BAC Information

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BAC

Clone NameB6Ng01-144P09
Chromosome16 (Build37)
Map Location 41,373,684 - 41,536,646
singlet/doubletdoublet
Overlap geneEG667450, Lsamp
Upstream genenone
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144P09.bB6Ng01-144P09.g
ACCDH942500DH942501
length1,1671,118
definitionDH942500|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P09, 5' end.DH942501|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,535,523 - 41,536,646)(41,373,684 - 41,374,822)
sequence
gaattccaggcactgcattgctgttaacctatagatctgtggatcacact
ttggttccttgactttgggatggaagtggtgtgtggtcttcatcagttcc
ttctatgagttttataaagacttgaagtttcctctgagacacagccaggt
taggcatggatggctcaggctatctctttcaaatttggttataattatat
agtatccttttttttttcaaaaggataaaaattatggaatatgaaagcaa
gatgttcacttcttagctgctatgcacaattggactaaaggctatattaa
attaaaacaatgactacagaaactcttgttttatggaagcaagaaggtaa
tgttttgaagacttgtcagctaagttcctgtcgttgaagaatcagaacta
caagcctcccttgtctcctattgccatttctaactattcagggccacaca
ctcactaagagaggatttttctccccctgccatttcactttctcagtgcc
aagcatctactgtggctgccaatgaatcaagttctcctccctctcctccc
ctggaagctcacactcccagcaaaatgtcaccaacaaagtagaagcatgc
ctttcccaggctagacttgcaaacagaaagtaacagcactattcttcacc
agaaaactgacccacaaagcagactggatccagttaaagagcctgaggag
aaggtcagctaagaaaacaaaagtaactcactctatagttacttctgata
gagctccaccaacctcaaaaataaagcctcgtctcagtcagagaaaataa
aaaggagggcatgttaggtgaggtctggagaagcaatggattcccatagg
tgacttatttgcatgttgtttatctgtcttccttctccctgggaataact
ggtgttggatttgttccctttcctcagactccatttctacattgtaatat
ctgaaaaactgtgatattaaaaacaaaacaaaattccaaattctttgcgc
aatcatcatgcaacacatatccatacgtacagatcttttttgtaatgaga
atgcctctttagatgtaagaatcttgtgtttccctacatggaagtgcagc
atcatttattttgccataaacacgtcatgtttccttgaatgtaactttag
gatctggtctgctcatt
gaattctgccttttcaacaatacttgtgagacttgtgttttttttttttt
ttaacatactgactgtagcctgagaaactacccctcatttaatactccta
gtatagcaaagacttaaatatagttttaagactgtaaataatgttcttag
gatattgttaaaaatacttatctttcttgaatctttcttgatataaaaag
ataactaacacatactgcatatttatatgggcttagattttgtacagtgt
agacaaagaaaaaactaaaactattataactatctttaggttatatcttt
ccagacatcttctatcattcaatgtcctggtgctctacttattggagaaa
aaacagtacatttatatttaacatagacatcatgacatatccaactaaga
gcaacaaacccacagagctcttaggtgaagagggccttccatccctgttc
tggtacttttggtccatgtcactattgttttattttttggttgctgaaag
aaaaaatgtaaagttctagattattttatgttctcaaaggctctataaca
ttaaaaagtctttctctgtgtgtcttaaatcagttgctaggagacactgg
ctaaacaatcataaatcaataaacctgtgacattctgttccctgaaagta
gagaggttaacatgtccttttgcaacagagagcatatgagagagagctgg
gcaatctggtcaccggcaagatttgatagttcttagccaagcacaagaga
acacaataaaacaagatacttttctgagaaaagaatgtctgagataatat
tgaaaactggatttggatgttggaacctaaaatgagagttgatatcataa
gacaaaatggttttacgtaacaccaggtaaatttaataaatggaattaat
gagtattttgattatggacattttagtagatgtttacagtcataaaatga
tacagatacttcagtaatcagtacatcattttctctacgtctcactttta
actataaaagtgtgctctaaccctactaataaataagcaggtactcatga
gctagaatatatggtcctctttcttggatacatacttcaagaataagtaa
aatttccctcaccttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41535523_41536646
seq2: B6Ng01-144P09.b_49_1215 (reverse)

seq1  -------------------------------------------------A  1
                                                        
seq2  AATGAGCAGACCAGATCCTAAAGTTACATTCAAGGAAACATGACGTGTTT  50

seq1  ATGAGCAGAATAAATGGATGCTGGCACTTCCATGTAGGG-AACACATAGA  50
      ||| ||| ||||||| |||||| |||||||||||||||| |||||| |||
seq2  ATG-GCAAAATAAAT-GATGCT-GCACTTCCATGTAGGGAAACACA-AGA  96

seq1  TGTCTACATCTAGAAGAGGCATTCTCATTAC-AAAAAGATCTGTACGGTA  99
      |   |||||||| |||||||||||||||||| |||||||||||||| |||
seq2  TTCTTACATCTA-AAGAGGCATTCTCATTACAAAAAAGATCTGTAC-GTA  144

seq1  TGGATATGTGTTTGCATGATGATTGCGCAAAGAATTTGGAATTTTGTTTT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGTG-TTGCATGATGATTGCGCAAAGAATTTGGAATTTTGTTTT  193

seq1  GTTTTTAATTATCACAGTTTTTCAGATATTACAATGTAGAAATGGAGTCT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAA-TATCACAGTTTTTCAGATATTACAATGTAGAAATGGAGTCT  242

seq1  GAGGAAAGGGAACAAATCCAACACCAGTTATTCCCAGGGAGAAGGAAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGGAACAAATCCAACACCAGTTATTCCCAGGGAGAAGGAAGAC  292

seq1  AGATAAACAACATGCAAATAAGTCACCTATGGGAATCCATTGCTTCTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACAACATGCAAATAAGTCACCTATGGGAATCCATTGCTTCTCCA  342

seq1  GACCTCACCTAACATGCCCTCCTTTTTATTTTCTCTGACTGAGACGAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACCTAACATGCCCTCCTTTTTATTTTCTCTGACTGAGACGAGGC  392

seq1  TTTATTTTTGAGGTTGGTGGAGCTCTATCAGAAGTAACTATAGAGTGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGAGGTTGGTGGAGCTCTATCAGAAGTAACTATAGAGTGAGT  442

seq1  TACTTTTGTTTTCTTAGCTGACCTTCTCCTCAGGCTCTTTAACTGGATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTTTTCTTAGCTGACCTTCTCCTCAGGCTCTTTAACTGGATCC  492

seq1  AGTCTGCTTTGTGGGTCAGTTTTCTGGTGAAGAATAGTGCTGTTACTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTTTGTGGGTCAGTTTTCTGGTGAAGAATAGTGCTGTTACTTTC  542

seq1  TGTTTGCAAGTCTAGCCTGGGAAAGGCATGCTTCTACTTTGTTGGTGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAAGTCTAGCCTGGGAAAGGCATGCTTCTACTTTGTTGGTGACA  592

seq1  TTTTGCTGGGAGTGTGAGCTTCCAGGGGAGGAGAGGGAGGAGAACTTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGGGAGTGTGAGCTTCCAGGGGAGGAGAGGGAGGAGAACTTGAT  642

seq1  TCATTGGCAGCCACAGTAGATGCTTGGCACTGAGAAAGTGAAATGGCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCAGCCACAGTAGATGCTTGGCACTGAGAAAGTGAAATGGCAGG  692

seq1  GGGAGAAAAATCCTCTCTTAGTGAGTGTGTGGCCCTGAATAGTTAGAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAAATCCTCTCTTAGTGAGTGTGTGGCCCTGAATAGTTAGAAAT  742

seq1  GGCAATAGGAGACAAGGGAGGCTTGTAGTTCTGATTCTTCAACGACAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAGGAGACAAGGGAGGCTTGTAGTTCTGATTCTTCAACGACAGGA  792

seq1  ACTTAGCTGACAAGTCTTCAAAACATTACCTTCTTGCTTCCATAAAACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTGACAAGTCTTCAAAACATTACCTTCTTGCTTCCATAAAACAA  842

seq1  GAGTTTCTGTAGTCATTGTTTTAATTTAATATAGCCTTTAGTCCAATTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGTAGTCATTGTTTTAATTTAATATAGCCTTTAGTCCAATTGT  892

seq1  GCATAGCAGCTAAGAAGTGAACATCTTGCTTTCATATTCCATAATTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCAGCTAAGAAGTGAACATCTTGCTTTCATATTCCATAATTTTTA  942

seq1  TCCTTTTGAAAAAAAAAAGGATACTATATAATTATAACCAAATTTGAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGAAAAAAAAAAGGATACTATATAATTATAACCAAATTTGAAAG  992

seq1  AGATAGCCTGAGCCATCCATGCCTAACCTGGCTGTGTCTCAGAGGAAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCTGAGCCATCCATGCCTAACCTGGCTGTGTCTCAGAGGAAACT  1042

seq1  TCAAGTCTTTATAAAACTCATAGAAGGAACTGATGAAGACCACACACCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTTTATAAAACTCATAGAAGGAACTGATGAAGACCACACACCAC  1092

seq1  TTCCATCCCAAAGTCAAGGAACCAAAGTGTGATCCACAGATCTATAGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCCAAAGTCAAGGAACCAAAGTGTGATCCACAGATCTATAGGTT  1142

seq1  AACAGCAATGCAGTGCCTGGAATTC  1124
      |||||||||||||||||||||||||
seq2  AACAGCAATGCAGTGCCTGGAATTC  1167

seq1: chr16_41373684_41374822
seq2: B6Ng01-144P09.g_67_1184

seq1  GAATTCTGCCTTTTCAACAATACTTGTGAGACTTGTGTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTTTTCAACAATACTTGTGAGACTTGTGTTTTTTTTTTTTT  50

seq1  TTAACATACTGACTGTAGCCTGAGAAACTACCCCTCATTTAATACTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATACTGACTGTAGCCTGAGAAACTACCCCTCATTTAATACTCCTA  100

seq1  GTATAGCAAAGACTTAAATATAGTTTTAAGACTGTAAATAATGTTCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCAAAGACTTAAATATAGTTTTAAGACTGTAAATAATGTTCTTAG  150

seq1  GATATTGTTAAAAATACTTATCTTTCTTGAATCTTTCTTGATATAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTTAAAAATACTTATCTTTCTTGAATCTTTCTTGATATAAAAAG  200

seq1  ATAACTAACACATACTGCATATTTATATGGGCTTAGATTTTGTACAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAACACATACTGCATATTTATATGGGCTTAGATTTTGTACAGTGT  250

seq1  AGACAAAGAAAAAACTAAAACTATTATAACTATCTTTAGGTTATATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGAAAAAACTAAAACTATTATAACTATCTTTAGGTTATATCTTT  300

seq1  CCAGACATCTTCTATCATTCAATGTCCTGGTGCTCTACTTATTGGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATCTTCTATCATTCAATGTCCTGGTGCTCTACTTATTGGAGAAA  350

seq1  AAACAGTACATTTATATTTAACATAGACATCATGACATATCCAACTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTACATTTATATTTAACATAGACATCATGACATATCCAACTAAGA  400

seq1  GCAACAAACCCACAGAGCTCTTAGGTGAAGAGGGCCTTCCATCCCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAACCCACAGAGCTCTTAGGTGAAGAGGGCCTTCCATCCCTGTTC  450

seq1  TGGTACTTTTGGTCCATGTCACTATTGTTTTATTTTTTGGTTGCTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTTTGGTCCATGTCACTATTGTTTTATTTTTTGGTTGCTGAAAG  500

seq1  AAAAAATGTAAAGTTCTAGATTATTTTATGTTCTCAAAGGCTCTATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTAAAGTTCTAGATTATTTTATGTTCTCAAAGGCTCTATAACA  550

seq1  TTAAAAAGTCTTTCTCTGTGTGTCTTAAATCAGTTGCTAGGAGACACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTCTTTCTCTGTGTGTCTTAAATCAGTTGCTAGGAGACACTGG  600

seq1  CTAAACAATCATAAATCAATAAACCTGTGACATTCTGTTCCCTGAAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAATCATAAATCAATAAACCTGTGACATTCTGTTCCCTGAAAGTA  650

seq1  GAGAGGTTAACATGTCCTTTTGCAACAGAGAGCATATGAGAGAGAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTAACATGTCCTTTTGCAACAGAGAGCATATGAGAGAGAGCTGG  700

seq1  GCAATCTGGTCACCGGCAAGATTTGATAGTTCTTAGCCAAGCACAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGGTCACCGGCAAGATTTGATAGTTCTTAGCCAAGCACAAGAGA  750

seq1  ACACAATAAAACAAGATACTTTTCTGAGAAAAGAATGTCTGAGATAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATAAAACAAGATACTTTTCTGAGAAAAGAATGTCTGAGATAATAT  800

seq1  TGAAAACTGGATTTGGATGTTGGAACCTAAAATGAGAGTTGATATCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGGATTTGGATGTTGGAACCTAAAATGAGAGTTGATATCATAA  850

seq1  GACAAAATGGTTTTACGTAACACCAGGTAAATTTAATAAATGGAATTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATGGTTTTACGTAACACCAGGTAAATTTAATAAATGGAATTAAT  900

seq1  GAGTATTTTGATTATGGACATTTTAGTAAGATGTTTTACAGTCCATAAAA  950
      ||||||||||||||||||||||||||| ||||| |||||||| |||||||
seq2  GAGTATTTTGATTATGGACATTTTAGT-AGATG-TTTACAGT-CATAAAA  947

seq1  TGATACAGATACTTCAGTAATTCAGTACATCATTTTCTCTAACGTCCTCA  1000
      |||||||||||||||||||| ||||||||||||||||||| |||| ||||
seq2  TGATACAGATACTTCAGTAA-TCAGTACATCATTTTCTCT-ACGT-CTCA  994

seq1  CTTTTAAACCTAATAAAAGTGTGCCTTCCTAACCCTACTAAATAAATAAG  1050
      |||||||  || ||||||||||||    ||||||||||| ||||||||||
seq2  CTTTTAA--CT-ATAAAAGTGTGC---TCTAACCCTACT-AATAAATAAG  1037

seq1  CCAGGTACTCATTGAAGCTTAGAATATATGTTCCTCTTTCTGTGATACAT  1100
       |||||||||||   ||| ||||||||||| ||||||||||  |||||||
seq2  -CAGGTACTCAT--GAGC-TAGAATATATGGTCCTCTTTCTTGGATACAT  1083

seq1  AACTCTCAAG-ATAAGTAAAAAATTCACTCTCACCTTCTT  1139
       ||| ||||| ||||||||||   |  | |||||||||||
seq2  -ACT-TCAAGAATAAGTAAAA---TTTCCCTCACCTTCTT  1118