BAC Information

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BAC

Clone NameB6Ng01-146N11
Chromosome16 (Build37)
Map Location 67,790,919 - 67,792,005
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm2, 9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146N11.bB6Ng01-146N11.g
ACCDH943879DH943880
length1,2411,088
definitionDH943879|Mus musculus domesticus DNA, BAC clone: B6Ng01-146N11, 5' end.DH943880|Mus musculus domesticus DNA, BAC clone: B6Ng01-146N11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagagaactgttgctctttagtctgtgtctgaatcctgaagatg
tatgttctaacaccagcaaatgaacgtctcagcaatagggcaggcaggtt
tgccagcacaaatgagggcacagagacagaaagaaagcaaagctctcttc
ttccatgcggttttatgtgggctgccttcagaaagtgtatcccccatcag
ggaggggtctttcaaccttcaatgatccagatttcaggtgggtcttcaca
ctcaaaagagccaatccaaaagaacaaaacataaatagaacccctaaagg
tatgctcagctctagtcaagttgacaactaagaacagccatcatccatca
cctatttgtatattttggatacaaccaaggctaggtgactcattgattct
gaaacacatagaattcttttcttcaaaaattatgaacccttcctagttat
gctttagaattaaaatcaactgctttgaagctcctgtatatgtcgatagc
tggatcattcttgaaccagcaatatgaccattggcatctaaatgtgaaat
taaagtttgtattgttgttatacttaatttatgttgcatggatatctgca
agggtagtaaaagggaaaatatttaatcataatgattcatgttgaagtta
ttccttggtcaatggactacagagggagtactgtatcaaaaggcatggga
ctattactaatcctgtatccctctccactagcgaccatgagtcattgggt
ctatacttaaaaatcatagttgagaaaagttttattattagctagtttct
ccacaatgggtataagttgctcagcccattatgtaaatatttaaaaatga
tttaatcaagcatttgctgccacagttgaacttccttactctgaatagag
ttaaaatatgcttggcattgctgtgatttggacaatgatataagcatgta
cagcagatggcttgatctctgctctaccacattatccataaaattagtag
cctttcttatcatttgtacacttattaaccaccatttttatttcccaaag
attgttcatttgcatgttaggatttggcaactctttccatggagataagc
aaactttcagcaatcttgtttatgatcctcactgaaccaaaccccaatag
tcttgatgaaggggagaaggaatacttgtcctgattttagcatggagata
attttagactattctacacacgttcagctttatcgggagta
gaattccacctggattttgaaaatccagaaaaatgcttcacccataatgg
cattcagtggatgttacataaatgagccaaagatggcctttgtatgttgg
cttctaagctgtttacttcacagcttgctgaggccagttacctcaaaagc
ctattgtggtgaatgcaaatttccacacaccaaactctttttaacatagc
tcagctaaggaggatttttaaccacgtatcctgtctgcatggcactgcgc
tcaaaactggcccaaagctacgcatcttaggatcagtctgaacatactaa
agacctcaagcttccatgcagattttggtattcgttttttctaattttct
ttctccatcaaaataagtaacaagagcaagggaatgagggaatatttagc
tttgcctcacacttacaagacatagtccatcacattgagcaagccatggc
agcatggaactgtaggcattgggcctcattttacacagagagaagaatcc
gagggatggaaaacatggttcctgtcttcttttacgtggtccaggaacag
agcctacattagggctttgtacctttattagcttaatctagaaatacctt
gactacctaccacacagtgctaaatcctctaaattgataatcaaggctgt
cacattgtgggattcagctatttccccatcattctgaatgacgttatcaa
gattaaagtctctctgacttcaattactacatttttcctgaagttccttg
attttcttttatctgaatagggaccgttcaacagtctgtttaaatagcag
tagaatgtgagagattgttctatgcacaaatgtcaaatggttgacctaat
taaatacgtgtataatattgtcaccttgttgtcaaacatatgaccttaat
cagccttgatatatacaataaatcccttatagcagagatatatgcttgga
gacaggacactttgagtaaattcagttagttcataaggatgtgactatcc
atctataccacaaattcattatagtatgtctaaacactgttatcataaga
aaaagagttttccataattttcatgtaataacatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_67790919_67792005
seq2: B6Ng01-146N11.g_70_1157 (reverse)

seq1  TTTCATGTTATTAACAATGAAAATTAT-GAAAACTCTTTT--CTATGATA  47
      |||||||||||||   ||||||||||| ||||||||||||   |||||||
seq2  TTTCATGTTATTA--CATGAAAATTATGGAAAACTCTTTTTCTTATGATA  48

seq1  ACAGTTGTTTAGACATACTAT-ATGATTTTGT-GTATAGATGGATAGTTC  95
      |||| |||||||||||||||| |||| ||||| |||||||||||||| ||
seq2  ACAG-TGTTTAGACATACTATAATGAATTTGTGGTATAGATGGATAG-TC  96

seq1  ACATTCTTATGAACTAACTGAATTTACTCAAAGTGTTCTGTCTCCAAGCA  145
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATCCTTATGAACTAACTGAATTTACTCAAAGTGTCCTGTCTCCAAGCA  146

seq1  TATATCTCTGCTATAAGGGATTTATTGTATATATCAAGGCTGATTAAGGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCTGCTATAAGGGATTTATTGTATATATCAAGGCTGATTAAGGT  196

seq1  CATATGTTTGACAACAAGGTGACAATATTATACACGTATTTAATTAGGTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTTGACAACAAGGTGACAATATTATACACGTATTTAATTAGGTC  246

seq1  AACCATTTGACATTTGTGCATAGAACAATCTCTCACATTCTACTGCTATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGACATTTGTGCATAGAACAATCTCTCACATTCTACTGCTATT  296

seq1  TAAACAGACTGTTGAACGGTCCCTATTCAGATAAAAGAAAATCAAGGAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGACTGTTGAACGGTCCCTATTCAGATAAAAGAAAATCAAGGAAC  346

seq1  TTCAGGAAAAATGTAGTAATTGAAGTCAGAGAGACTTTAATCTTGATAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAAAATGTAGTAATTGAAGTCAGAGAGACTTTAATCTTGATAAC  396

seq1  GTCATTCAGAATGATGGGGAAATAGCTGAATCCCACAATGTGACAGCCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCAGAATGATGGGGAAATAGCTGAATCCCACAATGTGACAGCCTT  446

seq1  GATTATCAATTTAGAGGATTTAGCACTGTGTGGTAGGTAGTCAAGGTATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCAATTTAGAGGATTTAGCACTGTGTGGTAGGTAGTCAAGGTATT  496

seq1  TCTAGATTAAGCTAATAAAGGTACAAAGCCCTAATGTAGGCTCTGTTCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTAAGCTAATAAAGGTACAAAGCCCTAATGTAGGCTCTGTTCCT  546

seq1  GGACCACGTAAAAGAAGACAGGAACCATGTTTTCCATCCCTCGGATTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACGTAAAAGAAGACAGGAACCATGTTTTCCATCCCTCGGATTCTT  596

seq1  CTCTCTGTGTAAAATGAGGCCCAATGCCTACAGTTCCATGCTGCCATGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTAAAATGAGGCCCAATGCCTACAGTTCCATGCTGCCATGGC  646

seq1  TTGCTCAATGTGATGGACTATGTCTTGTAAGTGTGAGGCAAAGCTAAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAATGTGATGGACTATGTCTTGTAAGTGTGAGGCAAAGCTAAATA  696

seq1  TTCCCTCATTCCCTTGCTCTTGTTACTTATTTTGATGGAGAAAGAAAATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCATTCCCTTGCTCTTGTTACTTATTTTGATGGAGAAAGAAAATT  746

seq1  AGAAAAAACGAATACCAAAATCTGCATGGAAGCTTGAGGTCTTTAGTATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACGAATACCAAAATCTGCATGGAAGCTTGAGGTCTTTAGTATG  796

seq1  TTCAGACTGATCCTAAGATGCGTAGCTTTGGGCCAGTTTTGAGCGCAGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTGATCCTAAGATGCGTAGCTTTGGGCCAGTTTTGAGCGCAGTG  846

seq1  CCATGCAGACAGGATACGTGGTTAAAAATCCTCCTTAGCTGAGCTATGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGACAGGATACGTGGTTAAAAATCCTCCTTAGCTGAGCTATGTT  896

seq1  AAAAAGAGTTTGGTGTGTGGAAATTTGCATTCACCACAATAGGCTTTTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGTTTGGTGTGTGGAAATTTGCATTCACCACAATAGGCTTTTGA  946

seq1  GGTAACTGGCCTCAGCAAGCTGTGAAGTAAACAGCTTAGAAGCCAACATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGGCCTCAGCAAGCTGTGAAGTAAACAGCTTAGAAGCCAACATA  996

seq1  CAAAGGCCATCTTTGGCTCATTTATGTAACATCCACTGAATGCCATTATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCATCTTTGGCTCATTTATGTAACATCCACTGAATGCCATTATG  1046

seq1  GGTGAAGCATTTTTCTGGATTTTCAAAATCCAGGTGGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGCATTTTTCTGGATTTTCAAAATCCAGGTGGAATTC  1088