BAC Information

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BAC

Clone NameB6Ng01-147C14
Chromosome16 (Build37)3 (Build37)
Map Location 89,839,766 - 89,840,8097,049,880 - 7,050,581
singlet/doubletsingletsinglet
Overlap geneTiam1
Upstream geneKrtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147C14.bB6Ng01-147C14.g
ACCDH944117DH944118
length1,039980
definitionDH944117|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C14, 5' end.DH944118|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,839,766 - 89,840,809)(7,049,880 - 7,050,581)
sequence
gaattcaaaactaggcccgggataaaatagctgcgtaagtacagactcca
caccatgaggatgacatcacagctaaaatactaagtattttagtaaatag
tgtatttactaaatgtatattctatattttacatataccatatggtgcat
gtgtatatactacgactacaactactactaaaatactaagtgctaaaata
tcatcagaagtaccctgggacaagggaaagctagagttgacctgtgcaca
cttccctcagagacagcataggaatggttagtctaaatattgtgtaacct
gagctaactctacaataagccctgagtgccacctaaggggtgggctggag
agagaaactcccaagggtttgctctttctgttttattttgttctttctct
gtgtagtcctggctgtccttgaactcggagatccgcctacctctgcctct
tgtgttctgggattaagagcatgggcttaccaccgcccggcccatctgtt
actgtttgaaaatttattcagccagttgagctattagatcatcttttgca
ccctaaaatagaaagcagcacttgatactgttgagatgtcctgtgtcagt
gtgtactaagagcctgcatatatgtgggctcatataaaggaaagctacct
caggctggtttggactggctgggtctgcacgagatgccaagggagtttct
aaggtcagaggctatcgaaccatccaggattttttgcaagagctaaaatc
acctcagagacaagcctatgactgagttcatcaaagttggcagacccaaa
ctaaagggggtggggaggtggcagcgtcctctgggcttagcttacgaatg
gcatgaggaggaggctgaatgtgatcatctctgcttcctaacttggaata
aactgcaccagcttcctcagacccctgcagccaggactcccctccccacc
ctaccccctctcccatgatggaccacaccctcagcgtgagctgaaatcct
cttccctttgggtggcttttgcctaagtaattcctaaca
gaattcacgcagttgaatccttctcaacagtctgtgttgcgggaacactt
cattaccaccgttccccagctgaagagttctgaattcatgcagttgaatc
cttctcaacagtctgttttacgggaacctttatgaccgtgacccgcagtt
ctggttccggaatgagggatcttccttgcgccggtgatggtaaccgtccc
aggtcttctcgtcccgggatttctcgtcccaggtcttctcgtcccgggtc
tcagcaccaactcttacacgcgttctcgcgaccggccaggaagaacgcaa
caaaccggaatcttctgcggcaaaagctttattgcttacatcttcaggag
caagagagcaagagcgcaagagagcaagagagcaagaaaaagaacaagaa
caagaaagcaagagaaagaacaagaacaagaaagcaagagagagaaaaag
aatggcaaaaccccgtcccttttaaggagaattatcctccgcctaggacg
tattactccctgattggctgcagcccatcggctcagttgtcatcacaaga
aaggcagaacacatggcgggaaaactgcccctgcacgtgtgcagattatg
tttaccacttagaacacagctgtcagcgccatcttataatggcaaatgtg
agggcggctcccaacatcctgcaacacggctagcattttaaggagactct
gagaaagtggaaagtatccaagatggtgggaggaagcccttccaagctat
ggtggctgaggaaagagtacagggaaggtatggctgccttctttgtgatg
tgtgaaaggttcctacggtatggttgagagctggcctcaatcacaggagt
ttgagcagcgtctgtaaactcacctacatttttgtctttcttgtggttgt
cagtctctgttgctgacagccgtggttacagactaagtttcaggagaaga
gattctggaggcagcacaaggagctgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89839766_89840809
seq2: B6Ng01-147C14.b_44_1082

seq1  GAATTCAAAACTAGGCCCGGGATAAAATAGCTGCGTAAGTACAGACTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTAGGCCCGGGATAAAATAGCTGCGTAAGTACAGACTCCA  50

seq1  CACCATGAGGATGACATCACAGCTAAAATACTAAGTATTTTAGTAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAGGATGACATCACAGCTAAAATACTAAGTATTTTAGTAAATAG  100

seq1  TGTATTTACTAAATGTATATTCTATATTTTACATATACCATATGGTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTACTAAATGTATATTCTATATTTTACATATACCATATGGTGCAT  150

seq1  GTGTATATACTACGACTACAACTACTACTAAAATACTAAGTGCTAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATACTACGACTACAACTACTACTAAAATACTAAGTGCTAAAATA  200

seq1  TCATCAGAAGTACCCTGGGACAAGGGAAAGCTAGAGTTGACCTGTGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAAGTACCCTGGGACAAGGGAAAGCTAGAGTTGACCTGTGCACA  250

seq1  CTTCCCTCAGAGACAGCATAGGAATGGTTAGTCTAAATATTGTGTAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCAGAGACAGCATAGGAATGGTTAGTCTAAATATTGTGTAACCT  300

seq1  GAGCTAACTCTACAATAAGCCCTGAGTGCCACCTAAGGGGTGGGCTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAACTCTACAATAAGCCCTGAGTGCCACCTAAGGGGTGGGCTGGAG  350

seq1  AGAGAAACTCCCAAGGGTTTGCTCTTTCTGTTTTATTTTGTTCTTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTCCCAAGGGTTTGCTCTTTCTGTTTTATTTTGTTCTTTCTCT  400

seq1  GTGTAGTCCTGGCTGTCCTTGAACTCGGAGATCCGCCTACCTCTGCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTCCTGGCTGTCCTTGAACTCGGAGATCCGCCTACCTCTGCCTCT  450

seq1  TGTGTTCTGGGATTAAGAGCATGGGCTTACCACCGCCCGGCCCATCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGGGATTAAGAGCATGGGCTTACCACCGCCCGGCCCATCTGTT  500

seq1  ACTGTTTGAAAATTTATTCAGCCAGTTGAGCTATTAGATCATCTTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGAAAATTTATTCAGCCAGTTGAGCTATTAGATCATCTTTTGCA  550

seq1  CCCTAAAATAGAAAGCAGCACTTGATACTGTTGAGATGTCCTGTGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAATAGAAAGCAGCACTTGATACTGTTGAGATGTCCTGTGTCAGT  600

seq1  GTGTACTAAGAGCCTGCATATATGTGGGCTCATATAAAGGAAAGCTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTAAGAGCCTGCATATATGTGGGCTCATATAAAGGAAAGCTACCT  650

seq1  CAGGCTGGTTTGGACTGGCTGGGTCTGCACGAGATGCCAAGGGAGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTTTGGACTGGCTGGGTCTGCACGAGATGCCAAGGGAGTTTCT  700

seq1  AAGGTCAGAGGCTATCGAACCATCCAGGATTTTTAGCAAGAGCTAAAATC  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGGTCAGAGGCTATCGAACCATCCAGGATTTTTTGCAAGAGCTAAAATC  750

seq1  ACCTCAGAGACAAGCCTATGACTGAGTTCATCAAAGTTGGCAGACCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAGACAAGCCTATGACTGAGTTCATCAAAGTTGGCAGACCCAAA  800

seq1  CTAAAGGGGGTGGGGAGGTGGCAGCGTCCTCTGGGCTTAGCTTACGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGGGTGGGGAGGTGGCAGCGTCCTCTGGGCTTAGCTTACGAATG  850

seq1  GCATGAGGAGGAGGCTGAATGTGATCATCTCTGCTTCCTAACTTGGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGGAGGAGGCTGAATGTGATCATCTCTGCTTCCTAACTTGGAATA  900

seq1  AACTGCACCAGCTTCCTCAGACCCCTGCAGCCAGGACTCCCCTCCCCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTGCACCAGCTTCCTCAGACCCCTGCAGCCAGGACTCCCCT-CCCCAC  949

seq1  CCTACCCCCTCTCCCATGATGGACCACACCCTCAAGCTGTGAGCTGAAAT  1000
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  CCTACCCCCTCTCCCATGATGGACCACACCCTC-AGC-GTGAGCTGAAAT  997

seq1  CCCTCTTCCCTTTGGGTTGCTTTTGCCAGAGTTATTTCCTAACA  1044
       |||||||||||||||| |||||||||  || || |||||||||
seq2  -CCTCTTCCCTTTGGGTGGCTTTTGCCTAAG-TAATTCCTAACA  1039

seq1: chr3_7049880_7050581
seq2: B6Ng01-147C14.g_73_735 (reverse)

seq1  TGTTGGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTG  50

seq1  TGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100

seq1  CCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCAGC  150
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  CCATGTGTTCTGCCTTTCTTGTGATGACAACTGAGCCGATGGGCTGCAGC  150

seq1  CAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGG  200

seq1  ACGGGGTTTTGCCATTCTTTCTCTTGTTTTCTCACTCCTGCTCTCTTGCT  250
      |||||||||||||||||||| |||                ||||||||||
seq2  ACGGGGTTTTGCCATTCTTTTTCT----------------CTCTCTTGCT  234

seq1  TTCTTGTTCTTGTTCTTTTTCTTGCTTTCTTG--------CTCTCTCTTG  292
      |||||||||||||||||| |||||||||||||        || | |||||
seq2  TTCTTGTTCTTGTTCTTTCTCTTGCTTTCTTGTTCTTGTTCTTTTTCTTG  284

seq1  CTCTCTTGCTCTCTTGCTGTCTTGCTTTCTTGCTCCTGAAGATGTAAGCA  342
      |||||||||||||||||  ||||||| |||||||||||||||||||||||
seq2  CTCTCTTGCTCTCTTGCGCTCTTGCTCTCTTGCTCCTGAAGATGTAAGCA  334

seq1  ATAAAGCTTTTGCCGCAGAAGATTCCGGTTTGTTGTGTTCTTCCTGGCCG  392
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAAAGCTTTTGCCGCAGAAGATTCCGGTTTGTTGCGTTCTTCCTGGCCG  384

seq1  GTCGCGAGAATGCGTGTAAGAGTTGGTGCTGAGACCCGGGACGAGAAGAC  442
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCGCGAGAACGCGTGTAAGAGTTGGTGCTGAGACCCGGGACGAGAAGAC  434

seq1  CTGGGACGAGAAAACCCGGGACGAGAAGACCTGGGACGAGAAAACCCGGG  492
      ||||||||||||| ||||||||||||||                      
seq2  CTGGGACGAGAAATCCCGGGACGAGAAG----------------------  462

seq1  ACAAGAAAAACCTGGGACGGTTACCATCACCGGCGCAAGGAAGATTCCTC  542
               |||||||||||||||||||||||||||||||||||| ||||
seq2  ---------ACCTGGGACGGTTACCATCACCGGCGCAAGGAAGATCCCTC  503

seq1  ATTCCGGAACCAGAACTGCGGGTCATGGTCATAAAGGTTCCCGTAAAACA  592
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTCCGGAACCAGAACTGCGGGTCACGGTCATAAAGGTTCCCGTAAAACA  553

seq1  GACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGG  642
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GACTGTTGAGAAGGATTCAACTGCATGAATTCAGAACTCTTCAGCTGGGG  603

seq1  AATGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCA  692
      || ||||||||||||||||||||| || ||||||||||||||||||||||
seq2  AACGGTGGTAATGAAGTGTTCCCGCAACACAGACTGTTGAGAAGGATTCA  653

seq1  ACTGCGTGAA  702
      ||||||||||
seq2  ACTGCGTGAA  663