BAC Information

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BAC

Clone NameB6Ng01-146J01
Chromosome16 (Build37)
Map Location 70,198,607 - 70,359,813
singlet/doubletdoublet
Overlap geneEG664930, Gbe1
Upstream geneSpeer2
Downstream geneD16Ertd519e, LOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146J01.bB6Ng01-146J01.g
ACCDH943677DH943678
length1,138298
definitionDH943677|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J01, 5' end.DH943678|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,198,607 - 70,199,747)(70,359,516 - 70,359,813)
sequence
gaattccttcttggtgctcactcttattcctatatcattgtttttaactt
tttattccctctatactatttatcagtaccttaatatttcatagctgttt
cttcctctatgtccattgaaattcaagcttcatgagacattatacttgtc
tctttgacagaatctctaggaaacggagctgctacttcttcagtcactta
cccaccacacatcggctgaatgaatgcatgctagcaaatgaactgcactc
cttctatttaaaggcaggcagattataagtcacatcattgttgaaaatag
actagaattaataggcaaagtcaagattatgatgactggctgtgatcaag
accgtctaggctgatggagtgaagaccctttaaagtacccagtctctttg
gcttttgctttctagcaccactactgaaaagcaacattttataacatttg
gaccctccatggactacaaagtagatcggctctacacagaaccagccatt
attggttatcctaaatctcctagcctgaaattctgtttaataattattat
ctgcttaatatttgttatgaactaggatacttaaaaaacactttcagtgt
ttaagtaaaaccatcacctgtggtaggggttttaatcaaacatttattta
aaaaaaaagacaacaacttatttgaaagctaatattgctgatgcctgttc
tatatttggcatgtactaatattgaaattgtaacttataaagtagaaagt
ccttttctataaatacaccagagaattaaatgagaatccctgtcacaatg
tcatgtacaaaagcacttttgtttgttctatataaaggaggtgtgaagca
aagcacagagagcaaaaagtcatgtcccgtatgtgaagtgtgttcctgaa
taaataccatgtcacgaactgtcatgttttaagtcttacttctaaatata
acgttcagttcctttgtggagttcagtgacttgtgatcttttcaaagtgt
aactgtctcacatctttttgaggttggtaccctctctttatcctataaag
ttatttacataaattttaggaaaatcaactagtgggattaatggttgatt
tgaattcattattaacttggcttcatcatgggatggta
aaatataactaaagacctaaagaatgaaagataaatggctcagtgagaaa
aatctgcctgctacaaactaactgccctgagtttgaaccctgaaacctac
atgatgaaaggagaggttgaatgtcagatgtgttaagtcctgtacacaca
caggcaaactaaataaatgtagaaaatgaaaagaaaaaagaaagaggagt
gtagctagaaaataattgatgaattacaatagccaaaattataatttgaa
aagaggaaaactgtttggatttctgtgttttggggggcgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_70198607_70199747
seq2: B6Ng01-146J01.b_45_1182

seq1  GAATTCCTTCTTGGTGCTCACTCTTATT-TTATATCATTGTTTTTAACTT  49
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCCTTCTTGGTGCTCACTCTTATTCCTATATCATTGTTTTTAACTT  50

seq1  TTTATTCCCTCTATACTATTTATCAGTACCTTAATATTTCATAGCTGTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCTCTATACTATTTATCAGTACCTTAATATTTCATAGCTGTTT  100

seq1  CTTCCTCTATGTCCATTGAAATTCAAGCTTCATGAGACATTATACTTGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTATGTCCATTGAAATTCAAGCTTCATGAGACATTATACTTGTC  150

seq1  TCTTTGACAGAATCTCTAGGAAACGGAGCTGCTACTTCTTCAGTCACTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACAGAATCTCTAGGAAACGGAGCTGCTACTTCTTCAGTCACTTA  200

seq1  CCCACCACACATCGGCTGAATGAATGCATGCTAGCAAATGAACTGCACTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACACATCGGCTGAATGAATGCATGCTAGCAAATGAACTGCACTC  250

seq1  CTTCTATTTAAAGGCAGGCAGATTATAAGTCACATCATTGTTGAAAATAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTTAAAGGCAGGCAGATTATAAGTCACATCATTGTTGAAAATAG  300

seq1  ACTAGAATTAATAGGCAAAGTCAAGATTATGATGACTGGCTGTGATCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATTAATAGGCAAAGTCAAGATTATGATGACTGGCTGTGATCAAG  350

seq1  ACCGTCTAGGCTGATGGAGTGAAGACCCTTTAAAGTACCCAGTCTCTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTAGGCTGATGGAGTGAAGACCCTTTAAAGTACCCAGTCTCTTTG  400

seq1  GCTTTTGCTTTCTAGCACCACTACTGAAAAGCAACATTTTATAACATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTTTCTAGCACCACTACTGAAAAGCAACATTTTATAACATTTG  450

seq1  GACCCTCCATGGACTACAAAGTAGATCGGCTCTACACAGAACCAGCCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCATGGACTACAAAGTAGATCGGCTCTACACAGAACCAGCCATT  500

seq1  ATTGGTTATCCTAAATCTCCTAGCCTGAAATTCTGTTTAATAATTATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTATCCTAAATCTCCTAGCCTGAAATTCTGTTTAATAATTATTAT  550

seq1  CTGCTTAATATTTGTTATGAACTAGGATACTTAAAAAACACTTTCAGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAATATTTGTTATGAACTAGGATACTTAAAAAACACTTTCAGTGT  600

seq1  TTAAGTAAAACCATCACCTGTGGTAGGGGTTTTAATCAAACATTTATTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAAAACCATCACCTGTGGTAGGGGTTTTAATCAAACATTTATTTA  650

seq1  AAAAAAAAGACAACAACTTATTTGAAAGCTAATATTGCTGATGCCTGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGACAACAACTTATTTGAAAGCTAATATTGCTGATGCCTGTTC  700

seq1  TATATTTGGCATGTACTAATATTGAAATTGTAACTTATAAAGTAGAAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGGCATGTACTAATATTGAAATTGTAACTTATAAAGTAGAAAGT  750

seq1  CCTTTTCTATAAATACACCAGAGAATTAAATGAGAATCCCTGTCACAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTATAAATACACCAGAGAATTAAATGAGAATCCCTGTCACAATG  800

seq1  TCATGTACAAAAGCACTTTTGTTTGTTCTATATAAAGGAGGTGTGAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACAAAAGCACTTTTGTTTGTTCTATATAAAGGAGGTGTGAAGCA  850

seq1  AAGCACAGAGAGCAAAAAGTCATGTCCCGTATGTGAAGTGTGTTCCTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGAGAGCAAAAAGTCATGTCCCGTATGTGAAGTGTGTTCCTGAA  900

seq1  TAAATACCATGTCACGAACTGTCATGTTTTAAGTC-TACTTCTAAATATA  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAATACCATGTCACGAACTGTCATGTTTTAAGTCTTACTTCTAAATATA  950

seq1  ACGTTCAGTTCCTTTGT-GAGTTCAGTGACTTGTGATCTTTTCAAAGTGT  997
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACGTTCAGTTCCTTTGTGGAGTTCAGTGACTTGTGATCTTTTCAAAGTGT  1000

seq1  AACTGTCTCACATCTTTTTGAGGTTTGTAACCCTCTCTTTATTCCTATAA  1047
      ||||||||||||||||||||||||| || |||||||||||| |||||| |
seq2  AACTGTCTCACATCTTTTTGAGGTTGGT-ACCCTCTCTTTA-TCCTAT-A  1047

seq1  AATTTATTTACATAAAATTTTAAGAAAAATCAACTAGTGGATTTAAT-GT  1096
      || |||||||||||||  ||| || |||||||||||||||  ||||| ||
seq2  AAGTTATTTACATAAA--TTTTAGGAAAATCAACTAGTGGGATTAATGGT  1095

seq1  TGATTTGATTGTATATATTTAACTTGCTTTCATCATTGGATGGTA  1141
      |||||||| |  || || ||||||||  |||||||| ||||||||
seq2  TGATTTGAATTCAT-TA-TTAACTTGGCTTCATCATGGGATGGTA  1138

seq1: chr16_70359516_70359813
seq2: B6Ng01-146J01.g_75_372 (reverse)

seq1  CCCCCCCCCCGCCCCCCAAAACACAGAAATCCAAACAGTTTTCCTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCGCCCCCCAAAACACAGAAATCCAAACAGTTTTCCTCTTTT  50

seq1  CAAATTATAATTTTGGCTATTGTAATTCATCAATTATTTTCTAGCTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATAATTTTGGCTATTGTAATTCATCAATTATTTTCTAGCTACAC  100

seq1  TCCTCTTTCTTTTTTCTTTTCATTTTCTACATTTATTTAGTTTGCCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCTTTTTTCTTTTCATTTTCTACATTTATTTAGTTTGCCTGTG  150

seq1  TGTGTACAGGACTTAACACATCTGACATTCAACCTCTCCTTTCATCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAGGACTTAACACATCTGACATTCAACCTCTCCTTTCATCATGT  200

seq1  AGGTTTCAGGGTTCAAACTCAGGGCAGTTAGTTTGTAGCAGGCAGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAGGGTTCAAACTCAGGGCAGTTAGTTTGTAGCAGGCAGATTTT  250

seq1  TCTCACTGAGCCATTTATCTTTCATTCTTTAGGTCTTTAGTTATATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGAGCCATTTATCTTTCATTCTTTAGGTCTTTAGTTATATTT  298