BAC Information

Click to search

BAC

Clone NameB6Ng01-145H10
Chromosome16 (Build37)
Map Location 87,890,286 - 87,914,440
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145H10.bB6Ng01-145H10.g
ACCDH942859DH942860
length1,083936
definitionDH942859|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H10, 5' end.DH942860|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,913,341 - 87,914,440)(87,890,286 - 87,891,222)
sequence
gaattcatatacaaatcacggaagaacaatgacattgagcaggtgagtca
tctctttctaagacagggtagtttttactttgaatttgctgtctgaagtt
tgagaatgttaaggatgctttccctgtttgtaacagtctattgaattaga
tgcccagaagagtcatttctgagttagagcaaagagcattgaatccctgc
caggtgctgcaggctctgcagctctatcatttattaatgagaagacggaa
gagtcttgtacaccaaatccaattagcgctacttggaatgacagtgcaga
aattccaaactcagttgatttcttcaacagttatttgttcttaagataga
aactataaaaagagcaagagacgcataatcaaaaaatgacagacgacatg
agagaactgtcaccagcccttcagtatactttctgagcagaggtactctt
gcaaaacaatttctattaaaaaaaaaatacaaagcagtatttttaaattg
gtcatttacttacactgagatacaatacgtggaaagataacgtatgtaac
ttttgctatgaatatgataaaccatacaacatgaaaataaagtatatttg
agactttattttttaaaattgcatctaggatgatggagcaatttcaatag
gcaagccattttacctaggtgttcacgcctggaacttagacgctttgagg
agaaaacccaaaactgactgaaattgaagataattcccttctaaactaaa
atacagagctccggggcattgtagcatactaatccactagtttaatttaa
agataccattagaatctcaaagctaagtactattacctctattaccaata
tcatgaaactcttaataattttcaacataaggctccacgtgtccattttg
cacagagtcctgcaaattgtatggctggctttgattaataaccagatagg
agagccactttccttatgtgcaaactctatgagtacccaaccctagacga
tcatctatctgctcttatggaaaccctgccagagtacagttgtgagttat
gagccttctggaactcactatagaaactgtctt
gaattcagcatagcgacacactattggcttattcaaacatcagcagagaa
attacatgtccgtgcagggtgtcagagttctgtgagttgttgactcaggt
cagatagccctgttatgtcttcacattcctctttatccttaaggttaagc
tgttcccaggaatgttttaactacggggcatacccgggtttgtttttctt
ttttctcagccccaggcagcctctaggctcacaaacaaccagcaatttct
gagtactttatatgacttacaggtcttgaaatgtcatctttctttcagtt
tattatctgagaactgttgtaatggaaaaggatgttcttatctgtgtgac
ttatagaactgttgaggaaaaattaggctgtctggacacttggccattga
aaaggtgatgggtgatgagggctgtagaagagagaaaatgattgcaaaca
aactctcctgttgctgtgaagagacaccatggccaaggcaatttataaaa
gggcatttaattggggacttgcttacagtttcagagggtgagcccatgac
tgtcatgacaaacagcatgacagaaggcaggaagctatgatatgcatata
agatggattggggtttagggttagggttacatcaattggaaggagtgaag
gaggaagatactgggctttttgaaacctcaaagcctcactcccacacata
actcctccaaaaaggtcatcccgcttaatttcttcctaaataacccacca
actggggttggttacatgaatacatgagtacatgagtctggggagaccat
tctcacccagtccaccacacatcagataacatctgctcacacacttccct
ttcaattctctactaattgtggagactcttgggagatgatacatttctct
aatggacataaggaggtaaaccttaacagcaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87913341_87914440
seq2: B6Ng01-145H10.b_48_1130 (reverse)

seq1  AAGACAGTTTTCTATAGTGAGGTCCAGGAAAGGGGCTTCATAACCTCACA  50
      ||||||| ||||||||||||| |||||  ||||    |||||| ||||||
seq2  AAGACAG-TTTCTATAGTGAGTTCCAG--AAGG---CTCATAA-CTCACA  43

seq1  ACTGTAACTCTGGGCAGGGTTTCCATAAAGGAGCAGGATTAGAATGAATC  100
      ||||| ||||| ||||||||||||||||  ||||||   ||| ||| |||
seq2  ACTGT-ACTCT-GGCAGGGTTTCCATAA--GAGCAG--ATAG-ATG-ATC  85

seq1  GTCCTAGGGTTGGGTACTCAATAGAGTTTGCACATAAGGAAAGTGGCTCT  150
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GT-CTAGGGTTGGGTACTC-ATAGAGTTTGCACATAAGGAAAGTGGCTCT  133

seq1  CCTATCTGGTTATTAATCAAAGCCAGCCATACAATTTGCAGGACTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGGTTATTAATCAAAGCCAGCCATACAATTTGCAGGACTCTGTG  183

seq1  CAAAATGGACACGTGGAGCCTTATGTTGAAAATTATTAAGAGTTTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGACACGTGGAGCCTTATGTTGAAAATTATTAAGAGTTTCATGA  233

seq1  TATTGGTAATAGAGGTAATAGTACTTAGCTTTGAGATTCTAATGGTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTAATAGAGGTAATAGTACTTAGCTTTGAGATTCTAATGGTATCT  283

seq1  TTAAATTAAACTAGTGGATTAGTATGCTACAATGCCCCGGAGCTCTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAACTAGTGGATTAGTATGCTACAATGCCCCGGAGCTCTGTAT  333

seq1  TTTAGTTTAGAAGGGAATTATCTTCAATTTCAGTCAGTTTTGGGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTAGAAGGGAATTATCTTCAATTTCAGTCAGTTTTGGGTTTTCT  383

seq1  CCTCAAAGCGTCTAAGTTCCAGGCGTGAACACCTAGGTAAAATGGCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGCGTCTAAGTTCCAGGCGTGAACACCTAGGTAAAATGGCTTGC  433

seq1  CTATTGAAATTGCTCCATCATCCTAGATGCAATTTTAAAAAATAAAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAATTGCTCCATCATCCTAGATGCAATTTTAAAAAATAAAGTCT  483

seq1  CAAATATACTTTATTTTCATGTTGTATGGTTTATCATATTCATAGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATACTTTATTTTCATGTTGTATGGTTTATCATATTCATAGCAAAA  533

seq1  GTTACATACGTTATCTTTCCACGTATTGTATCTCAGTGTAAGTAAATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATACGTTATCTTTCCACGTATTGTATCTCAGTGTAAGTAAATGAC  583

seq1  CAATTTAAAAATACTGCTTTGTATTTTTTTTTTAATAGAAATTGTTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAAATACTGCTTTGTATTTTTTTTTTAATAGAAATTGTTTTGC  633

seq1  AAGAGTACCTCTGCTCAGAAAGTATACTGAAGGGCTGGTGACAGTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACCTCTGCTCAGAAAGTATACTGAAGGGCTGGTGACAGTTCTCT  683

seq1  CATGTCGTCTGTCATTTTTTGATTATGCGTCTCTTGCTCTTTTTATAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCGTCTGTCATTTTTTGATTATGCGTCTCTTGCTCTTTTTATAGTT  733

seq1  TCTATCTTAAGAACAAATAACTGTTGAAGAAATCAACTGAGTTTGGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTAAGAACAAATAACTGTTGAAGAAATCAACTGAGTTTGGAATT  783

seq1  TCTGCACTGTCATTCCAAGTAGCGCTAATTGGATTTGGTGTACAAGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTGTCATTCCAAGTAGCGCTAATTGGATTTGGTGTACAAGACTC  833

seq1  TTCCGTCTTCTCATTAATAAATGATAGAGCTGCAGAGCCTGCAGCACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTCTTCTCATTAATAAATGATAGAGCTGCAGAGCCTGCAGCACCTG  883

seq1  GCAGGGATTCAATGCTCTTTGCTCTAACTCAGAAATGACTCTTCTGGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATTCAATGCTCTTTGCTCTAACTCAGAAATGACTCTTCTGGGCA  933

seq1  TCTAATTCAATAGACTGTTACAAACAGGGAAAGCATCCTTAACATTCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCAATAGACTGTTACAAACAGGGAAAGCATCCTTAACATTCTCA  983

seq1  AACTTCAGACAGCAAATTCAAAGTAAAAACTACCCTGTCTTAGAAAGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGACAGCAAATTCAAAGTAAAAACTACCCTGTCTTAGAAAGAGA  1033

seq1  TGACTCACCTGCTCAATGTCATTGTTCTTCCGTGATTTGTATATGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACCTGCTCAATGTCATTGTTCTTCCGTGATTTGTATATGAATTC  1083

seq1: chr16_87890286_87891222
seq2: B6Ng01-145H10.g_67_1002

seq1  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAGAGAA  50

seq1  ATTACATGTCCGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTCCGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGGT  100

seq1  CAGATAGCCCTGTTATGTCTTCACATTCCTCTTTATCCTTAAGGTTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCCCTGTTATGTCTTCACATTCCTCTTTATCCTTAAGGTTAAGC  150

seq1  TGTTCCCAGGAATGTTTTAACTACGGGGCATACCCGGGTTTGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAATGTTTTAACTACGGGGCATACCCGGGTTTGTTTTTCTT  200

seq1  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCT  250

seq1  GAGTACTTTATATGACTTACAGGTCTTGAAATGTCATCTTTCTTTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTTATATGACTTACAGGTCTTGAAATGTCATCTTTCTTTCAGTT  300

seq1  TATTATCTGAGAACTGTTGTAATGGAAAAGGATGTTCTTATCTGTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTGAGAACTGTTGTAATGGAAAAGGATGTTCTTATCTGTGTGAC  350

seq1  TTATAGAACTGTTGAGGAAAAATTAGGCTGTCTGGACACTTGGCCATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACTGTTGAGGAAAAATTAGGCTGTCTGGACACTTGGCCATTGA  400

seq1  AAAGGTGATGGGTGATGAGGGCTGTAGAAGAGAGAAAATGATTGCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATGGGTGATGAGGGCTGTAGAAGAGAGAAAATGATTGCAAACA  450

seq1  AACTCTCCTGTTGCTGTGAAGAGACACCATGGCCAAGGCAATTTATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCTGTTGCTGTGAAGAGACACCATGGCCAAGGCAATTTATAAAA  500

seq1  GGGCATTTAATTGGGGACTTGCTTACAGTTTCAGAGGGTGAGCCCATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTAATTGGGGACTTGCTTACAGTTTCAGAGGGTGAGCCCATGAC  550

seq1  TGTCATGACAAACAGCATGACAGAAGGCAGGAAGCTATGATATGCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGACAAACAGCATGACAGAAGGCAGGAAGCTATGATATGCATATA  600

seq1  AGATGGATTGGGGTTTAGGGTTAGGGTTACATCAATTGGAAGGAGTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATTGGGGTTTAGGGTTAGGGTTACATCAATTGGAAGGAGTGAAG  650

seq1  GAGGAAGATACTGGGCTTTTTGAAACCTCAAAGCCTCACTCCCACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGATACTGGGCTTTTTGAAACCTCAAAGCCTCACTCCCACACATA  700

seq1  ACTCCTCCAAAAAGGTCATTCCGCTTAA-TTCTTCCTAAATAACCCACCA  749
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ACTCCTCCAAAAAGGTCATCCCGCTTAATTTCTTCCTAAATAACCCACCA  750

seq1  ACT-GGGTTGGTTACATGAATACATGAGTACATGAGTCTGGGGAGACCAT  798
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGTTGGTTACATGAATACATGAGTACATGAGTCTGGGGAGACCAT  800

seq1  TCTCACCCAGTCCACCACACATCAGATAACATCTGCTCACACACTTCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCAGTCCACCACACATCAGATAACATCTGCTCACACACTTCCCT  850

seq1  TTCAATTCTCTACTAATTGTGGAGACTCTTGGGAGATGAATACATTTCTC  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCAATTCTCTACTAATTGTGGAGACTCTTGGGAGATG-ATACATTTCTC  899

seq1  TTAATGGACATTAGGAAGTTAAACCTTAACAGCAAGGTC  937
       |||||||||| ||| || ||||||||||||||||||||
seq2  -TAATGGACATAAGG-AGGTAAACCTTAACAGCAAGGTC  936