BAC Information

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BAC

Clone NameB6Ng01-143K18
Chromosome16 (Build37)
Map Location 25,719,178 - 25,891,333
singlet/doubletdoublet
Overlap geneTrp63
Upstream geneLpp, 5430420C16Rik
Downstream geneLOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143K18.bB6Ng01-143K18.g
ACCDH941547DH941548
length1,0371,019
definitionDH941547|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K18, 5' end.DH941548|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,890,280 - 25,891,333)(25,719,178 - 25,720,217)
sequence
gaattctcactaaacggtgtttctgcaaaaatataaaaatagcaacaaaa
aaagtttcatctgtggttctggaaaacccaactatcccaaagagaaagcc
ataacaaacaaaaccagcatagtaagcaatttcacacacacgcatataca
caagatatgattttctggcaaaactcatacattacacgtcaaaggcctat
tagcccatttgcactttaaaataaaaaatgggagctcatgtgcaatgaaa
gtcatttaacaaaatgtgtgggaagattgtagagctcattagcatacaaa
caacacttggtttaggcaggaaaaaaaatatacttgtctcaaaatgtttc
caaaatatctaaggggaatactgttgcatgctttcccaaggtatgaaaca
agtctttctggatatggattaaacaggtgaaaaggtttgtcgtgggtttg
tagacaggtcttggtctacactagcttggaaagtgtcaggcggaaaactg
ggtcttcacctctgctttctaaaacaatgaagctttgatgatcaagagga
agataacagtggttcagctcatgctatgtgaaaactacactacgaagttt
gtattttccaagccattattcttattttagcccttggggagagagaaact
tgcctgtgcatgcagtgtctcatagataggaaagtctttaaaaggtccac
ttcccaagcatcactccacccttcaaaaggaacttcaattcagagtttgg
tgggatgaatcgctttctgttttccttttcatggaaattcagtatttctg
aatcattcttatttttcctgaatctttctaatagacattacactccccat
gaaactagacgatttcattcattctattgggccaattctcacaacagcag
agattttctattttacttagtcatctagcagagaatttatttttagacta
ttctacacagcaaatgtttatttttctataatactaggtgttgggctatt
tcaagagctactgctattggctatttcatcaagattt
gaattctttttaagcagtacatatttctatgtccccctttccactcttcc
tctctccctctctctccccttccctacttctctccttccctcctttccac
cctttcttcatcagatgctggtattttgtttgattccttatgtggcatca
ggttttaggatggtttatgatccctggaacttttactgatggatacactg
ttacatacataagacccccttatgtataaagtttgtggactttaccattc
agtctacctaggaactgtaagtaggcacccacaattctgtgttgagcttg
ttactggaatctttaggagtggtgcttgatgcttgtttgatgaaatgact
aggcttgcttttataccacaggcattttcctggggtctgacttttcagtg
gcagaactagaaggcttggaccccacagagagacctcttagtgctatgaa
atgactggtctggagctttggtccactggagtggactggtgatatctgcg
aagatgtacccatggcctatgtgctgatgctataatgaggcatgagacta
agggcattcagcataacttgtatagccaacatagtacgaagtttgtattg
gagcctctctttcaagatcccatgttctaagatcccggaactatgcagtg
ctaggatgtgttagggtcggtctggcacttgggtccccaaacaagctgag
gattccctgtcccttaatatgcatggtataactttccacagtgccttcca
gtgcctgacagtaggtgacgctggaattgtgaaactcccttctgagctct
caatgcattgttctagccttagtgcttcatctagcagctatactctctca
cctgcatccttttctccttggaaatgcttttctgtgtgaatagctgtttg
catgtgagaaggtatacctgactcccctatgttggcactttgctgatgtt
atgcccatatatgatttaaagcttgtataggtaggaaatctaatatttgt
tatatggcattcacttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25890280_25891333
seq2: B6Ng01-143K18.b_46_1076 (reverse)

seq1  TGATGAAATTTAGCCCAATATAGCAGTAGCTCTTTGAAATTTAAGGCCCA  50
      ||||||||  |||||    ||||||||||||| |||||||     |||||
seq2  TGATGAAA--TAGCC---AATAGCAGTAGCTC-TTGAAAT----AGCCCA  40

seq1  ACACCCTAGTATTTATTAGAAAAATAAACATTTGCTGTTGTTAGAATAGT  100
      ||| |||||||||   ||||||||||||||||||||||   |||||||||
seq2  ACA-CCTAGTATT--ATAGAAAAATAAACATTTGCTGT--GTAGAATAGT  85

seq1  CTTAAAAATAAATTTCTCTGCTAGATTGACTAAGTAAAATAGACATTCTC  150
      | |||||||||| |||||||||||| ||||||||||||||||| | ||||
seq2  C-TAAAAATAAA-TTCTCTGCTAGA-TGACTAAGTAAAATAGAAAATCTC  132

seq1  TGCTGTTGTGAGAATTTGGGCCAATTAGAATGAATGAAATTCGTCTAGTT  200
      ||||||||||||||||  |||| | |||||||||||||| |||||||| |
seq2  TGCTGTTGTGAGAATT--GGCCCAATAGAATGAATGAAA-TCGTCTAG-T  178

seq1  TTCATGGGGAGTTGTAATGTCTATTAGAAAGATTCAGGAAAAATAAGAAT  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGGAG-TGTAATGTCTATTAGAAAGATTCAGGAAAAATAAGAAT  227

seq1  GATTCAGAAATACTGAATTTCCATGAAAAGGAAAACAGAAAGCGATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAAATACTGAATTTCCATGAAAAGGAAAACAGAAAGCGATTCAT  277

seq1  CCCACCAAACTCTGAATTGAAGTTCCTTTTGAAGGGTGGAGTGATGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAAACTCTGAATTGAAGTTCCTTTTGAAGGGTGGAGTGATGCTTG  327

seq1  GGAAGTGGACCTTTTAAAGACTTTCCTATCTATGAGACACTGCATGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGACCTTTTAAAGACTTTCCTATCTATGAGACACTGCATGCACA  377

seq1  GGCAAGTTTCTCTCTCCCCAAGGGCTAAAATAAGAATAATGGCTTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTTCTCTCTCCCCAAGGGCTAAAATAAGAATAATGGCTTGGAAA  427

seq1  ATACAAACTTCGTAGTGTAGTTTTCACATAGCATGAGCTGAACCACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACTTCGTAGTGTAGTTTTCACATAGCATGAGCTGAACCACTGTT  477

seq1  ATCTTCCTCTTGATCATCAAAGCTTCATTGTTTTAGAAAGCAGAGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTTGATCATCAAAGCTTCATTGTTTTAGAAAGCAGAGGTGAA  527

seq1  GACCCAGTTTTCCGCCTGACACTTTCCAAGCTAGTGTAGACCAAGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTTTTCCGCCTGACACTTTCCAAGCTAGTGTAGACCAAGACCTG  577

seq1  TCTACAAACCCACGACAAACCTTTTCACCTGTTTAATCCATATCCAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAACCCACGACAAACCTTTTCACCTGTTTAATCCATATCCAGAAA  627

seq1  GACTTGTTTCATACCTTGGGAAAGCATGCAACAGTATTCCCCTTAGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTTCATACCTTGGGAAAGCATGCAACAGTATTCCCCTTAGATAT  677

seq1  TTTGGAAACATTTTGAGACAAGTATATTTTTTTTCCTGCCTAAACCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAACATTTTGAGACAAGTATATTTTTTTTCCTGCCTAAACCAAGT  727

seq1  GTTGTTTGTATGCTAATGAGCTCTACAATCTTCCCACACATTTTGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTATGCTAATGAGCTCTACAATCTTCCCACACATTTTGTTAAA  777

seq1  TGACTTTCATTGCACATGAGCTCCCATTTTTTATTTTAAAGTGCAAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCATTGCACATGAGCTCCCATTTTTTATTTTAAAGTGCAAATGG  827

seq1  GCTAATAGGCCTTTGACGTGTAATGTATGAGTTTTGCCAGAAAATCATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAGGCCTTTGACGTGTAATGTATGAGTTTTGCCAGAAAATCATAT  877

seq1  CTTGTGTATATGCGTGTGTGTGAAATTGCTTACTATGCTGGTTTTGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATATGCGTGTGTGTGAAATTGCTTACTATGCTGGTTTTGTTTG  927

seq1  TTATGGCTTTCTCTTTGGGATAGTTGGGTTTTCCAGAACCACAGATGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTTTCTCTTTGGGATAGTTGGGTTTTCCAGAACCACAGATGAAA  977

seq1  CTTTTTTTGTTGCTATTTTTATATTTTTGCAGAAACACCGTTTAGTGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGTTGCTATTTTTATATTTTTGCAGAAACACCGTTTAGTGAGA  1027

seq1  ATTC  1054
      ||||
seq2  ATTC  1031

seq1: chr16_25719178_25720217
seq2: B6Ng01-143K18.g_68_1086

seq1  GAATTCTTTTTAAGCAGTACATATTTCTATGTCCCCCTTTCCACTCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAAGCAGTACATATTTCTATGTCCCCCTTTCCACTCTTCC  50

seq1  TCTCTCCCTCTCTCTCCCCTTCCCTACTTCTCTCCTTCCCTCCTTTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCTCTCTCCCCTTCCCTACTTCTCTCCTTCCCTCCTTTCCAC  100

seq1  CCTTTCTTCATCAGATGCTGGTATTTTGTTTGATTCCTTATGTGGCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCATCAGATGCTGGTATTTTGTTTGATTCCTTATGTGGCATCA  150

seq1  GGTTTTAGGATGGTTTATGATCCCTGGAACTTTTACTGATGGATACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGGATGGTTTATGATCCCTGGAACTTTTACTGATGGATACACTG  200

seq1  TTACATACATAAGACCCCCTTATGTATAAAGTTTGTGGACTTTACCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACATAAGACCCCCTTATGTATAAAGTTTGTGGACTTTACCATTC  250

seq1  AGTCTACCTAGGAACTGTAAGTAGGCACCCACAATTCTGTGTTGAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCTAGGAACTGTAAGTAGGCACCCACAATTCTGTGTTGAGCTTG  300

seq1  TTACTGGAATCTTTAGGAGTGGTGCTTGATGCTTGTTTGATGAAATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGAATCTTTAGGAGTGGTGCTTGATGCTTGTTTGATGAAATGACT  350

seq1  AGGCTTGCTTTTATACCACAGGCATTTTCCTGGGGTCTGACTTTTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCTTTTATACCACAGGCATTTTCCTGGGGTCTGACTTTTCAGTG  400

seq1  GCAGAACTAGAAGGCTTGGACCCCACAGAGAGACCTCTTAGTGCTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTAGAAGGCTTGGACCCCACAGAGAGACCTCTTAGTGCTATGAA  450

seq1  ATGACTGGTCTGGAGCTTTGGTCCACTGGAGTGGACTGGTGATATCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGTCTGGAGCTTTGGTCCACTGGAGTGGACTGGTGATATCTGCG  500

seq1  AAGATGTACCCATGGCCTATGTGCTGATGCTATAATGAGGCATGAGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTACCCATGGCCTATGTGCTGATGCTATAATGAGGCATGAGACTA  550

seq1  AGGGCATTCAGCATAACTTGTATAGCCAACATAGTACGAAGTTTGTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTCAGCATAACTTGTATAGCCAACATAGTACGAAGTTTGTATTG  600

seq1  GAGCCTCTCTTTCAAGATCCCATGTTCTAAGATCCCGGAACTATGCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCTTTCAAGATCCCATGTTCTAAGATCCCGGAACTATGCAGTG  650

seq1  CTAGGATGTGTTAGGGTCGGTCTGGCACTTGGGTCCCCAAACAAGCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGTGTTAGGGTCGGTCTGGCACTTGGGTCCCCAAACAAGCTGAG  700

seq1  GATTCCCTGTCCCTTAATATGCATGGTATAACTTTCCACAGTGGCCTTCC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATTCCCTGTCCCTTAATATGCATGGTATAACTTTCCACAGT-GCCTTCC  749

seq1  AGTGCCTGACAAGTAGGTGACGCTGGAATTGTGAAACTTCCCTTCTGAGC  800
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AGTGCCTGAC-AGTAGGTGACGCTGGAATTGTGAAAC-TCCCTTCTGAGC  797

seq1  TCTCAAATGCATTGTTCTAGCCTTAGTGCTTCATCTAGCAGCTATACTCT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTC-AATGCATTGTTCTAGCCTTAGTGCTTCATCTAGCAGCTATACTCT  846

seq1  CTCACCTGCATCCTTTTCTCCCTTGGAAAATGCTTTTCTGTGTGAATAGC  900
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  CTCACCTGCATCCTTTTCT-CCTTGG-AAATGCTTTTCTGTGTGAATAGC  894

seq1  TGTTTGCATTGTGAGAAGGTAATACCTGGACTCCCCTATGTTGGCACTTT  950
      |||||||| ||||||||||| |||||| ||||||||||||||||||||||
seq2  TGTTTGCA-TGTGAGAAGGT-ATACCT-GACTCCCCTATGTTGGCACTTT  941

seq1  GCTGATGTTATGCCCATTAATATGAATTTTAAAGCTTGTAATTAGGTAGG  1000
      |||||||||||||||||  ||||||  |||||||||||||  ||||||||
seq2  GCTGATGTTATGCCCAT--ATATGA--TTTAAAGCTTGTA--TAGGTAGG  985

seq1  AAAATACTAAATATTTGTATATTAATAGCATTCACATATA  1040
      |||   || ||||||||| |||  || |||||||| ||||
seq2  AAA--TCT-AATATTTGT-TAT--ATGGCATTCACTTATA  1019