAAAGATACATTGTATAGCCTAGAAGGTAT  700

seq1  CCAGTGGTTTGTTCATCCTACTTTCCAGGAGTTGAGGGGAAGAAGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTTTGTTCATCCTACTTTCCAGGAGTTGAGGGGAAGAAGCCAGT  750

seq1  TTCTTACGGGTTTTCTTGCCTCTAGGATGGGTAGTGAGGATCAAAGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACGGGTTTTCTTGCCTCTAGGATGGGTAGTGAGGATCAAAGGTAA  800

seq1  AGACTAAGCCTTATTATTACAATGTTAACTTGAAAGCCCTTTGAACCTC-  849
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  AGACTAAGCCTTATTATTACAATGTTAACTTG-AAGCCCTTTGAACCTCT  849

seq1  TCTTCTTCAAACGATTTCTTTAGGTGGTTTTCAAAGAGGATTAGAGCTAT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTTCTTCAAACGATTTCTTTAGGTGGTTTTC-AAGAGGATTAGAGCTAT  898

seq1  TGCCATTTCTTAATGGTTTCCCTGTTTCTGAAACCATTTGGTTTAAATAA  949
      || |||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TG-CATTTCTT-ATGGTTTCCCTGTTTCTGAAACCATTTGGTTTAAAT-A  945

seq1  ACTTGGGCCAGTGTTTCAACTTAGCTAGA-GTTATCAGGAGTAAGATTTT  998
      ||||||||||||||||||||||||||||| ||||||| |||| ||| |||
seq2  ACTTGGGCCAGTGTTTCAACTTAGCTAGAGGTTATCA-GAGT-AGA-TTT  992

seq1  TGATTCGATC-ATATATTTTTCTTCTTACAAAAAGAAGAGAGGAAGAGGC  1047
      |||||||||| |||||||||||||||   | |||||||| ||||||||||
seq2  TGATTCGATCAATATATTTTTCTTCT---ACAAAGAAGA-AGGAAGAGGC  1038

seq1  AGGCAAAAGCGAAGGCAGCCTGAATGTCTGGGTACGCTCTCTCAC  1092
      | ||||| ||| |||||||  ||||||||||  ||||||||||||
seq2  A-GCAAAGGCG-AGGCAGCTGGAATGTCTGGTAACGCTCTCTCAC  1081