BAC Information

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BAC

Clone NameB6Ng01-143F07
Chromosome16 (Build37)
Map Location 70,716,833 - 70,838,250
singlet/doubletdoublet
Overlap genenone
Upstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
Downstream geneLOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143F07.bB6Ng01-143F07.g
ACCDH941295DH941296
length1,1461,079
definitionDH941295|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F07, 5' end.DH941296|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,716,833 - 70,718,009)(70,837,147 - 70,838,250)
sequence
gaattctgtcccaagtcccaaattttacataagcaatgtttaggcatgtt
ttaccatgtaaacttatgcataagtgctttgtaagtctttaaacaatatt
cagcataaaagagcattattttcattgcaataatgtacatttacaaagca
attacttattccataataaaaaagaaaggtttaaactcttaagtgaatta
cttggagcagtggttatagtatttaatatatcctatacttcatttctcct
agtaacatcaccaggtaaattctaaaaactcaaaatgctttgtattccag
tttaaaattgtggtttctcaagctttctttgaggttgtgggtctctattc
actcttttggaatctacatataaattgctgtgtactgtcgatttttgtat
agtgaaatacatttcaaggtcaaacatcgtgattttaaaaacagacagaa
aacaattatatttgacaaacaatttttacgtgacctgaaaatgtcttacg
atgaaaaaaaaaaatcctttcatactctgattttcttagacgtgtttttg
tagtgaaaacttgtggaatcctttcccttcactttacaggctgctggaac
aagttagcaaagtttcaatacaggttttgaattttacctttctttgctaa
atagcgtaaggtttcccataggaatcaccaagtacatattagtgtggtta
caactaatactgcaatcatttacgcaattacagtgaatacccaggagatg
ggagcgccttcagctctagcagagtacagatttagcgctgaaaacacttg
acagaactgtaaagctacatctagtgttgaaaataccttttgttgagttt
agatatataaactccctctcctaacaagatccattgtgttctccgggtca
cactaagtatttggaaactttaatgacattagagccacattgaagagtac
tacccccacatttcagattcttagtttgggtttgcctacatatcgttata
atctttatttaaaaaaatgaaaatagattctttctcatacactagagcac
acagtttcctctcatcctctcctcctaagggacccttcccacactccttt
cccagaattaacttccccccccccgacccaattctcttcagaaaag
gaattccatgactgattagtgaacaccagctaacacactgctaggaaaac
aactacttattttttccctacacagtcacttaggtgggatgtaaaagttg
caaaaattcatcaaatttgaacattctacttgagttcaatttctctggtg
gcccacaagtcccatcttgaagtctgatagtatttctactccacaattta
acttccaattaccacactgtgatgtcaagtgaaatactttataaaaccaa
tttcaaatcaggcttacctttttttttatacttatctttcaaaaaaaaaa
aaaaaacctaatatatgttccctttcaaaacattttcttccagaattttt
aagtgctactgaaagagtcaatcagccacactatggtgggcaaccatgtt
tcaggtcaaaagtgtaattgttaaaatggattttcctaacctagacttgt
taaaggattaatcattttcaaaaagcatatatgctttaaaactttgccca
actaaataacgcattaatctttctcacctgtgtggggaaagcgttgtaaa
ccaacttttctcaagttagaatttgtcaaatttccagaagtaagcccata
ttacagaaagaacatctatagccctgtttcccagctctgtttctgcttac
tatttttcctgcataaactgaaggcaactttaagctggctccttcagaat
tggaaacttcacccactcttcagtgtgttccgtgcacagggctttctggc
attttctgataatattgtgattcatttcctcagctcacagaacagatatc
gagacatgatcgtcaagactttgaactgtgatttaaggagagcacacatt
attagacaagcacaggcactgagagagcagttcacactgcatttctcccc
ttttttatcccggacagcagtgagtgcagcacctaatctactactatctg
tcacagacatgacattctatcagtcaggaggactcacaataactcgaatc
acactgatgcctctctgatgacaatgataatctctacttctgcatctgtg
gtacatctggacattagtacttacttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_70716833_70718009
seq2: B6Ng01-143F07.b_47_1192

seq1  GAATTCTGTCCCAAGTCCCAAATTTTACATAAGCAATGTTTAGGCATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCCAAGTCCCAAATTTTACATAAGCAATGTTTAGGCATGTT  50

seq1  TTACCATGTAAACTTATGCATAAGTGCTTTGTAAGTCTTTAAACAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGTAAACTTATGCATAAGTGCTTTGTAAGTCTTTAAACAATATT  100

seq1  CAGCATAAAAGAGCATTATTTTCATTGCAATAATGTACATTTACAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAAAGAGCATTATTTTCATTGCAATAATGTACATTTACAAAGCA  150

seq1  ATTACTTATTCCATAATAAAAAAGAAAGGTTTAAACTCTTAAGTGAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATTCCATAATAAAAAAGAAAGGTTTAAACTCTTAAGTGAATTA  200

seq1  CTTGGAGCAGTGGTTATAGTATTTAATATATCCTATACTTCATTTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCAGTGGTTATAGTATTTAATATATCCTATACTTCATTTCTCCT  250

seq1  AGTAACATCACCAGGTAAATTCTAAAAACTCAAAATGCTTTGTATTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATCACCAGGTAAATTCTAAAAACTCAAAATGCTTTGTATTCCAG  300

seq1  TTTAAAATTGTGGTTTCTCAAGCTTTCTTTGAGGTTGTGGGTCTCTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTGTGGTTTCTCAAGCTTTCTTTGAGGTTGTGGGTCTCTATTC  350

seq1  ACTCTTTTGGAATCTACATATAAATTGCTGTGTACTGTCGATTTTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGGAATCTACATATAAATTGCTGTGTACTGTCGATTTTTGTAT  400

seq1  AGTGAAATACATTTCAAGGTCAAACATCGTGATTTTAAAAACAGACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATACATTTCAAGGTCAAACATCGTGATTTTAAAAACAGACAGAA  450

seq1  AACAATTATATTTGACAAACAATTTTTACGTGACCTGAAAATGTCTTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATATTTGACAAACAATTTTTACGTGACCTGAAAATGTCTTACG  500

seq1  ATGAAAAAAAAAAATCCTTTCATACTCTGATTTTCTTAGACGTGTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAAAAATCCTTTCATACTCTGATTTTCTTAGACGTGTTTTTG  550

seq1  TAGTGAAAACTTGTGGAATCCTTTCCCTTCACTTTACAGGCTGCTGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAACTTGTGGAATCCTTTCCCTTCACTTTACAGGCTGCTGGAAC  600

seq1  AAGTTAGCAAAGTTTCAATACAGGTTTTGAATTTTACCTTTCTTTGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGCAAAGTTTCAATACAGGTTTTGAATTTTACCTTTCTTTGCTAA  650

seq1  ATAGCGTAAGGTTTCCCATAGGAATCACCAAGTACATATTAGTGTGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGTAAGGTTTCCCATAGGAATCACCAAGTACATATTAGTGTGGTTA  700

seq1  CAACTAATACTGCAATCATTTACGCAATTACAGTGAATACCCAGGAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATACTGCAATCATTTACGCAATTACAGTGAATACCCAGGAGATG  750

seq1  GGAGCGCCTTCAGCTCTAGCAGGAGTACAGATTTAGCGCTGAAAACACTT  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGCGCCTTCAGCTCTAGCA-GAGTACAGATTTAGCGCTGAAAACACTT  799

seq1  GACAGAACTGTAAAGCTACATCTAGTGTTGAAAATACCTTTTGTTGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACTGTAAAGCTACATCTAGTGTTGAAAATACCTTTTGTTGAGTT  849

seq1  TAGATATATAAACTCCCTCTCCTAACAAGATCCATTGTGTTCTCCGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATAAACTCCCTCTCCTAACAAGATCCATTGTGTTCTCCGGGTC  899

seq1  ACACTAAGTATTTGGAAACTTTAATGACATTAAGAGGCCACATTGAAGAG  950
      ||||||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  ACACTAAGTATTTGGAAACTTTAATGACATT-AGA-GCCACATTGAAGAG  947

seq1  TAACTACCCCCACATTTCAGGAATTTCTTTAAGTTTGGGTTTGCCTACAT  1000
      | ||||||||||||||||||    |||||  |||||||||||||||||||
seq2  T-ACTACCCCCACATTTCAG---ATTCTT--AGTTTGGGTTTGCCTACAT  991

seq1  ATCGTTTATAAATCTTTATTTTAAAAAAAAATGAAAATAGATTCTTTTCT  1050
      |||| |||| |||||||||||   |||||||||||||||||||| |||||
seq2  ATCG-TTAT-AATCTTTATTT---AAAAAAATGAAAATAGATTC-TTTCT  1035

seq1  CATACACTAGAGGCCAACCACAGTTTCCTCTCCATCCTCTCCTCCTAGGG  1100
      ||||||||||||  ||  ||||||||||||| ||||||||||||||| ||
seq2  CATACACTAGAG--CA--CACAGTTTCCTCT-CATCCTCTCCTCCTAAGG  1080

seq1  GCCCCTCCCCACACTCCTCTTTCCCCAAGATATATACTCCCCCCCCCCCC  1150
      | |||| |||||||||  |||||||  ||| ||  |||  ||||||||||
seq2  GACCCTTCCCACACTC--CTTTCCC--AGA-ATTAACT-TCCCCCCCCCC  1124

seq1  GACCCCCACATTTCCTCTTCAGAAAAG  1177
      ||||    || || |||||||||||||
seq2  GACC----CAATT-CTCTTCAGAAAAG  1146

seq1: chr16_70837147_70838250
seq2: B6Ng01-143F07.g_68_1146 (reverse)

seq1  AATAATGTAAGTACTAAATGCTCCAGATGGTACCACAGATGCAGAAAGGT  50
      ||||| ||||||||| |||| ||||||| ||||||||||||||||     
seq2  AATAA-GTAAGTACT-AATG-TCCAGAT-GTACCACAGATGCAGA-----  41

seq1  TAGGAGATGTAATCAATTGTCATACCAGAGAGGCATTCAGTGTGATTTCG  100
       || |||  | ||| ||||||||  |||||||||| ||||||||| ||||
seq2  -AGTAGAGATTATC-ATTGTCAT--CAGAGAGGCA-TCAGTGTGA-TTCG  85

seq1  AGTTTATTGTGAGTCCCTCCTGACTGAATTAGAATGTCATGTTCTGTGAC  150
      || ||||||||||| ||||||||||||  |||||||||||| ||||||||
seq2  AG-TTATTGTGAGT-CCTCCTGACTGA--TAGAATGTCATG-TCTGTGAC  130

seq1  AGGATAGTAGTAGATTAGGTGCCTGCACTTCACTGCTGTCCGGGATAAAA  200
      | ||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  A-GATAGTAGTAGATTAGGTG-CTGCAC-TCACTGCTGTCCGGGATAAAA  177

seq1  AAGGGGGAGAAATGCAGTGTGAACTGCCTCTCTCAGTGCCTGTGCTTGTC  250
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AA-GGGGAGAAATGCAGTGTGAACTG-CTCTCTCAGTGCCTGTGCTTGTC  225

seq1  TAATAATGTGTGCTCTCCTTAAATCACAGTTCAAAGTCTTGACGATCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGTGTGCTCTCCTTAAATCACAGTTCAAAGTCTTGACGATCATG  275

seq1  TCTCGATATCTGTTCTGTGAGCTGAGGAAATGAATCACAATATTATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGATATCTGTTCTGTGAGCTGAGGAAATGAATCACAATATTATCAGA  325

seq1  AAATGCCAGAAAGCCCTGTGCACGGAACACACTGAAGAGTGGGTGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAGAAAGCCCTGTGCACGGAACACACTGAAGAGTGGGTGAAGTT  375

seq1  TCCAATTCTGAAGGAGCCAGCTTAAAGTTGCCTTCAGTTTATGCAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCTGAAGGAGCCAGCTTAAAGTTGCCTTCAGTTTATGCAGGAAA  425

seq1  AATAGTAAGCAGAAACAGAGCTGGGAAACAGGGCTATAGATGTTCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAGCAGAAACAGAGCTGGGAAACAGGGCTATAGATGTTCTTTCT  475

seq1  GTAATATGGGCTTACTTCTGGAAATTTGACAAATTCTAACTTGAGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGGGCTTACTTCTGGAAATTTGACAAATTCTAACTTGAGAAAAG  525

seq1  TTGGTTTACAACGCTTTCCCCACACAGGTGAGAAAGATTAATGCGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTACAACGCTTTCCCCACACAGGTGAGAAAGATTAATGCGTTATT  575

seq1  TAGTTGGGCAAAGTTTTAAAGCATATATGCTTTTTGAAAATGATTAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGGCAAAGTTTTAAAGCATATATGCTTTTTGAAAATGATTAATCC  625

seq1  TTTAACAAGTCTAGGTTAGGAAAATCCATTTTAACAATTACACTTTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAGTCTAGGTTAGGAAAATCCATTTTAACAATTACACTTTTGAC  675

seq1  CTGAAACATGGTTGCCCACCATAGTGTGGCTGATTGACTCTTTCAGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATGGTTGCCCACCATAGTGTGGCTGATTGACTCTTTCAGTAGC  725

seq1  ACTTAAAAATTCTGGAAGAAAATGTTTTGAAAGGGAACATATATTAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAATTCTGGAAGAAAATGTTTTGAAAGGGAACATATATTAGGTT  775

seq1  TTTTTTTTTTTTTTGAAAGATAAGTATAAAAAAAAAGGTAAGCCTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAAAGATAAGTATAAAAAAAAAGGTAAGCCTGATTT  825

seq1  GAAATTGGTTTTATAAAGTATTTCACTTGACATCACAGTGTGGTAATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGTTTTATAAAGTATTTCACTTGACATCACAGTGTGGTAATTGG  875

seq1  AAGTTAAATTGTGGAGTAGAAATACTATCAGACTTCAAGATGGGACTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATTGTGGAGTAGAAATACTATCAGACTTCAAGATGGGACTTGT  925

seq1  GGGCCACCAGAGAAATTGAACTCAAGTAGAATGTTCAAATTTGATGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACCAGAGAAATTGAACTCAAGTAGAATGTTCAAATTTGATGAATT  975

seq1  TTTGCAACTTTTACATCCCACCTAAGTGACTGTGTAGGGAAAAAATAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACTTTTACATCCCACCTAAGTGACTGTGTAGGGAAAAAATAAGT  1025

seq1  AGTTGTTTTCCTAGCAGTGTGTTAGCTGGTGTTCACTAATCAGTCATGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTTCCTAGCAGTGTGTTAGCTGGTGTTCACTAATCAGTCATGGA  1075

seq1  ATTC  1104
      ||||
seq2  ATTC  1079