BAC Information

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BAC

Clone NameB6Ng01-144G13
Chromosome16 (Build37)
Map Location 27,195,531 - 27,196,631
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneOstn, Uts2d, Ccdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144G13.bB6Ng01-144G13.g
ACCDH942093DH942094
length1,0831,148
definitionDH942093|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G13, 5' end.DH942094|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcaaaacaattccccaatcttgattgttgatgagacatgaata
tatatttttcatgaaaagtttaataaaacataacttttaaaatgcaccac
aaaggagaaacagctgtgaatgctaaggtttgctctgactaatgtaatac
tagcctataatcatagactccattctgcccccaaacaaattgcactgtga
caaaaactgtctgcaaaagaaaagtcaaaatgaatataacattggactca
gcttcagtggagtgatccagaataatagtcagtgcagattaaatgggttc
tgacaacagggtaagatatgactgctggcagcaaagaacagtcgtgctgc
caaaacgaagctggaatcctgttctgaaaagaagggatgtccagaaggaa
accacactgggattgaaagcagccttttgcccataatggttagttatttt
aaaaccacagaaccctcagactttcagacagggcaagtcagtgttccaga
gtggcagggtggagtgatctgcatggttttgctgagtggcagagaactca
acacactggagagagacagttgaggttctcttcccagccctgattctcac
cctccaacaaaatcaattagccactaacaattcactgtcccagttttctt
caagtatatccacataaatagatttactacacagaatttgcaaggatgtc
acctgcttgcatcttagaagtagaacagaagttgcagagctgtggaggct
tttcagacacactgatgcaactagaccttagaggcaaacttcaagtcaca
cacctacacgttgccaccatatacttcttcaatttgacacaacagactaa
gaattatccctttattgtttccttttctttgaagttggctagataactgt
tactttttggagagttaaacttacattttagtaccaatgtgaaatttata
tatgccatgatgacattttatgaaacaatgcctcccatgtaatattctaa
ttcaaataaacacatgctatatgctacaggagaaatacaagaagaagtgc
caagacagtagcatgtctatgatggatatatct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctgaaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggttagaaggacacatgctccactat
tttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacgtctacacaatg
gagtactactcagctattaaagagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
tgggatacccaagatataagatacattttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatctaccccataatc
agcatccaaacgctgacaccattgcatacactagcagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgcagaggcctagcaaaca
cagaagtgatgctcacagtcagctaatggatggatcacagggctcccatg
gagagctagagaagtacccagagctaaaaggatctgcaccctatagtgac
aacatatgactaacagtactcggagctcttgactctagctgcatatgtat
caaagaatgcctagttcgcatccctgaagagagcccatttgaacgcaact
ttattgccagtaaggagtccaggccataggagatgtgtgtgaggcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27195531_27196631
seq2: B6Ng01-144G13.b_49_1131

seq1  GAATTCTGCAAAACAATTCCCCAATCTTGATTGTTGATGAGACATGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAAAACAATTCCCCAATCTTGATTGTTGATGAGACATGAATA  50

seq1  TATATTTTTCATGAAAAGTTTAATAAAACATAACTTTTAAAATGCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCATGAAAAGTTTAATAAAACATAACTTTTAAAATGCACCAC  100

seq1  AAAGGAGAAACAGCTGTGAATGCTAAGGTTTGCTCTGACTAATGTAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAAACAGCTGTGAATGCTAAGGTTTGCTCTGACTAATGTAATAC  150

seq1  TAGCCTATAATCATAGACTCCATTCTGCCCCCAAACAAATTGCACTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTATAATCATAGACTCCATTCTGCCCCCAAACAAATTGCACTGTGA  200

seq1  CAAAAACTGTCTGCAAAAGAAAAGTCAAAATGAATATAACATTGGACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTGTCTGCAAAAGAAAAGTCAAAATGAATATAACATTGGACTCA  250

seq1  GCTTCAGTGGAGTGATCCAGAATAATAGTCAGTGCAGATTAAATGGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTGGAGTGATCCAGAATAATAGTCAGTGCAGATTAAATGGGTTC  300

seq1  TGACAACAGGGTAAGATATGACTGCTGGCAGCAAAGAACAGTCGTGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAGGGTAAGATATGACTGCTGGCAGCAAAGAACAGTCGTGCTGC  350

seq1  CAAAACGAAGCTGGAATCCTGTTCTGAAAAGAAGGGATGTCCAGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGAAGCTGGAATCCTGTTCTGAAAAGAAGGGATGTCCAGAAGGAA  400

seq1  ACCACACTGGGATTGAAAGCAGCCTTTTGCCCATAATGGTTAGTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTGGGATTGAAAGCAGCCTTTTGCCCATAATGGTTAGTTATTTT  450

seq1  AAAACCACAGAACCCTCAGACTTTCAGACAGGGCAAGTCAGTGTTCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACAGAACCCTCAGACTTTCAGACAGGGCAAGTCAGTGTTCCAGA  500

seq1  GTGGCAGGGTGGAGTGATCTGCATGGTTTTGCTGAGTGGCAGAGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGTGGAGTGATCTGCATGGTTTTGCTGAGTGGCAGAGAACTCA  550

seq1  ACACACTGGAGAGAGACAGTTGAGGTTCTCTTCCCAGCCCTGATTCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGGAGAGAGACAGTTGAGGTTCTCTTCCCAGCCCTGATTCTCAC  600

seq1  CCTCCAACAAAATCAATTAGCCACTAACAATTCACTGTCCCAGTTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACAAAATCAATTAGCCACTAACAATTCACTGTCCCAGTTTTCTT  650

seq1  CAAGTATATCCACATAAATAGATTTACTACACAGAATTTGCAAGGATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATATCCACATAAATAGATTTACTACACAGAATTTGCAAGGATGTC  700

seq1  ACCTGCTTGCATCTTAGAAGTAGAACAGAAGTTGCAGAGCTGTGGAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTGCATCTTAGAAGTAGAACAGAAGTTGCAGAGCTGTGGAGGCT  750

seq1  TTTCAGACACACTGATGCAACTAGACCTTAGAGGCAAACTTCAAGTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACACACTGATGCAACTAGACCTTAGAGGCAAACTTCAAGTCACA  800

seq1  CACCTACACGTTGCCACCATATACTTCTTCAATTTGACACAACAGACTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACACGTTGCCACCATATACTTCTTCAATTTGACACAACAGACTAA  850

seq1  GAATTATCCCTTTATTGTTTCCTTTTCTTTGAAGTTGGCTAGATAACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCCCTTTATTGTTTCCTTTTCTTTGAAGTTGGCTAGATAACTGT  900

seq1  TACTTTTTGGAGAGTTAAAACTTACATTTTAGGTACCAATGTGAAATTTT  950
      |||||||||||||||| |||||||||||||| |||||||||||||| |||
seq2  TACTTTTTGGAGAGTT-AAACTTACATTTTA-GTACCAATGTGAAA-TTT  947

seq1  ATATATGCCATGATGACATTTTTATGAAACAATGCCTCCCATGTAAATAA  1000
      |||||||||||||||||| |||||||||||||||||||||||||||   |
seq2  ATATATGCCATGATGACA-TTTTATGAAACAATGCCTCCCATGTAA--TA  994

seq1  TTCTAATTCAAAATAAACACATGCTCATATGCTTACAGGAGAAATACAAG  1050
      ||||||||| ||||||||||||||| |||||| |||||||||||||||||
seq2  TTCTAATTC-AAATAAACACATGCT-ATATGC-TACAGGAGAAATACAAG  1041

seq1  AAAGAAGTGCCAAATAGGAACAGTAGTCATGTCTATGATGGTATTATATC  1100
       ||||||||||||      ||||||| ||||||||||||||   ||||||
seq2  -AAGAAGTGCCAA-----GACAGTAG-CATGTCTATGATGG--ATATATC  1082

seq1  T  1101
      |
seq2  T  1083