BAC Information

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BAC

Clone NameB6Ng01-144P12
Chromosome16 (Build37)
Map Location 66,741,759 - 66,886,519
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144P12.bB6Ng01-144P12.g
ACCDH942506DH942507
length7791,175
definitionDH942506|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P12, 5' end.DH942507|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,885,741 - 66,886,519)(66,741,759 - 66,742,942)
sequence
gaattcagtaccaagagaggagttagtaaattatgaacagaagttgcctg
gaagagtagtttgctccaagttggttgaataaattgaaatcagtgctgac
tgaaccaggtttcctcttcctttacatcatttttttcctcaggtttgagg
ttaccttggtgtttcattagcaaatttctcttcctctatccattctacaa
atgcgaatgcatgaaagacaaggaagtagtatgccttacatgacatgcat
aaaataaatgaactcaggatacatagctcatttcacctgatgttaaattt
tccaattgaggaaacttctttgggaagatgttctgagactcaaaggcaaa
gttgagtcatgaggggttaaaaagagaaaggtcacagtgagtgactcagt
attctatcctggttagaacaagaaaaagaagaagaggaagaagtcaatgg
caattcagacctctgagaagtttgactgcctgccacacaggcttttaaat
tgattttcgaaaccacatatcctaagggtatttaggattagttgattcac
cacatgactcttctctctatttgtaaaactaaattatttgattttcaaga
attttatgctgcaagagagaactgaaatcatactaccttaaagtcagaaa
ctgtgagggagatgttggagggacagagtccttatgcccacccatgaagg
acttgatgcaagtatatggatgtatattaaaacctagcacgaagataacc
ctaaaatccttccttccttccttccttcc
gaattcagttcaagtgtattcggtgttctacgcaaaactcatagcagcat
agacacatacacacgcacacacttttaaatgagctataaaacaaacacag
tgccttcatctccacttgtctttgcagagtttggcagcatattcaaacag
gcagaggcatgtatttcctacaggcaaaggggatcactctacatttacat
gtgtagaagtgatgtgttaaaagaatcatccaaccagtgaccagtgacca
tgtgggaagatctcagacagcactgctgagaccagcaactctggggattt
ccattattagtgtttgttgctgtaaagggatgtctgctttatccttttta
ttctatgttccatatttttcatttatgtttctaaagaaagctcattatta
gcacacacagataatttaccagctggctaggtctgtatctatatgacaga
acagattttagttgaattgctgtttaatgtttactacactgtatatctgt
atgtgaccccatcttctctttcctaatttcttacacaaaacccactctct
ggatgccatcatgatctataggaatcctcttacccataaattcaacagga
caagtaataaataaatatataatcttccaatgcatctaaatattttcttt
ctggtaatcataatcatgtccaaagagaccataaatctttggcctggtta
ctataatgaccagaagtactctttccattttattggggtgagcattcatt
tacttactaatcatggctattctaattgtaaaatgtaaaaacttattctc
ccatagtaggtatgtgcatatgataaaagtacttgttcagttctatgaca
agaaattaatagggaaatttaagatataaattattaagatcagtctattt
gaaatcaattaacatcactctgctacacctatcttatttgttaagctatc
atcagtaataataaacttaaagcttgtgattatttgctctacattaggaa
aatacttgaaagcagcgagacactagaaatgtttcttgcagtgaaaatac
atttaatttccctggccttgatttgcttttctacatagtgagcagttctt
tgcttggggtagctagcatcaaggtgggagagagatactttctgagttga
ggaggtagtgtgagccacaaggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66885741_66886519
seq2: B6Ng01-144P12.b_50_828 (reverse)

seq1  GGAAGGAAGGAAGGAAGGAAGGATTTTAGGGTTATCTTCGTGCTAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGATTTTAGGGTTATCTTCGTGCTAGGTTT  50

seq1  TAATATACATCCATATACTTGCATCAAGTCCTTCATGGGTGGGCATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACATCCATATACTTGCATCAAGTCCTTCATGGGTGGGCATAAGG  100

seq1  ACTCTGTCCCTCCAACATCTCCCTCACAGTTTCTGACTTTAAGGTAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCCCTCCAACATCTCCCTCACAGTTTCTGACTTTAAGGTAGTAT  150

seq1  GATTTCAGTTCTCTCTTGCAGCATAAAATTCTTGAAAATCAAATAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTTCTCTCTTGCAGCATAAAATTCTTGAAAATCAAATAATTTA  200

seq1  GTTTTACAAATAGAGAGAAGAGTCATGTGGTGAATCAACTAATCCTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAAATAGAGAGAAGAGTCATGTGGTGAATCAACTAATCCTAAAT  250

seq1  ACCCTTAGGATATGTGGTTTCGAAAATCAATTTAAAAGCCTGTGTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAGGATATGTGGTTTCGAAAATCAATTTAAAAGCCTGTGTGGCAG  300

seq1  GCAGTCAAACTTCTCAGAGGTCTGAATTGCCATTGACTTCTTCCTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAACTTCTCAGAGGTCTGAATTGCCATTGACTTCTTCCTCTTCT  350

seq1  TCTTTTTCTTGTTCTAACCAGGATAGAATACTGAGTCACTCACTGTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTGTTCTAACCAGGATAGAATACTGAGTCACTCACTGTGACC  400

seq1  TTTCTCTTTTTAACCCCTCATGACTCAACTTTGCCTTTGAGTCTCAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTTAACCCCTCATGACTCAACTTTGCCTTTGAGTCTCAGAAC  450

seq1  ATCTTCCCAAAGAAGTTTCCTCAATTGGAAAATTTAACATCAGGTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCAAAGAAGTTTCCTCAATTGGAAAATTTAACATCAGGTGAAAT  500

seq1  GAGCTATGTATCCTGAGTTCATTTATTTTATGCATGTCATGTAAGGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGTATCCTGAGTTCATTTATTTTATGCATGTCATGTAAGGCATA  550

seq1  CTACTTCCTTGTCTTTCATGCATTCGCATTTGTAGAATGGATAGAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCTTGTCTTTCATGCATTCGCATTTGTAGAATGGATAGAGGAAG  600

seq1  AGAAATTTGCTAATGAAACACCAAGGTAACCTCAAACCTGAGGAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGCTAATGAAACACCAAGGTAACCTCAAACCTGAGGAAAAAAA  650

seq1  TGATGTAAAGGAAGAGGAAACCTGGTTCAGTCAGCACTGATTTCAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAAAGGAAGAGGAAACCTGGTTCAGTCAGCACTGATTTCAATTTA  700

seq1  TTCAACCAACTTGGAGCAAACTACTCTTCCAGGCAACTTCTGTTCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCAACTTGGAGCAAACTACTCTTCCAGGCAACTTCTGTTCATAAT  750

seq1  TTACTAACTCCTCTCTTGGTACTGAATTC  779
      |||||||||||||||||||||||||||||
seq2  TTACTAACTCCTCTCTTGGTACTGAATTC  779

seq1: chr16_66741759_66742942
seq2: B6Ng01-144P12.g_68_1242

seq1  GAATTCAGTTCAAGTGTATTCGGTGTTCTACGCAAAACTCATAGCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAAGTGTATTCGGTGTTCTACGCAAAACTCATAGCAGCAT  50

seq1  AGACACATACACACGCACACACTTTTAAATGAGCTATAAAACAAACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATACACACGCACACACTTTTAAATGAGCTATAAAACAAACACAG  100

seq1  TGCCTTCATCTCCACTTGTCTTTGCAGAGTTTGGCAGCATATTCAAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCATCTCCACTTGTCTTTGCAGAGTTTGGCAGCATATTCAAACAG  150

seq1  GCAGAGGCATGTATTTCCTACAGGCAAAGGGGATCACTCTACATTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCATGTATTTCCTACAGGCAAAGGGGATCACTCTACATTTACAT  200

seq1  GTGTAGAAGTGATGTGTTAAAAGAATCATCCAACCAGTGACCAGTGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAGTGATGTGTTAAAAGAATCATCCAACCAGTGACCAGTGACCA  250

seq1  TGTGGGAAGATCTCAGACAGCACTGCTGAGACCAGCAACTCTGGGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAGATCTCAGACAGCACTGCTGAGACCAGCAACTCTGGGGATTT  300

seq1  CCATTATTAGTGTTTGTTGCTGTAAAGGGATGTCTGCTTTATCCTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTAGTGTTTGTTGCTGTAAAGGGATGTCTGCTTTATCCTTTTTA  350

seq1  TTCTATGTTCCATATTTTTCATTTATGTTTCTAAAGAAAGCTCATTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTCCATATTTTTCATTTATGTTTCTAAAGAAAGCTCATTATTA  400

seq1  GCACACACAGATAATTTACCAGCTGGCTAGGTCTGTATCTATATGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAGATAATTTACCAGCTGGCTAGGTCTGTATCTATATGACAGA  450

seq1  ACAGATTTTAGTTGAATTGCTGTTTAATGTTTACTACACTGTATATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTAGTTGAATTGCTGTTTAATGTTTACTACACTGTATATCTGT  500

seq1  ATGTGACCCCATCTTCTCTTTCCTAATTTCTTACACAAAACCCACTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCCATCTTCTCTTTCCTAATTTCTTACACAAAACCCACTCTCT  550

seq1  GGATGCCATCATGATCTATAGGAATCCTCTTACCCATAAATTCAACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCATCATGATCTATAGGAATCCTCTTACCCATAAATTCAACAGGA  600

seq1  CAAGTAATAAATAAATATATAATCTTCCAATGCATCTAAATATTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATAAATAAATATATAATCTTCCAATGCATCTAAATATTTTCTTT  650

seq1  CTGGTAATCATAATCATGTCCAAAGAGACCATAAATCTTTGGCCTGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATCATAATCATGTCCAAAGAGACCATAAATCTTTGGCCTGGTTA  700

seq1  CTATAATGACCAGAAGTACTCTTTCCATTTTATTGGGGTGAGCATTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGACCAGAAGTACTCTTTCCATTTTATTGGGGTGAGCATTCATT  750

seq1  TACTTACTAATCATGGCTATTCTAATTGTAAAATGTAAAAACTTATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTAATCATGGCTATTCTAATTGTAAAATGTAAAAACTTATTCTC  800

seq1  CCATAGTAGGTATGTGCATATGATAAAAGTACTTGTTCAGTTCTATGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTAGGTATGTGCATATGATAAAAGTACTTGTTCAGTTCTATGACA  850

seq1  AGAAATTAATAGGGAAATTTAAGATATAAATTATTAAGATCAGTCTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAATAGGGAAATTTAAGATATAAATTATTAAGATCAGTCTATTT  900

seq1  GAAAATCAATTAACATCACTCTGCTACACCTATCTTATTTTGTTAAAGCT  950
      | ||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  G-AAATCAATTAACATCACTCTGCTACACCTATCTTA-TTTGTT-AAGCT  947

seq1  ATCATCAAGTAATAATAAACTTAAAGCTTGTGATTATTTGCTCTACATTA  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATC-AGTAATAATAAACTTAAAGCTTGTGATTATTTGCTCTACATTA  996

seq1  GGAAAATACTTGAAAGCAGCGAGACACTAGAAATGTTTCTTGCAGTGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATACTTGAAAGCAGCGAGACACTAGAAATGTTTCTTGCAGTGAAA  1046

seq1  ATACATTTATTTTCCCT-GCCTTGATTTGCTTTTCTACCATAGTGAGCAA  1099
      ||||||||| ||||||| ||||||||||||||||||| |||||||||| |
seq2  ATACATTTAATTTCCCTGGCCTTGATTTGCTTTTCTA-CATAGTGAGC-A  1094

seq1  GTCCTTTGCTTTGGGTAGCTAGCATCCAGGTGGAGAG-GAGATACTTTCC  1148
      || |||||||| |||||||||||||| |||||| ||| ||||||||||| 
seq2  GTTCTTTGCTTGGGGTAGCTAGCATCAAGGTGG-GAGAGAGATACTTTC-  1142

seq1  CTAGAGTTTGAGGAGGTATGTTGAGCCACAAAGCTT  1184
         ||| |||||||||||   |||||||||| ||||
seq2  --TGAG-TTGAGGAGGTAGTGTGAGCCACAAGGCTT  1175