BAC Information

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BAC

Clone NameB6Ng01-147C01
Chromosome16 (Build37)
Map Location 48,217,589 - 48,352,995
singlet/doubletdoublet
Overlap geneEG637273, Dppa4, Dppa2
Upstream geneLOC628776, EG667741, EG639644
Downstream geneEG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147C01.bB6Ng01-147C01.g
ACCDH944093DH944094
length9511,105
definitionDH944093|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C01, 5' end.DH944094|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,352,038 - 48,352,995)(48,217,589 - 48,218,707)
sequence
gaattcatttcagaattttgtgctttccacttgaaagagactatgcaaga
atcgccatgtttgtcatcaaattttaccttgctcacctattgccaaaacc
tcatgatacttaagacttagctaaccaatttaaaaaaaacaaaaaaacaa
aacctgtttgctatatcattagtgctatttcataaaatataccaggagga
atccgaggcatggtagatatttaccaacaacctactttttaactgggcag
tgtgctactcaatagggatttgctgttgggcaagtcctagtcctacacct
gaccaaaaaggtaggagcacaccaagcaattagactataggtgtttaaag
tccagtccactcatttaaatgtggaacttaaagattatagtggtgtaact
cagttatagagtgcatttctgacatttgccaagccctaggttcataccct
acctctgaaatataaggttagaaaaaagaaagcagcttcaaggatctaaa
tccaagtcacatagctgaaagatgagaaggtagagagactgggtaggaaa
aggttaaaaaaaaaaagtcaaccactcccttactttcgttttttaaacta
cttgatagatgcaaacttgagctggagaaggcagaaccctcatagttaag
aatgttaaatctagttaagaatgttaaatctgtggaaggggggggggtgc
tagacagatggctcagcggttaagagcaccaactgctcttccagaggtcc
tgagttcaattcccagcagtcacatggtggctcacaaccatctgtaatgg
gatctgatgctctcttctggtgtgtctgaagagagcaatgtatactcata
tacataaaataaataaataaatctaaaaaaaaagacaaagacaataatgg
aatcagacatgttggtttctggactagattatagacagatggctacaagt
g
gaattcctgtgaagttaatagctgtgactgacccataagttcaaaatgta
ctattactttgctgaccacatcataataacccaccatgggggcaagcaaa
gtgagtcactaggccaaagggttacttagtcactatacaaatcaaccaat
gcctgaaagagttacttgctacaccaatgagaaccatgttgctcaaatct
gccccttacaaaggtataaaaagtgtgttctttctttgttcttggtctct
cctctggcctgcatgctgggaggggagtccccaacatgttggatcaataa
aaatcctcatgcagtttgcagcgatggtggttgtctctgtattctttgtg
agtaagggtcttttgaggaactacaacaccttctgaaaatgtgaatccta
aaatatgtccaggagaattatcagatgcaggactttttaacaacctcccc
tttgcagatggaacaccaagaaaagccatcaccccataaggaatctattc
ttactttcagacagtcaaggtaatgaatgatttgataaaggtttttcatg
cattactaattttgatgataggagtcacatttgatcagcctagctaagtg
tccattgtcaagagcaacttaggtggagagaaatgtcttctcctactgcc
aaactgtcacttaaacccacttagaatttcctctgtgtctaaggttctct
tctcagtgtgcaattacctgtttcacaaaagtttgccccaaacacctcac
atccttgaagggaactccagtttgtagctactagagggatgaaaaaaaaa
aaaaaaggaaaggaaaggaaagggaagaaaagaaaactaattttaccaaa
ttgtttttctaaaagtttaactttgcatatataagaggatgagaaagaaa
aatgccccccaaaaaaacttatcattcaaatgagcatattgccccaaaga
tggactttcctaggtagctgggattaaaaacactagaaataaatttaaat
aatataaatactgacagggatgctaagaaaggcatcatattcaggatggg
cgactttctgcatttctcccgctctttctgttgtggagatggggcttgac
cctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48352038_48352995
seq2: B6Ng01-147C01.b_48_998 (reverse)

seq1  CACTTGTAGACAATCTAGTCTATAATCTAGTCCAGAAACCAACATGTCTG  50
      ||||||||| | |||| |||||||||||||||||||||||||||||||||
seq2  CACTTGTAG-CCATCT-GTCTATAATCTAGTCCAGAAACCAACATGTCTG  48

seq1  ATTCCATTTAATTGTCTTTTGTCTTTTTTTTTTAGATTTATTTATTTATT  100
      ||||||||  |||||| |||||| ||||||||||||||||||||||||||
seq2  ATTCCATT--ATTGTC-TTTGTC-TTTTTTTTTAGATTTATTTATTTATT  94

seq1  TTATGTATATGAGTATACCATTGCTCTCTTCAGACACACCAGAAGAGAGC  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTATGTATATGAGTATA-CATTGCTCTCTTCAGACACACCAGAAGAGAGC  143

seq1  ATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGACTGCTGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGACTGCTGGGAAT  193

seq1  TGAACTCAGGACCTCTGGAAGAGCAGTTGGTGCTCTTAACCGCTGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTCTGGAAGAGCAGTTGGTGCTCTTAACCGCTGAGCCA  243

seq1  TCTGTCTAGCACCCCCCCCCCTTCCACAGATTTAACATTCTTAACTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTAGCACCCCCCCCCCTTCCACAGATTTAACATTCTTAACTAGAT  293

seq1  TTAACATTCTTAACTATGAGGGTTCTGCCTTCTCCAGCTCAAGTTTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTCTTAACTATGAGGGTTCTGCCTTCTCCAGCTCAAGTTTGCAT  343

seq1  CTATCAAGTAGTTTAAAAAACGAAAGTAAGGGAGTGGTTGACTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAGTAGTTTAAAAAACGAAAGTAAGGGAGTGGTTGACTTTTTTTT  393

seq1  TTTAACCTTTTCCTACCCAGTCTCTCTACCTTCTCATCTTTCAGCTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTTTTCCTACCCAGTCTCTCTACCTTCTCATCTTTCAGCTATGT  443

seq1  GACTTGGATTTAGATCCTTGAAGCTGCTTTCTTTTTTCTAACCTTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGATTTAGATCCTTGAAGCTGCTTTCTTTTTTCTAACCTTATATT  493

seq1  TCAGAGGTAGGGTATGAACCTAGGGCTTGGCAAATGTCAGAAATGCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTAGGGTATGAACCTAGGGCTTGGCAAATGTCAGAAATGCACTC  543

seq1  TATAACTGAGTTACACCACTATAATCTTTAAGTTCCACATTTAAATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGAGTTACACCACTATAATCTTTAAGTTCCACATTTAAATGAGT  593

seq1  GGACTGGACTTTAAACACCTATAGTCTAATTGCTTGGTGTGCTCCTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGACTTTAAACACCTATAGTCTAATTGCTTGGTGTGCTCCTACCT  643

seq1  TTTTGGTCAGGTGTAGGACTAGGACTTGCCCAACAGCAAATCCCTATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCAGGTGTAGGACTAGGACTTGCCCAACAGCAAATCCCTATTGA  693

seq1  GTAGCACACTGCCCAGTTAAAAAGTAGGTTGTTGGTAAATATCTACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACACTGCCCAGTTAAAAAGTAGGTTGTTGGTAAATATCTACCATG  743

seq1  CCTCGGATTCCTCCTGGTATATTTTATGAAATAGCACTAATGATATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGATTCCTCCTGGTATATTTTATGAAATAGCACTAATGATATAGCA  793

seq1  AACAGGTTTTGTTTTTTTGTTTTTTTTAAATTGGTTAGCTAAGTCTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTTTTGTTTTTTTGTTTTTTTTAAATTGGTTAGCTAAGTCTTAAG  843

seq1  TATCATGAGGTTTTGGCAATAGGTGAGCAAGGTAAAATTTGATGACAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGAGGTTTTGGCAATAGGTGAGCAAGGTAAAATTTGATGACAAAC  893

seq1  ATGGCGATTCTTGCATAGTCTCTTTCAAGTGGAAAGCACAAAATTCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGATTCTTGCATAGTCTCTTTCAAGTGGAAAGCACAAAATTCTGAA  943

seq1  ATGAATTC  958
      ||||||||
seq2  ATGAATTC  951

seq1: chr16_48217589_48218707
seq2: B6Ng01-147C01.g_67_1171

seq1  GAATTCCTGTGAAGTTAATAGCTGTGACTGACCCATAAGTTCAAAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGAAGTTAATAGCTGTGACTGACCCATAAGTTCAAAATGTA  50

seq1  CTATTACTTTGCTGACCACATCATAATAACCCACCATGGGGGCAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTTTGCTGACCACATCATAATAACCCACCATGGGGGCAAGCAAA  100

seq1  GTGAGTCACTAGGCCAAAGGGTTACTTAGTCACTATACAAATCAACCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCACTAGGCCAAAGGGTTACTTAGTCACTATACAAATCAACCAAT  150

seq1  GCCTGAAAGAGTTACTTGCTACACCAATGAGAACCATGTTGCTCAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAGAGTTACTTGCTACACCAATGAGAACCATGTTGCTCAAATCT  200

seq1  GCCCCTTACAAAGGTATAAAAAGTGTGTTCTTTCTTTGTTCTTGGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTACAAAGGTATAAAAAGTGTGTTCTTTCTTTGTTCTTGGTCTCT  250

seq1  CCTCTGGCCTGCATGCTGGGAGGGGAGTCCCCAACATGTTGGATCAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCCTGCATGCTGGGAGGGGAGTCCCCAACATGTTGGATCAATAA  300

seq1  AAATCCTCATGCAGTTTGCAGCGATGGTGGTTGTCTCTGTATTCTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCATGCAGTTTGCAGCGATGGTGGTTGTCTCTGTATTCTTTGTG  350

seq1  AGTAAGGGTCTTTTGAGGAACTACAACACCTTCTGAAAATGTGAATCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGTCTTTTGAGGAACTACAACACCTTCTGAAAATGTGAATCCTA  400

seq1  AAATATGTCCAGGAGAATTATCAGATGCAGGACTTTTTAACAACCTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTCCAGGAGAATTATCAGATGCAGGACTTTTTAACAACCTCCCC  450

seq1  TTTGCAGATGGAACACCAAGAAAAGCCATCACCCCATAAGGAATCTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGATGGAACACCAAGAAAAGCCATCACCCCATAAGGAATCTATTC  500

seq1  TTACTTTCAGACAGTCAAGGTAATGAATGATTTGATAAAGGTTTTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCAGACAGTCAAGGTAATGAATGATTTGATAAAGGTTTTTCATG  550

seq1  CATTACTAATTTTGATGATAGGAGTCACATTTGATCAGCCTAGCTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTAATTTTGATGATAGGAGTCACATTTGATCAGCCTAGCTAAGTG  600

seq1  TCCATTGTCAAGAGCAACTTAGGTGGAGAGAAATGTCTTCTCCTACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCAAGAGCAACTTAGGTGGAGAGAAATGTCTTCTCCTACTGCC  650

seq1  AAACTGTCACTTAAACCCACTTAGAATTTCCTCTGTGTCTAAGGTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCACTTAAACCCACTTAGAATTTCCTCTGTGTCTAAGGTTCTCT  700

seq1  TCTCAGTGTGCAATTACCTGTTTCAC-AAAGTTTGCCCCAAACACCTCAC  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTCAGTGTGCAATTACCTGTTTCACAAAAGTTTGCCCCAAACACCTCAC  750

seq1  ATCCTTGAAGGGAACTCCAGTTTGTAGCTACTAGAGGGATG-AAAAAAAA  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCCTTGAAGGGAACTCCAGTTTGTAGCTACTAGAGGGATGAAAAAAAAA  800

seq1  AAAAAAGGAAAGGAAAGGAAAGGAAAGAAAAGAAAAACTAATTTTACCAA  848
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  AAAAAAGGAAAGGAAAGGAAAGGGAAGAAAAG-AAAACTAATTTTACCAA  849

seq1  ATTG-TTTTCTAAAAGTTTAACTTTGCATATATAAGAGGATGAGAAAGAA  897
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTCTAAAAGTTTAACTTTGCATATATAAGAGGATGAGAAAGAA  899

seq1  AAATGCCCCCCAAAAAAACTTATCATTCAAATGAGCATATTGCCCCAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCCCCAAAAAAACTTATCATTCAAATGAGCATATTGCCCCAAAG  949

seq1  ATGGACTTTCCTAGGTAGCTGGGAATAAAAACAACTAGAAATAAAATTTA  997
      |||||||||||||||||||||||| ||||||| ||||||||||||  || 
seq2  ATGGACTTTCCTAGGTAGCTGGGATTAAAAAC-ACTAGAAATAAA--TTT  996

seq1  AAATAATAATAAATACTGACAGGGATGCTAAAGAAAGGGCATTCAATATT  1047
      ||||||| ||||||||||||||||||||| |||||| |||||   ||| |
seq2  AAATAAT-ATAAATACTGACAGGGATGCT-AAGAAA-GGCAT--CATA-T  1040

seq1  TCAGGATAGGGGCGACCTCTTCCTGCA-TTCTCACGGCTCTTTCTGTTTG  1096
      |||||||  ||||||   ||| ||||| ||||| | ||||||||||||  
seq2  TCAGGAT--GGGCGA---CTTTCTGCATTTCTC-CCGCTCTTTCTGTTGT  1084

seq1  TGAGACCTGTGGCTTGACCCTGC  1119
       ||||  || |||||||||||||
seq2  GGAGA--TGGGGCTTGACCCTGC  1105