BAC Information

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BAC

Clone NameB6Ng01-143N17
Chromosome16 (Build37)
Map Location 40,094,613 - 40,210,026
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143N17.bB6Ng01-143N17.g
ACCDH941685DH941686
length906976
definitionDH941685|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N17, 5' end.DH941686|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,209,336 - 40,210,026)(40,094,613 - 40,095,591)
sequence
gaattcaaacatgctgagaaacagaattaattctgagtgtaggattgcaa
caaaaaagattgtaaaaaaaatcagagtaaaaaagaaacaaaatggatga
aaaggcagtaacttaaataaagaacaaatagagaaaaacctgtaaaattc
agaaaaaaaaagaacaagaaaaattcagcaaggatatcaaagaacaaatg
aaatattggtaatgcaaagcgctcaaggaaccagaaaaaaaactgacagg
gaaaggagtatcaatagattgtataaaatagatggaagtaggtaaatgca
aggatttttatcaaaaaacacacaagcaaacaaaataaacaaataaaaaa
cacagtcaaaattctgacccatagttgttcctgtctgaaagaactgtaag
gatgaaaatgaagaagagcctgagaaaaagaaggtccagttacaggtcca
aagtggactctatcttaagggaagaacccaaggcctaaaactattactga
ggctacggagcactcacaaaaaggtacctatgatgactgccctccaaaag
acccaataagcagctgaaagagtcagatgcagatatttgtactcagccaa
tggacagaacctgatgatacctgtggttgaattatggaaaagctggaaga
agctgagaagaatagcaaccctgtaggaaaaccagcagtctcaactaaca
tgaaactctgagatctctcatatgctctatcagaaccagaaagcatacag
cagcttatacaagatccccccaatacatatacagtagaggactgctgggt
ctgggtcagtcagagaagatgcacctaactctcaagagcctggaggccta
ggtagtttagaggtcttgtggggtgtgtgtggggacatcctcatggagac
agaagg
gaattcttccctctgttgagagctgtgaatacctcacacgtctcagacag
aatggaacatatttttgctgtcagcagacagatgttcagagcatgaaagc
ccacctgaaagaggtaggatgcgtcaccatccatctggctccagaaatga
ccagccagaaacaaccatccactaaataatttgcttccttttggaaaatg
ctcattccaactgggacttagaaggcttaattctattatttctgttgatg
agttttgctctctgacataatacaatgtgcagcatctctgggctggaagt
ttaaatccctggtaaggggtatgtatgatgtgaaacaaatgtgcttctga
gaggaaggattcttactctttgtcagttaagttaccttgagtgtaacatg
agtggatatgagcctgaacactatgtgtatgaataaaccatgcacctgct
gtaaaactatgaggcttaatgtaattattgctcaaaggaaataggatata
ctcaccccagagccaaatatgaatgaccatgattcaggaacacaggctca
agttgccctggatgccattttctgttttaaatgttaagtaattaagtttt
tatagagaccaaataaaaaatatcataaagccacacacatttactgacac
agttgtgagactgtgtccacaggtggtcagactacaacaacccatggaga
tcccttgtataggttttctgtgttgtctgctgataatattggtttttttt
ttttgatggtgtaagataattgtttgctaattttaataaattgcaaagga
tttgcttaatagacacaaggctgttagtcagccaaatggatgagtgtaaa
tgtcatttcaaatagtaaatatatctataggcattggaggtcttatctat
acatatatctcacatcatgggagtctgatgtgtttatcagtcttaacatg
gatgagctttcttcagaacttcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40209336_40210026
seq2: B6Ng01-143N17.b_47_737 (reverse)

seq1  AGACTGCTGGTTTTCCTACAGGGTTGCTATTCTTCTCAGCTTCTTCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTGGTTTTCCTACAGGGTTGCTATTCTTCTCAGCTTCTTCCAGC  50

seq1  TTTTCCATAATTCAACCACAGGTATCATCAGGTTCTGTCCATTGGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATAATTCAACCACAGGTATCATCAGGTTCTGTCCATTGGCTGAG  100

seq1  TACAAATATCTGCATCTGACTCTTTCAGCTGCTTATTGGGTCTTTTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATCTGCATCTGACTCTTTCAGCTGCTTATTGGGTCTTTTGGAG  150

seq1  GGCAGTCATCATAGGTACCTTTTTGTGAGTGCTCCGTAGCCTCAGTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCATCATAGGTACCTTTTTGTGAGTGCTCCGTAGCCTCAGTAATA  200

seq1  GTTTTAGGCCTTGGGTTCTTCCCTTAAGATAGAGTCCACTTTGGACCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGCCTTGGGTTCTTCCCTTAAGATAGAGTCCACTTTGGACCTGT  250

seq1  AACTGGACCTTCTTTTTCTCAGGCTCTTCTTCATTTTCATCCTTACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACCTTCTTTTTCTCAGGCTCTTCTTCATTTTCATCCTTACAGTT  300

seq1  CTTTCAGACAGGAACAACTATGGGTCAGAATTTTGACTGTGTTTTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGACAGGAACAACTATGGGTCAGAATTTTGACTGTGTTTTTTATT  350

seq1  TGTTTATTTTGTTTGCTTGTGTGTTTTTTGATAAAAATCCTTGCATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTTGTTTGCTTGTGTGTTTTTTGATAAAAATCCTTGCATTTAC  400

seq1  CTACTTCCATCTATTTTATACAATCTATTGATACTCCTTTCCCTGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCATCTATTTTATACAATCTATTGATACTCCTTTCCCTGTCAGT  450

seq1  TTTTTTTCTGGTTCCTTGAGCGCTTTGCATTACCAATATTTCATTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGGTTCCTTGAGCGCTTTGCATTACCAATATTTCATTTGTTC  500

seq1  TTTGATATCCTTGCTGAATTTTTCTTGTTCTTTTTTTTTCTGAATTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATCCTTGCTGAATTTTTCTTGTTCTTTTTTTTTCTGAATTTTAC  550

seq1  AGGTTTTTCTCTATTTGTTCTTTATTTAAGTTACTGCCTTTTCATCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTCTCTATTTGTTCTTTATTTAAGTTACTGCCTTTTCATCCATT  600

seq1  TTGTTTCTTTTTTACTCTGATTTTTTTTACAATCTTTTTTGTTGCAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTTTTTACTCTGATTTTTTTTACAATCTTTTTTGTTGCAATCC  650

seq1  TACACTCAGAATTAATTCTGTTTCTCAGCATGTTTGAATTC  691
      |||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCAGAATTAATTCTGTTTCTCAGCATGTTTGAATTC  691

seq1: chr16_40094613_40095591
seq2: B6Ng01-143N17.g_68_1033

seq1  GAATTCTTCCCTCTGTTGAGAGCTGTGAATACCTCACACGTCTCAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTCTGTTGAGAGCTGTGAATACCTCACACGTCTCAGACAG  50

seq1  AATGGAACATATTTTTGCTGTCAGCAGACAGATGTTCAGAGCATGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACATATTTTTGCTGTCAGCAGACAGATGTTCAGAGCATGAAAGC  100

seq1  CCACCTGAAAGAGGTAGGATGCGTCACCATCCATCTGGCTCCAGAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAAAGAGGTAGGATGCGTCACCATCCATCTGGCTCCAGAAATGA  150

seq1  CCAGCCAGAAACAACCATCCACTAAATAATTTGCTTCCTTTTGGAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGAAACAACCATCCACTAAATAATTTGCTTCCTTTTGGAAAATG  200

seq1  CTCATTCCAACTGGGACTTAGAAGGCTTAATTCTATTATTTCTGTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCAACTGGGACTTAGAAGGCTTAATTCTATTATTTCTGTTGATG  250

seq1  AGTTTTGCTCTCTGACATAATACAATGTGCAGCATCTCTGGGCTGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTCTCTGACATAATACAATGTGCAGCATCTCTGGGCTGGAAGT  300

seq1  TTAAATCCCTGGTAAGGGGTATGTATGATGTGAAACAAATGTGCTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCCTGGTAAGGGGTATGTATGATGTGAAACAAATGTGCTTCTGA  350

seq1  GAGGAAGGATTCTTACTCTTTGTCAGTTAAGTTACCTTGAGTGTAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGATTCTTACTCTTTGTCAGTTAAGTTACCTTGAGTGTAACATG  400

seq1  AGTGGATATGAGCCTGAACACTATGTGTATGAATAAACCATGCACCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATATGAGCCTGAACACTATGTGTATGAATAAACCATGCACCTGCT  450

seq1  GTAAAACTATGAGGCTTAATGTAATTATTGCTCAAAGGAAATAGGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTATGAGGCTTAATGTAATTATTGCTCAAAGGAAATAGGATATA  500

seq1  CTCACCCCAGAGCCAAATATGAATGACCATGATTCAGGAACACAGGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCAGAGCCAAATATGAATGACCATGATTCAGGAACACAGGCTCA  550

seq1  AGTTGCCCTGGATGCCATTTTCTGTTTTAAATGTTAAGTAATTAAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCCTGGATGCCATTTTCTGTTTTAAATGTTAAGTAATTAAGTTTT  600

seq1  TATAGAGACCAAATAAAAAATATCATAAAGCCACACACATTTACTGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACCAAATAAAAAATATCATAAAGCCACACACATTTACTGACAC  650

seq1  AGTTGTGAGACTGTGTCCACAGGTGGTCAGACTACAACAACCCATGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGACTGTGTCCACAGGTGGTCAGACTACAACAACCCATGGAGA  700

seq1  TCCCTTGTATAGGTTTTCTGTGTTGTCTGCTGATAATATTGGTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTATAGGTTTTCTGTGTTGTCTGCTGATAATATTGGTTTTTTTT  750

seq1  TTTTGATGGTGTAAGATAATTGTTTGCTAATTTTAATAAATTGCAAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGGTGTAAGATAATTGTTTGCTAATTTTAATAAATTGCAAAGGA  800

seq1  TTTGCTTAATAGACACAAGGCTGTTAAGTCAGCCAAATGGATGAGTGGTA  850
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  TTTGCTTAATAGACACAAGGCTGTT-AGTCAGCCAAATGGATGAGT-GTA  848

seq1  AATGTCATTTCAAATAAGTAAATATATCTATAGGCATTGGAGGTCTTAAT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AATGTCATTTCAAAT-AGTAAATATATCTATAGGCATTGGAGGTCTT-AT  896

seq1  CTATAACATTATATTCTTCCACAATCATGGGAGTCTGATGTGTTTATCAG  950
      |||| ||| |||| |||  ||| |||||||||||||||||||||||||||
seq2  CTAT-ACA-TATA-TCT--CAC-ATCATGGGAGTCTGATGTGTTTATCAG  940

seq1  TCTTTAACATGGATGAAGCCTTTCTTCAG  979
      || |||||||||||||   ||||||||||
seq2  TC-TTAACATGGATGA--GCTTTCTTCAG  966