BAC Information

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BAC

Clone NameB6Ng01-144F12
Chromosome16 (Build37)
Map Location 79,702,681 - 79,861,619
singlet/doubletdoublet
Overlap genenone
Upstream gene4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik, LOC621365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144F12.bB6Ng01-144F12.g
ACCDH942047DH942048
length1,173328
definitionDH942047|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F12, 5' end.DH942048|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,860,414 - 79,861,619)(79,702,681 - 79,703,007)
sequence
gaattcactttcatcatgctctgggcttgtttttacttcgtgctgtgcgc
atcaagtcaatcacagattctgaaggcttcacttgccagtacgccattgt
tgtctaagggtacctattgaatttctgacagagttaatatgaaagctctc
cctccttatgtcctaggatgaaaacagaaatgtctaatgcatctgaagca
cttttgattgctttcaaagtgttttgctatcacaacttcctgagtcaaac
tattaaatattctttccaatgcttagctcctattgttaacactatttggg
gcattatcacagctttgctgtcttgctcttcatgagcatttacagttgaa
atatactaaacagacatgctaatgctttagcatgttatgcagcttttgct
ggttaggtcctcttcaggctcctaacattgtgcttgtcacccgagtgcgt
gacatgttttattaaatacagttgggctatgtattgctcaaccagattaa
aaacaaacctcctccaaggaatttttaaaagaagtaatagacagaatcaa
actctattcttgttttcgctgtaatgacaagaattctgtttctttccccc
tgcatgctcttgaagaaagttacaggttcaccctacaaaagccaaaagat
tggtatccattgctaagccagacagactattcttatgtatttctctgaat
tctgacttcctcataatgtgactgtagagtcccaccttagattggtatct
aagacccttaggatgtgacttaacatttaaatatatgtaacttctgtgaa
gaaactacccttcaagactgaactggaattttccttctctatctgagagt
aacaacaaccaaaatcatgttctagcacacagatgattctctacatgctc
ctgagttttagcctaggtccctgcatctgacactactttacagaagccaa
acaaagcagaaccttaatgaataaagtaagtcactagtaaatgctcttga
tgatcttctaaatccttctgacatctcctggtcacctacgtcatcatggt
gacctctctacgaacccaccacatcctcctacacagattgcttgcatcag
tcgaagcatgtagtaggacgtagccaactcttgtgaacaaggcaagaagc
ctcctcttagcatgtcaattttt
ctataattcttaattagaaaaaaatcagaaggataatgaagtgatcccct
tttaaagaagtagcttcttgaaaatatttactagcctacaaaaaattagg
tttaactataatgatttttaaatcaaataattctgtttgtttgtttgttt
gttttggttttggttttggtttttgtttgtttgttttttgttgttgttgt
ttttttttcaatacagggtttctctgtgtatccctggctgtcctggaact
cactttgtagactagtctggcctggaactcagaaatatgcctgcctctgc
ctctgccttccaagtgctgggattaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79860414_79861619
seq2: B6Ng01-144F12.b_45_1217 (reverse)

seq1  AAAAATGTGACATGGCTTAAGAAGGAGGCTTCTTTGCACTTGGTTTCAC-  49
      |||||| |||||||   |||| |||||||||| |||| ||||  ||||| 
seq2  AAAAAT-TGACATG--CTAAG-AGGAGGCTTC-TTGC-CTTG--TTCACA  42

seq1  AGAGTTTGGCTTACGGTCCCTTACTACATTGCTTCTGTACTGATGCAAAG  99
      |||| ||||| ||| ||||  ||||||| ||||||   ||||||||||  
seq2  AGAG-TTGGC-TAC-GTCC--TACTACA-TGCTTC--GACTGATGCAA--  82

seq1  GCAAATTCTGTGGTAGGAAGGATGTGGTGGGTTTCGTAGAGAGGTTCAAC  149
      ||||  ||||| ||||| ||||||||||||| |||||||||||| |||  
seq2  GCAA--TCTGT-GTAGG-AGGATGTGGTGGG-TTCGTAGAGAGG-TCA--  124

seq1  TCATGATGGACGGTAGGTGGACCAGGAGGATGTCCAGAAGGATTTTAAGA  199
       |||||| ||| |||||| |||||||| ||||| |||||||||||  |||
seq2  CCATGAT-GAC-GTAGGT-GACCAGGA-GATGT-CAGAAGGATTT--AGA  167

seq1  AGATCATCAAGAGCATTTACTTAGTGACTTACTTTATTCATTAAGGTTCT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATCATCAAGAGCATTTAC-TAGTGACTTACTTTATTCATTAAGGTTCT  216

seq1  GCTTTGTTTGGCTTCTGTAAAGTAGTGTCAGATGCAGGGACCTAGGCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTGGCTTCTGTAAAGTAGTGTCAGATGCAGGGACCTAGGCTAA  266

seq1  AACTCAGGAGCATGTAGAGAATCATCTGTGTGCTAGAACATGATTTTGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGAGCATGTAGAGAATCATCTGTGTGCTAGAACATGATTTTGGT  316

seq1  TGTTGTTACTCTCAGATAGAGAAGGAAAATTCCAGTTCAGTCTTGAAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTACTCTCAGATAGAGAAGGAAAATTCCAGTTCAGTCTTGAAGGG  366

seq1  TAGTTTCTTCACAGAAGTTACATATATTTAAATGTTAAGTCACATCCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTCACAGAAGTTACATATATTTAAATGTTAAGTCACATCCTAA  416

seq1  GGGTCTTAGATACCAATCTAAGGTGGGACTCTACAGTCACATTATGAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTAGATACCAATCTAAGGTGGGACTCTACAGTCACATTATGAGGA  466

seq1  AGTCAGAATTCAGAGAAATACATAAGAATAGTCTGTCTGGCTTAGCAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATTCAGAGAAATACATAAGAATAGTCTGTCTGGCTTAGCAATG  516

seq1  GATACCAATCTTTTGGCTTTTGTAGGGTGAACCTGTAACTTTCTTCAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAATCTTTTGGCTTTTGTAGGGTGAACCTGTAACTTTCTTCAAGA  566

seq1  GCATGCAGGGGGAAAGAAACAGAATTCTTGTCATTACAGCGAAAACAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGGGGGAAAGAAACAGAATTCTTGTCATTACAGCGAAAACAAGA  616

seq1  ATAGAGTTTGATTCTGTCTATTACTTCTTTTAAAAATTCCTTGGAGGAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTTGATTCTGTCTATTACTTCTTTTAAAAATTCCTTGGAGGAGG  666

seq1  TTTGTTTTTAATCTGGTTGAGCAATACATAGCCCAACTGTATTTAATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAATCTGGTTGAGCAATACATAGCCCAACTGTATTTAATAAA  716

seq1  ACATGTCACGCACTCGGGTGACAAGCACAATGTTAGGAGCCTGAAGAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCACGCACTCGGGTGACAAGCACAATGTTAGGAGCCTGAAGAGGA  766

seq1  CCTAACCAGCAAAAGCTGCATAACATGCTAAAGCATTAGCATGTCTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCAGCAAAAGCTGCATAACATGCTAAAGCATTAGCATGTCTGTTT  816

seq1  AGTATATTTCAACTGTAAATGCTCATGAAGAGCAAGACAGCAAAGCTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTCAACTGTAAATGCTCATGAAGAGCAAGACAGCAAAGCTGTG  866

seq1  ATAATGCCCCAAATAGTGTTAACAATAGGAGCTAAGCATTGGAAAGAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCCCCAAATAGTGTTAACAATAGGAGCTAAGCATTGGAAAGAATA  916

seq1  TTTAATAGTTTGACTCAGGAAGTTGTGATAGCAAAACACTTTGAAAGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGTTTGACTCAGGAAGTTGTGATAGCAAAACACTTTGAAAGCAA  966

seq1  TCAAAAGTGCTTCAGATGCATTAGACATTTCTGTTTTCATCCTAGGACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTGCTTCAGATGCATTAGACATTTCTGTTTTCATCCTAGGACAT  1016

seq1  AAGGAGGGAGAGCTTTCATATTAACTCTGTCAGAAATTCAATAGGTACCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGAGAGCTTTCATATTAACTCTGTCAGAAATTCAATAGGTACCC  1066

seq1  TTAGACAACAATGGCGTACTGGCAAGTGAAGCCTTCAGAATCTGTGATTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAACAATGGCGTACTGGCAAGTGAAGCCTTCAGAATCTGTGATTG  1116

seq1  ACTTGATGCGCACAGCACGAAGTAAAAACAAGCCCAGAGCATGATGAAAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGCGCACAGCACGAAGTAAAAACAAGCCCAGAGCATGATGAAAG  1166

seq1  TGAATTC  1206
      |||||||
seq2  TGAATTC  1173

seq1: chr16_79702681_79703007
seq2: B6Ng01-144F12.g_72_398

seq1  CTATAATTCTTAATTAGAAAAAAATCAGAAGGATAATGAAGTGATCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTCTTAATTAGAAAAAAATCAGAAGGATAATGAAGTGATCCCCT  50

seq1  TTTAAAGAAGTAGCTTCTTGAAAATATTTACTAGCCTACAAAAAATTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAGTAGCTTCTTGAAAATATTTACTAGCCTACAAAAAATTAGG  100

seq1  TTTAACTATAATGATTTTTAAATCAAATAATTCTGTTTGTTTGTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTATAATGATTTTTAAATCAAATAATTCTGTTTGTTTGTTTGTTT  150

seq1  GTTTTGGTTTTGGTTTTGGTTTTTGTTTGTTTGTTTTTTGTTGTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTTGGTTTTGGTTTTTGTTTGTTTGTTTTTTGTTGTTGTTGT  200

seq1  TTTTTTTTCAATACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTTTTCAATACAGGGTTTCTCTGTGTATCCCTGGCTGTCCTGGAACT  250

seq1  CACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATATGCCTGCCTCTGC  300
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACTAGTCTGGCCTGGAACTCAGAAATATGCCTGCCTCTGC  300

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAA  327
      |||||||| ||||||||||||||||||
seq2  CTCTGCCTTCCAAGTGCTGGGATTAAA  327