BAC Information

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BAC

Clone NameB6Ng01-146J20
Chromosome16 (Build37)
Map Location 19,656,376 - 19,657,446
singlet/doubletsinglet
Overlap geneLamp3
Upstream geneLOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444
Downstream geneB3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146J20.bB6Ng01-146J20.g
ACCDH943708DH943709
length1,1501,066
definitionDH943708|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J20, 5' end.DH943709|Mus musculus domesticus DNA, BAC clone: B6Ng01-146J20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactgaagggtggagaagcacctgaaaaaatg
ttcaacatccttaataatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggttaagatcttttaaaaattcaggtga
cagtagatgctggcaaggatgtggagaaaaaggaactctcctccattgct
ggtgggattgcaagcttctggaaatcagtccgcagttcctcaaaaattgg
acatagtactactggaagatccagcaattcctctcctgggcatataccca
gaagatgccccaacgggtaataaggacacatgctccactatgttcatagc
agccttatttataataaccagaagctggaaataatccagatgttcctcaa
cagaggaatggatacagaaaatgtggttcatttacacaatggagtactac
tcagctattaaaaacaatgaatttatgaaaatcttgggcaaatggatgga
tggaggatattatcctgagtgaggtaacccaatcacaaaagaagtcactt
gatatgcactcactgataattggatatcagcccagaaacttagaatattc
aagatacaatttgcaaaacacaagaaaatcaagaaggaagaccaacatgt
ggatacttcattcctccttagaatagggaacaaaatacccatggaaggag
ttacagagacaaagttaggagctacaacaaaaggatggaccatccagaga
ctaccccacccgggcatccatcccataacaaccaccaaacgcagacacta
tttgcatatccgagcaagattttgctgaaaggcccctgatatagctgtct
cgtgtgaggctatgccagtgcctggcaacacagaagtgtatgctcactgt
catctataagatggaacacagggcccccattggagaaactagagaaagca
cccaaggagctgaaggggtctgcaaccctatagaggacacaatatgacta
accagtaccccatgagctcgtgtctctagctgcatacgtagcagagatgg
cctagtttgcatcattgaaggtgagcctttgctgccaagtttaatgccca
tacaggcacgtctgaaaccatggagtatgaatgggtgggctaggggacag

gaattctcagtggaatgtggagtttgggaaaacagagaaaataaatgaag
aactagacccatatcttagtcataaatgatcagatgtttgttaagttttg
gaatgaaccaatccttctatagtttctatagcctgggagtgattcaagga
tggcaattataggacccccaaaattaaaatgtatgcatccaagaaataat
atttccaatgaattatttaatttggcagtaaaaaatacttagaggatgtc
ttatttacagtttctgttgtgaagagactccatgaccacagcaactctta
taaaggaagcattacatgtcagaagtttatttagttcattatcattatga
tgagaagcatgacaagcattcaggtagagagggagctggagagctagctc
tgggttctacatctggattagcaagtagcaggaagaaaaagagccactgg
tcctggtttgagcattagacacctcaaagcccacccctagttacctattt
cctccaaaaaggccatctgtactccaacaaggctacacctcctaaaggtg
gctctccctacgagcctatggaagccattttcattcaaacctccccacag
aattataacatatatctcattatcttgttattgctacaaattctttttta
ctagagcagaaatctacaactgaaaaatattaattaatattttctatgtg
aaaaataatgttcttttaattaaaataaaataagaagaaaatgttaaata
aaatgaggggtcagaatgatggttcaatgattaagagcactggctgttct
ttcagggcatccagttttgttccaaggatatacatggtactcataccatt
ttgtaactacagttccagaggaaataactccatcttctggtctccatggg
taaccaggtatacaaattgtaagcagacatacatacaggcaaaatatccc
cacaaatgaatagaccaaaataaaatagtagttttgtatacacctttata
aggaattatatcatttctcccttttccttctttccaccactacctcatgc
accttccctggctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19656376_19657446
seq2: B6Ng01-146J20.g_68_1133

seq1  GAATTCTCAGTGGAATGTGGAGTTTGGGAAAACAGAGAAAATAAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGGAATGTGGAGTTTGGGAAAACAGAGAAAATAAATGAAG  50

seq1  AACTAGACCCATATCTTAGTCATAAATGATCAGATGTTTGTTAAGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGACCCATATCTTAGTCATAAATGATCAGATGTTTGTTAAGTTTTG  100

seq1  GAATGAACCAATCCTTCTATAGTTTCTATAGCCTGGGAGTGATTCAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACCAATCCTTCTATAGTTTCTATAGCCTGGGAGTGATTCAAGGA  150

seq1  TGGCAATTATAGGACCCCCAAAATTAAAATGTATGCATCCAAGAAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTATAGGACCCCCAAAATTAAAATGTATGCATCCAAGAAATAAT  200

seq1  ATTTCCAATGAATTATTTAATTTGGCAGTAAAAAATACTTAGAGGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAATGAATTATTTAATTTGGCAGTAAAAAATACTTAGAGGATGTC  250

seq1  TTATTTACAGTTTCTGTTGTGAAGAGACTCCATGACCACAGCAACTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAGTTTCTGTTGTGAAGAGACTCCATGACCACAGCAACTCTTA  300

seq1  TAAAGGAAGCATTACATGTCAGAAGTTTATTTAGTTCATTATCATTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGCATTACATGTCAGAAGTTTATTTAGTTCATTATCATTATGA  350

seq1  TGAGAAGCATGACAAGCATTCAGGTAGAGAGGGAGCTGGAGAGCTAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCATGACAAGCATTCAGGTAGAGAGGGAGCTGGAGAGCTAGCTC  400

seq1  TGGGTTCTACATCTGGATTAGCAAGTAGCAGGAAGAAAAAGAGCCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTACATCTGGATTAGCAAGTAGCAGGAAGAAAAAGAGCCACTGG  450

seq1  TCCTGGTTTGAGCATTAGACACCTCAAAGCCCACCCCTAGTTACCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTGAGCATTAGACACCTCAAAGCCCACCCCTAGTTACCTATTT  500

seq1  CCTCCAAAAAGGCCATCTGTACTCCAACAAGGCTACACCTCCTAAAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAAAGGCCATCTGTACTCCAACAAGGCTACACCTCCTAAAGGTG  550

seq1  GCTCTCCCTACGAGCCTATGGAAGCCATTTTCATTCAAACCTCCCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTACGAGCCTATGGAAGCCATTTTCATTCAAACCTCCCCACAG  600

seq1  AATTATAACATATATCTCATTATCTTGTTATTGCTACAAATTCTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAACATATATCTCATTATCTTGTTATTGCTACAAATTCTTTTTTA  650

seq1  CTAGAGCAGAAATCTACAACTGAAAAATATTAATTAATATTTTCTATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAGAAATCTACAACTGAAAAATATTAATTAATATTTTCTATGTG  700

seq1  AAAAATAATGTTCTTTTAATTAAAATAAAATAAGAAGAAAATGTTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAATAATGTTCTTTTAATTAAAATAAAATAAGAAGAAAATGTTAAAT-  749

seq1  AAAATGAGGGGTCAGAATGATGGTTCAATGATTAAGAGCACTGGCTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGGGTCAGAATGATGGTTCAATGATTAAGAGCACTGGCTGTTC  799

seq1  TTTCAGGGCATCCAGTTTTGTTCCAAGGATATACATGGTACTTCATACCA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCAGGGCATCCAGTTTTGTTCCAAGGATATACATGGTAC-TCATACCA  848

seq1  -TTTGTAACTACAGTTCCAGAGGATATAACTCCATCTTCTGGTCTCCAT-  898
       ||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TTTTGTAACTACAGTTCCAGAGGAAATAACTCCATCTTCTGGTCTCCATG  898

seq1  GGTAACCAGGTATACAAATTGTAAGCAGACATACATACAGGCAAAATATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCAGGTATACAAATTGTAAGCAGACATACATACAGGCAAAATATC  948

seq1  CCCACAAATGAAATAGAACAAAATAAAATAGTAGTTTTGTAATACAACAT  998
      |||||||||| |||||| |||||||||||||||||||||| ||||| |  
seq2  CCCACAAATG-AATAGACCAAAATAAAATAGTAGTTTTGT-ATACACC--  994

seq1  TTTATAATGTAATTATATCATTTTCTCTCTTTTCTTTCTTTCCACCAACT  1048
      ||||||| | |||||||||| |||||| |||||| ||||||||||| |||
seq2  TTTATAA-GGAATTATATCA-TTTCTCCCTTTTCCTTCTTTCCACC-ACT  1041

seq1  A-CTCATGCA-CTTTCCTTGCTCTC  1071
      | |||||||| ||| ||| ||||||
seq2  ACCTCATGCACCTTCCCTGGCTCTC  1066