BAC Information

Click to search

BAC

Clone NameB6Ng01-145I18
Chromosome3 (Build37)16 (Build37)
Map Location 41,059,228 - 41,059,73761,449,391 - 61,449,983
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145I18.bB6Ng01-145I18.g
ACCDH942923DH942924
length947970
definitionDH942923|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I18, 5' end.DH942924|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,228 - 41,059,737)(61,449,391 - 61,449,983)
sequence
gaattctttgtttagctctgagccccatttttagtggggttatttgattt
tctggagtccacattcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttagtggtctt
tttgtcttattgatggtgccttttgccttgcagaagctttgcaactttta
tgaggtctcatttgttgattctcgatcttacagcacaagccattgctgtt
caatgcagtatttttcccctctgcccatatcttcaaggcttttccccact
ttctccttaataagtttcagtgtctctggatttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagataggaatggatcaattcgta
ttcttctacatgataacggccagttgtgacagcaccatttgttgaaaatg
ctgtctttttccactggatggttttagctcccttgtcaaagatcaagtga
ccataggtgtctgggttcatccctgggtcttcaattctattccattggtg
tacttgtttgttgctataccagtaccatgcagtttttatcacaattgctc
tgtagtaaagctttaagtcaggcatggtgattccaccagaggttctttta
tacttgagaagagttttttgctatcctaggttttttgttattccagatga
atctgcagattgccctttctatttcgttgaagaattgatttggaattttg
atggggattgcactgaatctgtagattgcttttggcaatatagccatttt
tactatattgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatattctttaatttctttcttcagagacttgaagttcttatcatac
agatctctcacttcctttgttcgagtcacaccaacgtattttatatc
gaattcaacatacaagcctatatgacacacatattcaattcataaggttt
cccaaagcttctgattactttgcaagtttctaacattacaaatttcgcaa
acatatattagaaacgctagttagacgtttttcgtaatttttccatgaca
tgaatctttcttgtttaacatttatttttttctacaaacatgaaagtctt
taatcacatatcatcttcaatctttgggtatttaatggaagaaatacata
aaatatcccagccaacatggtgattcatctaattgatagtgctatctgtt
actgacctcctaagctagacctcacagcatattatgaaccaagtaatagt
gcggctgctactaatatcaattttaagggtaacaatattaagagttagct
ccctttcaatctttgggagtagcagtcatgcctattaaagtgagtgaatt
tttattatgtttattttaagtagactcttttttcatgcattatatcctga
ttacagttctctcatttcctcctatctcctcctcaccctccatattccat
ccattttggtctctcagaagaacagaagatgtttctaagagattacaacc
aaaaataaccaaataaaacataataaaataagcaaagacttttatatgaa
aaatggacaatggcaatctaacaggagaaaaatgatctcaagaccactca
aaagaataaaagagccattagttctcatagtcaagagtctcatagaatta
ctaagctaatagctataatatatgcagtggaggacatgatgcagacccag
ataggccttgtctttgctgcttcagtttatgagcttatatataccttgct
tagatgacttggaagcaaagttcttctgctgtccttcatatcttcttact
tgtacaatttttttcttcctctctctgtaggattccataagctatggatg
atagaagagacttctcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059228_41059737
seq2: B6Ng01-145I18.b_46_554 (reverse)

seq1  ACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGG  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGG  50

seq1  AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATC  100
       ||||||||||||||||||||||||||||||| |||||||||  ||||||
seq2  -AAAAAGACAGCATTTTCAACAAATGGTGCTGTCACAACTGGCCGTTATC  99

seq1  ATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCA  150
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  ATGTAGAAGAATACGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCA  149

seq1  AATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTT  200
      ||||||||||||| ||||||| ||||||||| ||||||||||||||||||
seq2  AATCTAAGTGGATTAAGGAACTCCACATAAATCCAGAGACACTGAAACTT  199

seq1  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAA  250
      ||  ||||||||||||||||||||||||||||||||| || |||||||||
seq2  ATTAAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGGGGAAAA  249

seq1  ATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACA  300
      | | |||||| ||||||||||||||||||||||||||| ||||||  |||
seq2  A-TACTGCATTGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCAACA  298

seq1  AATGGGACCTCATGAAA-CTGCAAAGCTTCTGCAAGGCAAAAGACACCGT  349
      |||| |||||||| |||  |||||||||||||||||||||||| |||| |
seq2  AATGAGACCTCATAAAAGTTGCAAAGCTTCTGCAAGGCAAAAGGCACCAT  348

seq1  CAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCTATC  398
      |||||||||||||||  ||| |||||||||||||||||||||||||||||
seq2  CAATAAGACAAAAAGACCACTAACAGATTGGGAAAGGATCTTTACCTATC  398

seq1  CTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAG  448
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAT  448

seq1  GTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCT  498
      ||||| |||||||||||||||||||||| | |||||||||||||||||||
seq2  GTGGACTCCAGAAAATCAAATAACCCCACT-AAAAATGGGGCTCAGAGCT  497

seq1  AAACAAAGAATT  510
      ||||||||||||
seq2  AAACAAAGAATT  509

seq1: chr16_61449391_61449983
seq2: B6Ng01-145I18.g_67_659 (reverse)

seq1  ATCTCTTAGAAACATCTTCTGTTCTTCTGAGAGACCAAAATGGATGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAGAAACATCTTCTGTTCTTCTGAGAGACCAAAATGGATGGAAT  50

seq1  ATGGAGGGTGAGGAGGAGATAGGAGGAAATGAGAGAACTGTAATCAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGTGAGGAGGAGATAGGAGGAAATGAGAGAACTGTAATCAGGAT  100

seq1  ATAATGCATGAAAAAAGAGTCTACTTAAAATAAACATAATAAAAATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCATGAAAAAAGAGTCTACTTAAAATAAACATAATAAAAATTCAC  150

seq1  TCACTTTAATAGGCATGACTGCTACTCCCAAAGATTGAAAGGGAGCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAATAGGCATGACTGCTACTCCCAAAGATTGAAAGGGAGCTAAC  200

seq1  TCTTAATATTGTTACCCTTAAAATTGATATTAGTAGCAGCCGCACTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATATTGTTACCCTTAAAATTGATATTAGTAGCAGCCGCACTATTA  250

seq1  CTTGGTTCATAATATGCTGTGAGGTCTAGCTTAGGAGGTCAGTAACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCATAATATGCTGTGAGGTCTAGCTTAGGAGGTCAGTAACAGAT  300

seq1  AGCACTATCAATTAGATGAATCACCATGTTGGCTGGGATATTTTATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATCAATTAGATGAATCACCATGTTGGCTGGGATATTTTATGTAT  350

seq1  TTCTTCCATTAAATACCCAAAGATTGAAGATGATATGTGATTAAAGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATTAAATACCCAAAGATTGAAGATGATATGTGATTAAAGACTT  400

seq1  TCATGTTTGTAGAAAAAAATAAATGTTAAACAAGAAAGATTCATGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTGTAGAAAAAAATAAATGTTAAACAAGAAAGATTCATGTCATG  450

seq1  GAAAAATTACGAAAAACGTCTAACTAGCGTTTCTAATATATGTTTGCGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTACGAAAAACGTCTAACTAGCGTTTCTAATATATGTTTGCGAA  500

seq1  ATTTGTAATGTTAGAAACTTGCAAAGTAATCAGAAGCTTTGGGAAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAATGTTAGAAACTTGCAAAGTAATCAGAAGCTTTGGGAAACCTT  550

seq1  ATGAATTGAATATGTGTGTCATATAGGCTTGTATGTTGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGAATATGTGTGTCATATAGGCTTGTATGTTGAATTC  593