BAC Information

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BAC

Clone NameB6Ng01-142L16
Chromosome16 (Build37)
Map Location 34,862,393 - 35,001,449
singlet/doubletdoublet
Overlap geneMylk
Upstream geneItgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14
Downstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142L16.bB6Ng01-142L16.g
ACCDH940851DH940852
length1,035435
definitionDH940851|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L16, 5' end.DH940852|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,862,393 - 34,863,443)(35,001,009 - 35,001,449)
sequence
gaattccaagctttgcagcctggcttggcccttattctctatgatccata
ttaaggaagactggggtgtgttgggaatgcagggaaattatataaaccag
acatactcaggtgtggtggttgctgcatgcctttcatctcagcactcagg
aggcagacacagatagatctctgagttcaaggctagcctggtctacataa
aactgagataacttgtgaactttctccttggttcctactgttcaggaagt
tgtatctgatggctcaatccagagagaacattttcatgtcagaagcaagg
aggtgggacaactatagaagagcaagataaggttcacgttcctcctcttt
tggtgggttttaattgggataaattggctcaggcatttaagatgtgttgt
gcttctaactacgggaaaatggtctcatgcctgcagcctctctctgtgtg
aatgggcctgcgtgcatcccacttctgtttgagctgatgtgtttggggcc
accttaagccccataggcctagatgatgtattcatcatccattaccatgg
agatgctgtcaactccgcgccatgttagcatcgacattcacaaagcgact
ccagcagccagcccactggcctcctgtgcagctctgggctggggcatccc
actgtgttcatccctgaacagaacagaggtcctgggatgaaacgtttgac
tgagaggtggaaacttttaacctttagaggcagggttgtgcagtgagtgg
agtcagatgccctggttgagttttagctctgttgcttttacaagtgtgag
cacatggccttcctgagacttcctttcctttaaaggcagaggcgacacac
agagtggtgcatggatcagcccagccctggccatcagaagtggtgcccag
tggttttcttgagcggcactacatccttagatacttacagaggaagtccg
tgagaagagctttcttgctcacttctagtttgcattagagccaagagcgt
agaacagtgctcgggaaggaccacccaggtaccca
tcatgcaaatgtctggagctgccagactcctgcacagaggagtaagttta
gtttcctaaggattttagaggagaggagacaccccccttcctgtacctct
cacccccccaaggcagccagagtcatccacaagccggggaacttggtttc
aggatggaagaaacatgataaatgtcctccttgctgtaactcaggcaagg
attagagccaggaaacccagcagttggagcggggagagaaacgcagagct
tgaaagtgcagagttggaaggcaatgtgtctcctgagtcagcttggctca
accgcttccagaatgagacaccgcaggatgggacaaggcgggttctctgg
attgggtgggagggggctggacattctatctccaggggatctgggttgag
ctacagcaggaggcttggggaggggggggcggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34862393_34863443
seq2: B6Ng01-142L16.b_46_1080

seq1  GAATTCCAAGCTTTGCAGCCTGGCTTGGCCCTTATTCTCTATGATCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTTTGCAGCCTGGCTTGGCCCTTATTCTCTATGATCCATA  50

seq1  TTAAGGAAGACTGGGGTGTGTTGGGAATGCAGGGAAATTATATAAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAGACTGGGGTGTGTTGGGAATGCAGGGAAATTATATAAACCAG  100

seq1  ACATACTCAGGTGTGGTGGTTGCTGCATGCCTTTCATCTCAGCACTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCAGGTGTGGTGGTTGCTGCATGCCTTTCATCTCAGCACTCAGG  150

seq1  AGGCAGACACAGATAGATCTCTGAGTTCAAGGCTAGCCTGGTCTACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACACAGATAGATCTCTGAGTTCAAGGCTAGCCTGGTCTACATAA  200

seq1  AACTGAGATAACTTGTGAACTTTCTCCTTGGTTCCTACTGTTCAGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATAACTTGTGAACTTTCTCCTTGGTTCCTACTGTTCAGGAAGT  250

seq1  TGTATCTGATGGCTCAATCCAGAGAGAACATTTTCATGTCAGAAGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGATGGCTCAATCCAGAGAGAACATTTTCATGTCAGAAGCAAGG  300

seq1  AGGTGGGACAACTATAGAAGAGCAAGATAAGGTTCACGTTCCTCCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGACAACTATAGAAGAGCAAGATAAGGTTCACGTTCCTCCTCTTT  350

seq1  TGGTGGGTTTTAATTGGGATAAATTGGCTCAGGCATTTAAGATGTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTTTTAATTGGGATAAATTGGCTCAGGCATTTAAGATGTGTTGT  400

seq1  GCTTCTAACTACGGGAAAATGGTCTCATGCCTGCAGCCTCTCTCTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAACTACGGGAAAATGGTCTCATGCCTGCAGCCTCTCTCTGTGTG  450

seq1  AATGGGCCTGCGTGCATCCCACTTCTGTTTGAGCTGATGTGTTTGGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCTGCGTGCATCCCACTTCTGTTTGAGCTGATGTGTTTGGGGCC  500

seq1  ACCTTAAGCCCCATAGGCCTAGATGATGTATTCATCATCCATTACCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAGCCCCATAGGCCTAGATGATGTATTCATCATCCATTACCATGG  550

seq1  AGATGCTGTCAACTCCGCGCCATGTTAGCATCGACATTCACAAAGCGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTCAACTCCGCGCCATGTTAGCATCGACATTCACAAAGCGACT  600

seq1  CCAGCAGCCAGCCCACTGGCCTCCTGTGCAGCTCTGGGCT-GGGCATCCC  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGCAGCCAGCCCACTGGCCTCCTGTGCAGCTCTGGGCTGGGGCATCCC  650

seq1  ACTGTGTTCATCCCTGAACAGAACAGAGGTCCTGGGATGAAACGTTTGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCATCCCTGAACAGAACAGAGGTCCTGGGATGAAACGTTTGAC  700

seq1  TGAGAGGTGGAAACTTTTAACCTTTAGAGGCAGGGTTGTGCAGTGAGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTGGAAACTTTTAACCTTTAGAGGCAGGGTTGTGCAGTGAGTGG  750

seq1  AGTCAGATGCCCTGGTTGAGTTTTAGCTCTGTTGCTTTTACAAGTGTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATGCCCTGGTTGAGTTTTAGCTCTGTTGCTTTTACAAGTGTGAG  800

seq1  CACATGGCCTTCCTGAGACTTCCTTTCCTTT-AAGGCAGAGGGCGACACA  848
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  CACATGGCCTTCCTGAGACTTCCTTTCCTTTAAAGGCAGA-GGCGACACA  849

seq1  CAGAGTGGTGCATGGATCAGCCCAGCCCCTGGCCATCAGGAAGTGGTGCC  898
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CAGAGTGGTGCATGGATCAGCCCAG-CCCTGGCCATCA-GAAGTGGTGCC  897

seq1  CAGTGGTTTTCTTGAGCGGCAACTAACATCCTTAGAATACTTACAGAGGG  948
      |||||||||||||||||||| ||| |||||||||| ||||||||||| ||
seq2  CAGTGGTTTTCTTGAGCGGC-ACT-ACATCCTTAG-ATACTTACAGA-GG  943

seq1  AAGTCCGTGAGAAAGAAGGCTTTCTTGCCCAACTTCTAGTTTGGCAATTA  998
      ||||||||||| ||||  |||||||||| | ||||||||||||   ||||
seq2  AAGTCCGTGAG-AAGA--GCTTTCTTGCTC-ACTTCTAGTTTG--CATTA  987

seq1  GAGCCAAGAAGCGTAAGAACAGGTGCCTCGGGACAGGACCACACAGGTAC  1048
      |||||||| ||||| |||||| ||| ||||||| |||||||| |||||||
seq2  GAGCCAAG-AGCGT-AGAACA-GTG-CTCGGGA-AGGACCACCCAGGTAC  1032

seq1  CCA  1051
      |||
seq2  CCA  1035

seq1: chr16_35001009_35001449
seq2: B6Ng01-142L16.g_68_508 (reverse)

seq1  CCCCCGCCCCCCCCTCCCCAAGCCTCCTGCTGTAGCTCAACCCAGATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCCCCCCCCTCCCCAAGCCTCCTGCTGTAGCTCAACCCAGATCCC  50

seq1  CTGGAGATAGAATGTCCAGCCCCCTCCCACCCAATCCAGAGAACCCGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATAGAATGTCCAGCCCCCTCCCACCCAATCCAGAGAACCCGCCT  100

seq1  TGTCCCATCCTGCGGTGTCTCATTCTGGAAGCGGTTGAGCCAAGCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATCCTGCGGTGTCTCATTCTGGAAGCGGTTGAGCCAAGCTGACT  150

seq1  CAGGAGACACATTGCCTTCCAACTCTGCACTTTCAAGCTCTGCGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACACATTGCCTTCCAACTCTGCACTTTCAAGCTCTGCGTTTCTC  200

seq1  TCCCCGCTCCAACTGCTGGGTTTCCTGGCTCTAATCCTTGCCTGAGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCTCCAACTGCTGGGTTTCCTGGCTCTAATCCTTGCCTGAGTTAC  250

seq1  AGCAAGGAGGACATTTATCATGTTTCTTCCATCCTGAAACCAAGTTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGAGGACATTTATCATGTTTCTTCCATCCTGAAACCAAGTTCCCC  300

seq1  GGCTTGTGGATGACTCTGGCTGCCTTGGGGGGGTGAGAGGTACAGGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGGATGACTCTGGCTGCCTTGGGGGGGTGAGAGGTACAGGAAGG  350

seq1  GGGGTGTCTCCTCTCCTCTAAAATCCTTAGGAAACTAAACTTACTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTCTCCTCTCCTCTAAAATCCTTAGGAAACTAAACTTACTCCTCT  400

seq1  GTGCAGGAGTCTGGCAGCTCCAGACATTTGCATGAGAATTC  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAGTCTGGCAGCTCCAGACATTTGCATGAGAATTC  441