BAC Information

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BAC

Clone NameB6Ng01-146J12
Chromosome16 (Build37)
Map Location 41,497,572 - 41,662,142
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146J12.bB6Ng01-146J12.g
ACCDH943697DH943698
length1,143246
definitionDH943697|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J12, 5' end.DH943698|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,497,572 - 41,498,723)(41,661,897 - 41,662,142)
sequence
gaattccaaggaagaactgagaaaggttgtgaggaggaggctttgtgatt
aacccggaggtcacattctgaagtctctttgtcttccaaacttcaaaact
tgtctcgatttaccttatataaggctttgaaacagtgtcatagcctggaa
aacacagtccctcatttgttgagatatgtgcagctcctacataaggtccc
acaaaggatgagggacactaggttgatggccataaagtattgacaagaaa
caagctaatttaggaaaagcatttcttaactccttgaaatggtatccatg
gctaattggtcactttccatgaagactcattcgacttcaactctatggaa
gaaacgtactcgatcgtactgaggcctgctgtatattcccctttatgtct
tcattgatgtgcttacaagagtgagttgcttgaagtcagttcatgatgaa
gttcctgtccattcattcatggagtacgagtcttgctgtgacatgctcta
aatccagcagaggatactagtactatcttgatgagtttctctaccacttg
ggatatctgtcagtttctaaatctggtagtttctgaacaaccccaaactt
ggaaagacacatcaaaaaaaaataataataaccttttttttttaatctgg
gcatttcgaacaggtcaatgatgcctttctcaagagatgaatttattatt
ttactgaaaattaatgcaattgccttaaattaatgaagtgtccctctatt
tgaagaagcacaaaagggaatagccctttataaaagctttatttttaagc
gtgtgttcttttatcagcctatgggcaaataataattgtttaaaggatag
aaaagcagaaaatgttgtaggaacagagtgctctctctgtggggctgaac
ttcagatttcggggagagaaatgacctagaatcccaaaaagttgaaacgt
tcccaggaggaaccaccacttaggattcttttcctgatgtgcccggcttc
tcatccctgagaaatgctccggcctatgtgaattttgtaagtcatgtgga
gaagcatgaagaaatggatctgttcctcaatcatgtcactcgtgctttat
tcactccagaaatggatgcaaacaagaccttataaagaccaaa
cagaggatctgggaggagtaggaggaggtgaaactataattaggatatat
tatgtgattaaaaaatatctattttcaataaaagaagaaaagtatgtatc
actggaaaacaggggtgataccttttccctctagagttatcacagcctag
caagtagcaaagccatcttgtattagtgaatgaattagtgagtgaataaa
ggaatgaattagtgagtgaataagaggatgggatatggatgaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41497572_41498723
seq2: B6Ng01-146J12.b_47_1189

seq1  GAATTCCAAGGAAGAACTGAGAAAGGTTGTGAGGAGGAGGCTTTGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAAGAACTGAGAAAGGTTGTGAGGAGGAGGCTTTGTGATT  50

seq1  AACCCGGAGGTCACATTCTGAAGTCTCTTTGTCTTCCAAACTTCAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGGAGGTCACATTCTGAAGTCTCTTTGTCTTCCAAACTTCAAAACT  100

seq1  TGTCTCGATTTACCTTATATAAGGCTTTGAAACAGTGTCATAGCCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGATTTACCTTATATAAGGCTTTGAAACAGTGTCATAGCCTGGAA  150

seq1  AACACAGTCCCTCATTTGTTGAGATATGTGCAGCTCCTACATAAGGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTCCCTCATTTGTTGAGATATGTGCAGCTCCTACATAAGGTCCC  200

seq1  ACAAAGGATGAGGGACACTAGGTTGATGGCCATAAAGTATTGACAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATGAGGGACACTAGGTTGATGGCCATAAAGTATTGACAAGAAA  250

seq1  CAAGCTAATTTAGGAAAAGCATTTCTTAACTCCTTGAAATGGTATCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAATTTAGGAAAAGCATTTCTTAACTCCTTGAAATGGTATCCATG  300

seq1  GCTAATTGGTCACTTTCCATGAAGACTCATTCGACTTCAACTCTATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGGTCACTTTCCATGAAGACTCATTCGACTTCAACTCTATGGAA  350

seq1  GAAACGTACTCGATCGTACTGAGGCCTGCTGTATATTCCCCTTTATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTACTCGATCGTACTGAGGCCTGCTGTATATTCCCCTTTATGTCT  400

seq1  TCATTGATGTGCTTACAAGAGTGAGTTGCTTGAAGTCAGTTCATGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATGTGCTTACAAGAGTGAGTTGCTTGAAGTCAGTTCATGATGAA  450

seq1  GTTCCTGTCCATTCATTCATGGAGTACGAGTCTTGCTGTGACATGCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTCCATTCATTCATGGAGTACGAGTCTTGCTGTGACATGCTCTA  500

seq1  AATCCAGCAGAGGATACTAGTACTATCTTGATGAGTTTCTCTACCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAGAGGATACTAGTACTATCTTGATGAGTTTCTCTACCACTTG  550

seq1  GGATATCTGTCAGTTTCTAAATCTGGTAGTTTCTGAACAACCCCAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCTGTCAGTTTCTAAATCTGGTAGTTTCTGAACAACCCCAAACTT  600

seq1  GGAAAGACACATCAAAAAAAAATAATAATAACCTTTTTTTTTTAATCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACACATCAAAAAAAAATAATAATAACCTTTTTTTTTTAATCTGG  650

seq1  GCATTTCGAACAGGTCAATGATGCCTTTCTCAAGAGATGAATTTATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCGAACAGGTCAATGATGCCTTTCTCAAGAGATGAATTTATTATT  700

seq1  TTACTGAAAATTAATGCAATTGCCTTAAATTAATGAAGTGTCCCTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAATTAATGCAATTGCCTTAAATTAATGAAGTGTCCCTCTATT  750

seq1  TGAAGAAGCACAAAAGGGAATAGCCCTTTATAAAAGCTTTATTTTTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGCACAAAAGGGAATAGCCCTTTATAAAAGCTTTATTTTTAAGC  800

seq1  GTGTGTTCTTTTATCAGCCTATGGGCAAATAATAATTGTTT-AAGGATAG  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGTGTTCTTTTATCAGCCTATGGGCAAATAATAATTGTTTAAAGGATAG  850

seq1  AAAAGCAGAAAATGTTGTAGGAACAGAGTGCTCTCTCTGTGGGGCTGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAAAATGTTGTAGGAACAGAGTGCTCTCTCTGTGGGGCTGAAC  900

seq1  TTCAGATTTCGGGGAGAGAAATGACCTAGAATCCCAAAAAGTTGAAACGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTCGGGGAGAGAAATGACCTAGAATCCCAAAAAGTTGAAACGT  950

seq1  TCCCAGGAGGAACCAACCACTTAGGGATTTCTTTTCCTGATGTGCACGGC  999
      |||||||||||||| ||||||||||   ||||||||||||||||| ||||
seq2  TCCCAGGAGGAACC-ACCACTTAGG--ATTCTTTTCCTGATGTGCCCGGC  997

seq1  TTCTCATCCCTGAGACATGCT-CGGCCTATGTGGAAATATGTAAGTCATG  1048
      ||||||||||||||| ||||| |||||||||| ||| | |||||||||||
seq2  TTCTCATCCCTGAGAAATGCTCCGGCCTATGT-GAATTTTGTAAGTCATG  1046

seq1  TGGAGAAGCATGAAAGAAATGGGATCTGTCCTTCAATCATGTCACTCGGT  1098
      |||||||||||| ||||||| |||||||| | ||||||||||||||| ||
seq2  TGGAGAAGCATG-AAGAAAT-GGATCTGTTCCTCAATCATGTCACTC-GT  1093

seq1  GCTTTATTTCACTTCCAGAAATGGAGGGGAAACAAGACCTTATAAAAGAC  1148
      |||||| ||||| ||||||||||||  | |||||||||||||| ||||||
seq2  GCTTTA-TTCAC-TCCAGAAATGGA-TGCAAACAAGACCTTAT-AAAGAC  1139

seq1  CAAA  1152
      ||||
seq2  CAAA  1143

seq1: chr16_41661897_41662142
seq2: B6Ng01-146J12.g_75_320 (reverse)

seq1  TCCCTCATCCATATCCCATCCTCTTATTCACTCACTAATTCATTCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCCATATCCCATCCTCTTATTCACTCACTAATTCATTCCTTTA  50

seq1  TTCACTCACTAATTCATTCACTAATACAAGATGGCTTTGCTACTTGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCACTAATTCATTCACTAATACAAGATGGCTTTGCTACTTGCTAG  100

seq1  GCTGTGATAACTCTAGAGGGAAAAGGTATCACCCCTGTTTTCCAGTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATAACTCTAGAGGGAAAAGGTATCACCCCTGTTTTCCAGTGATA  150

seq1  CATACTTTTCTTCTTTTATTGAAAATAGATATTTTTTAATCACATAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTTCTTCTTTTATTGAAAATAGATATTTTTTAATCACATAATAT  200

seq1  ATCCTAATTATAGTTTCACCTCCTCCTACTCCTCCCAGATCCTCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATTATAGTTTCACCTCCTCCTACTCCTCCCAGATCCTCTG  246