BAC Information

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BAC

Clone NameB6Ng01-143A03
Chromosome16 (Build37)
Map Location 35,607,533 - 35,745,276
singlet/doubletdoublet
Overlap geneSema5b, Dirc2
Upstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5, EG546663
Downstream geneHspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A03.bB6Ng01-143A03.g
ACCDH941059DH941060
length851489
definitionDH941059|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A03, 5' end.DH941060|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,744,400 - 35,745,276)(35,607,533 - 35,608,027)
sequence
gaattctacaaagttagcaggtaactgatcactcaactttctccctctcc
caactgtgtggggtcgcgtcatgactgtggctgagattttcagagcagct
tgaattgggccacttagaatatttcagggccagcaagatggctgagcagg
aaaggcattcactgccccaattgatggctggagttcaatccctgagaccc
atatggtagaaggaaagaaccaactactgcaagatgtcctctgacctcca
cacatgtgctacggcacatgtgtgcacacgcataatttataaaatagatt
tagcttttctctttgttggttgagggaggttgggaagagtctctcataat
gtagcccaggctggcctcctgttccctatgtagctaaggttgccttctcc
tcccaagtgtaccaccatacccagcttctgtagttctaggcaagcattct
accactaggactacattctgccccaagaaaaaaataaaaatttaagagca
tttcaaaggctgctgaaaatgcccactgcttttttccttcaaaataagag
tttgtcttggagtttcccccttaatattaaaagaaacagtaaatttatgt
tacccgcaacaaattggttataagagcaaaataggctagaagctgtggta
gtaacatagtgaaaacacagtggctgtgctgttaaatcatcagaagtagc
tgctgtccctgagtggtcattgtaagaagaaagcaccccccttactctgc
ggccgcattaaagtacatccctgacaggccaatactggtaagcttgttcc
cgaacttgttctaagtaatctgtcccaagagttgtctgttgtaaacacaa
a
atttgtagagaaacccatgttggctgatctcccactgcatggcaggctct
gtactttgttctcgggagacagagcctagaggatctgtggagttcccatc
tgaggcagatgtggccctcactgatgtccactcttgttcccaaattcgag
gcttggacagcccaggatgggaaatataaaatgtctgctggtgacttcac
ctgtattaagtggtgctcatttatcttcttgaagagaagaggttttaggg
acgggagggagtatgatacttgggaaatgctttgggtttccactaataga
aaaacactcacggtaactttaagcatagggatttaaaaatcactttacca
aaggttaggtctttgcttggtggctcaacaggatcaaaagattccgtttc
ctctcagtttgtcccctgtcttatctctgtctggctgctttggttgaaat
catcacacttgtactagactagatgggggagggggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35744400_35745276
seq2: B6Ng01-143A03.b_47_897 (reverse)

seq1  TTTGTGTTTACAAAAACAGACAACTCTTTGGGAACCAGATTTACTTTAGG  50
      |||||||||||   |||||||||||| ||||||  |||| |||| |||| 
seq2  TTTGTGTTTAC---AACAGACAACTC-TTGGGA--CAGA-TTAC-TTAG-  41

seq1  AAACAAAGTTTCGGGAACAAGGCTTACCAGTTTTTGGGCTCTGTCAGGGA  100
       |||||   ||||||||||| |||||||||| ||  ||| ||||||||||
seq2  -AACAA--GTTCGGGAACAA-GCTTACCAGTATT--GGC-CTGTCAGGGA  84

seq1  TGTACTTTGATGCGGGCCGCAGAGTAAGGGGGGTGCTTTCTTCTAACAAT  150
      |||||||| |||| |||||||||||||||||||||||||||||| |||||
seq2  TGTACTTTAATGC-GGCCGCAGAGTAAGGGGGGTGCTTTCTTCTTACAAT  133

seq1  GACCAACCTCAGGGACAGCAGCTACTTCCTGGAATGATTTAACAAGCACA  200
      |||||  |||||||||||||||||||| |||  |||||||||| ||||||
seq2  GACCA--CTCAGGGACAGCAGCTACTT-CTG--ATGATTTAAC-AGCACA  177

seq1  GCCACTTGTGTTTTCACTATGTTACTACCAACAGCTTCTAGCCTATTTTG  250
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCAC-TGTGTTTTCACTATGTTACTACC-ACAGCTTCTAGCCTATTTTG  225

seq1  CTCTTATAACCAATTTGTTGCGGGTAACATAAATTTTACTGTTTCTTTTA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTTATAACCAATTTGTTGCGGGTAACATAAA-TTTACTGTTTCTTTTA  274

seq1  ATATTAAGGGGGAAACTCCAAGACAAACTCTTATTTTGAAGGAAAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGGGGAAACTCCAAGACAAACTCTTATTTTGAAGGAAAAAAGC  324

seq1  AGTGGGCATTTTCAGCAGCCTTTGAAATGCTCTTAAATTTTTATTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCATTTTCAGCAGCCTTTGAAATGCTCTTAAATTTTTATTTTTTT  374

seq1  CTTGGGGCAGAATGTAGTCCTAGTGGTAGAATGCTTGCCTAGAACTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCAGAATGTAGTCCTAGTGGTAGAATGCTTGCCTAGAACTACAG  424

seq1  AAGCTGGGTATGGTGGTACACTTGGGAGGAGAAGGCAACCTTAGCTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGTATGGTGGTACACTTGGGAGGAGAAGGCAACCTTAGCTACAT  474

seq1  AGGGAACAGGAGGCCAGCCTGGGCTACATTATGAGAGACTCTTCCCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGGAGGCCAGCCTGGGCTACATTATGAGAGACTCTTCCCAACC  524

seq1  TCCCTCAACCAACAAAGAGAAAAGCTAAATCTATTTTATAAATTATGCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAACCAACAAAGAGAAAAGCTAAATCTATTTTATAAATTATGCGT  574

seq1  GTGCACACATGTGCCGTAGCACATGTGTGGAGGTCAGAGGACATCTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACATGTGCCGTAGCACATGTGTGGAGGTCAGAGGACATCTTGCA  624

seq1  GTAGTTGGTTCTTTCCTTCTACCATATGGGTCTCAGGGATTGAACTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGTTCTTTCCTTCTACCATATGGGTCTCAGGGATTGAACTCCAG  674

seq1  CCATCAATTGGGGCAGTGAATGCCTTTCCTGCTCAGCCATCTTGCTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATTGGGGCAGTGAATGCCTTTCCTGCTCAGCCATCTTGCTGGCC  724

seq1  CTGAAATATTCTAAGTGGCCCAATTCAAGCTGCTCTGAAAATCTCAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATTCTAAGTGGCCCAATTCAAGCTGCTCTGAAAATCTCAGCCA  774

seq1  CAGTCATGACGCGACCCCACACAGTTGGGAGAGGGAGAAAGTTGAGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGACGCGACCCCACACAGTTGGGAGAGGGAGAAAGTTGAGTGAT  824

seq1  CAGTTACCTGCTAACTTTGTAGAATTC  877
      |||||||||||||||||||||||||||
seq2  CAGTTACCTGCTAACTTTGTAGAATTC  851

seq1: chr16_35607533_35608027
seq2: B6Ng01-143A03.g_66_560

seq1  GAATTCATTTGTAGAGAAACCCATGTTGGCTGATCTCCCACTGCATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTAGAGAAACCCATGTTGGCTGATCTCCCACTGCATGGCA  50

seq1  GGCTCTGTACTTTGTTCTCGGGAGACAGAGCCTAGAGGATCTGTGGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTACTTTGTTCTCGGGAGACAGAGCCTAGAGGATCTGTGGAGTT  100

seq1  CCCATCTGAGGCAGATGTGGCCCTCACTGATGTCCACTCTTGTTCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGAGGCAGATGTGGCCCTCACTGATGTCCACTCTTGTTCCCAAA  150

seq1  TTCGAGGCTTGGACAGCCCAGGATGGGAAATATAAAATGTCTGCTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCTTGGACAGCCCAGGATGGGAAATATAAAATGTCTGCTGGTGA  200

seq1  CTTCACCTGTATTAAGTGGTGCTCATTTATCTTCTTGAAGAGAAGAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTGTATTAAGTGGTGCTCATTTATCTTCTTGAAGAGAAGAGGTT  250

seq1  TTAGGGACGGGAGGGAGTATGATACTTGGGAAATGCTTTGGGTTTCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGACGGGAGGGAGTATGATACTTGGGAAATGCTTTGGGTTTCCACT  300

seq1  AATAGAAAAACACTCACGGTAACTTTAAGCATAGGGATTTAAAAATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAACACTCACGGTAACTTTAAGCATAGGGATTTAAAAATCACT  350

seq1  TTACCAAAGGTTAGGTCTTTGCTTGGTGGCTCAACAGGATCAAAAGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAAGGTTAGGTCTTTGCTTGGTGGCTCAACAGGATCAAAAGATTC  400

seq1  CGTTTCCTCTCAGTTTGTCCCCTGTCTTATCTCTGTCTGGCTGCTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCTCTCAGTTTGTCCCCTGTCTTATCTCTGTCTGGCTGCTTTGGT  450

seq1  TGAAATCATCACACTTGTACTAGACTAGATGGGGGAGGGGGAAGG  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATCACACTTGTACTAGACTAGATGGGGGAGGGGGAAGG  495