BAC Information

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BAC

Clone NameB6Ng01-149A11
Chromosome16 (Build37)
Map Location 29,954,503 - 30,163,772
singlet/doubletdoublet
Overlap geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1
Downstream gene1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149A11.bB6Ng01-149A11.g
ACCDH945477DH945478
length959962
definitionDH945477|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A11, 5' end.DH945478|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,954,503 - 29,955,467)(30,162,814 - 30,163,772)
sequence
gaattcttgcctctgcacaactcccttgaccaggagtcctgtgccttccc
acactttcctttctctgtttgtcaggcgcagagccagctgcgaatgaggc
tttgcaagggaggaaagataaagtagatatcactccagacccctggggga
cttgggattcaccctcccaggaaatgacttgcctgtgttttgctctacac
attccaggcaattcagcagaaagtattccagccattcactgccccagaca
ccaggacatgaaggagccactggatgaagaacatgctcactggatggaaa
taaactcaggccaccaacaggataagtacatcgatggtccaaacctcctc
aacggaccaagccaccgtgaaacatcggtgcatgcaacgattctagacgt
ttctaggaatgagagttaggtatgttataatttccgcttccctcagagtg
aatttcacaacagccgctccagatggttgcaggcagtaattacctctatt
ttaagcctgcagcagaaggaccactccctcaaggagatacaactaggaat
gaaggaagccaaggagctggtagcgtaggtcctcagactctgtgaagaat
ctactcaacccaggagagtgtcaccctaaagactcgaagcttttaaaaag
tggtacagaatcaccccccccccaaaaaaaaaagtagctcagaaaggtac
ccaccaatcaaatcatagacaatctattcaaataaacaaggacattagtg
ggttgtgataacagtggattataactatgataataatacattgtagtcat
tgagtaaaataggcatgcaggcccatgctagtgtgcatgaggacagaaaa
caagaaaagagaaagaaagagaagagaaggaaagagaggaaagaaaagag
agagaagagagagagagaaggaagaaagggaagggaagggaagggaaggg
aagggaagg
gaattccatatatacatgtgaaattcaggggctagatctgtggagtctcc
tctttctttccgtatttgcgtggattttgggatcaaactcaggtcaccag
gtttgtgtaggcagcacaaggacctttgcccactaagccacctcactggg
tcttttctttcctaactgttcagggcttgtgccctttgtacgtttactca
tccacatcacccaggattgagcgctatgcactaggactcctccactgtca
cctgttaggggacttccctgctttccaggtcctgtagggacctaaaataa
tccagcaagtaactccctgagccagtgttgtccttcattacctcagttaa
gtacaggaaaaatcagtctttatttttatcaacacttagtccttctctag
tatttttacttttgtggatgtaagtttatgatctacatcacttccttctc
tgtgaagaatttttttttctttttgagataaggtctcaatctatagctct
ggctggtctagaactcataccccagcctggcctcaaagtcaccaggcttt
gcccatctctgcctcccaaacaggggttaaaaatggagccaccagccaag
cagtggtggcccatgactttaatctcagcactcaggaagcagaggcaagt
ggatctccatgagtctgaagccaacctggtctacagagaaagtcccacca
gggctgcacagagagaacctgtcttgaaaaaccaaaccaaaccaaaacaa
aaaaagagttgccacactacccttttatgaagttttcactttattcccac
atgccttgtgacttctggggagttagagaagttgcaggagagccttttct
tttcctttaaggaacagaacaaagtgtaaggggtggaaacactacccgaa
aagaatgatgcaataaacttttttaggagatcagacacaccaagaaaaaa
aaatctctgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29954503_29955467
seq2: B6Ng01-149A11.b_46_1004

seq1  GAATTCTTGCCTCTGCACAACTCCCTTGACCAGGAGTCCTGTGCCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTCTGCACAACTCCCTTGACCAGGAGTCCTGTGCCTTCCC  50

seq1  ACACTTTCCTTTCTCTGTTTGTCAGGCGCAGAGCCAGCTGCGAATGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCCTTTCTCTGTTTGTCAGGCGCAGAGCCAGCTGCGAATGAGGC  100

seq1  TTTGCAAGGGAGGAAAGATAAAGTAGATATCACTCCAGACCCCTGGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGGGAGGAAAGATAAAGTAGATATCACTCCAGACCCCTGGGGGA  150

seq1  CTTGGGATTCACCCTCCCAGGAAATGACTTGCCTGTGTTTTGCTCTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATTCACCCTCCCAGGAAATGACTTGCCTGTGTTTTGCTCTACAC  200

seq1  ATTCCAGGCAATTCAGCAGAAAGTATTCCAGCCATTCACTGCCCCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGCAATTCAGCAGAAAGTATTCCAGCCATTCACTGCCCCAGACA  250

seq1  CCAGGACATGAAGGAGCCACTGGATGAAGAACATGCTCACTGGATGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACATGAAGGAGCCACTGGATGAAGAACATGCTCACTGGATGGAAA  300

seq1  TAAACTCAGGCCACCAACAGGATAAGTACATCGATGGTCCAAACCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCAGGCCACCAACAGGATAAGTACATCGATGGTCCAAACCTCCTC  350

seq1  AACGGACCAAGCCACCGTGAAACATCGGTGCATGCAACGATTCTAGACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACCAAGCCACCGTGAAACATCGGTGCATGCAACGATTCTAGACGT  400

seq1  TTCTAGGAATGAGAGTTAGGTATGTTATAATTTCCGCTTCCCTCAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAATGAGAGTTAGGTATGTTATAATTTCCGCTTCCCTCAGAGTG  450

seq1  AATTTCACAACAGCCGCTCCAGATGGTTGCAGGCAGTAATTACCTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACAACAGCCGCTCCAGATGGTTGCAGGCAGTAATTACCTCTATT  500

seq1  TTAAGCCTGCAGCAGAAGGACCACTCCCTCAAGGAGATACAACTAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTGCAGCAGAAGGACCACTCCCTCAAGGAGATACAACTAGGAAT  550

seq1  GAAGGAAGCCAAGGAGCTGGTAGCGTAGGTCCTCAGACTCTGTGAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCCAAGGAGCTGGTAGCGTAGGTCCTCAGACTCTGTGAAGAAT  600

seq1  CTACTCAACCCAGGAGAGTGTCACCCTAAAGACTCGAAGCTTTTAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAACCCAGGAGAGTGTCACCCTAAAGACTCGAAGCTTTTAAAAAG  650

seq1  TGGTACAGAATCACCCCCCCCCCAAAAAAAAAAGTAGCTCAGAAAGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGAATCACCCCCCCCCCAAAAAAAAAAGTAGCTCAGAAAGGTAC  700

seq1  CCACCAATCAAATCATAGACAATCTATTCAAATAAACAAGGACATTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAATCAAATCATAGACAATCTATTCAAATAAACAAGGACATTAGTG  750

seq1  GGTTGTGATAACAGTGGATTATAACTATGATAATAATACATTGTAGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGATAACAGTGGATTATAACTATGATAATAATACATTGTAGTCAT  800

seq1  TGAGTAAAATAGGCATGCAGGCCCATGCTAGTGTGCATGAGGACAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAATAGGCATGCAGGCCCATGCTAGTGTGCATGAGGACAGAAAA  850

seq1  CAAGAAAAGAGAAAGAAAGAGAAGAGAAGGAAAGAGAAGGAAAGAAAAGA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAGAAAAGAGAAAGAAAGAGAAGAGAAGGAAAGAG-AGGAAAGAAAAGA  899

seq1  GAAGAGAAGAGAAGAGAAGAGAAGGAAAGAAAAGGGAAGGGAAGGGAAGG  950
      | ||||||||| |||| ||||||||||   ||||||||||||||||||||
seq2  G-AGAGAAGAG-AGAG-AGAGAAGGAA--GAAAGGGAAGGGAAGGGAAGG  944

seq1  GAAGGGAAGGGAAGG  965
      |||||||||||||||
seq2  GAAGGGAAGGGAAGG  959

seq1: chr16_30162814_30163772
seq2: B6Ng01-149A11.g_68_1029 (reverse)

seq1  ATTCAGAGATTTTTTTTTCTTGGTGTGTCTGATCTCCTAAAAAAGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGATTTTTTTTTCTTGGTGTGTCTGATCTCCTAAAAAAGTTTAT  50

seq1  TGCATCATTCTTTTCGGTTAGTGTTTCCACCCC-TACACTTTTGTTCTGT  99
      ||||||||||||||||| ||||||||||||||| ||||| ||||||||||
seq2  TGCATCATTCTTTTCGGGTAGTGTTTCCACCCCTTACAC-TTTGTTCTGT  99

seq1  TCCTTAAAGGAGAAG-AAAGGCTCTCCTGCAACTTCTCTAACTCCCCAGA  148
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAGGAAAAGAAAAGGCTCTCCTGCAACTTCTCTAACTCCCCAGA  149

seq1  AGTCACAAGGCATGTGGGAAT-AAGTGAAAACTTCAT-AAAGGGTAGTGT  196
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  AGTCACAAGGCATGTGGGAATAAAGTGAAAACTTCATAAAAGGGTAGTGT  199

seq1  GGCAACTCTTTTTTTGTTTTGGTTTGGTTTGGTTTTTCAAGACAGGTTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTCTTTTTTTGTTTTGGTTTGGTTTGGTTTTTCAAGACAGGTTCT  249

seq1  CTCTGTGCAGCCCTGGTGGGACTTTCTCTGTAGACCAGGTTGGCTTCAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCAGCCCTGGTGGGACTTTCTCTGTAGACCAGGTTGGCTTCAGA  299

seq1  CTCATGGAGATCCACTTGCCTCTGCTTCCTGAGTGCTGAGATTAAAGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAGATCCACTTGCCTCTGCTTCCTGAGTGCTGAGATTAAAGTCA  349

seq1  TGGGCCACCACTGCTTGGCTGGTGGCTCCATTTTTAACCCCTGTTTGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACCACTGCTTGGCTGGTGGCTCCATTTTTAACCCCTGTTTGGGA  399

seq1  GGCAGAGATGGGCAAAGCCTGGTGACTTTGAGGCCAGGCTGGGGTATGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGATGGGCAAAGCCTGGTGACTTTGAGGCCAGGCTGGGGTATGAG  449

seq1  TTCTAGACCAGCCAGAGCTATAGATTGAGACCTTATCTCAAAAAGAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACCAGCCAGAGCTATAGATTGAGACCTTATCTCAAAAAGAAAAA  499

seq1  AAAATTCTTCACAGAGAAGGAAGTGATGTAGATCATAAACTTACATCCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTCACAGAGAAGGAAGTGATGTAGATCATAAACTTACATCCAC  549

seq1  AAAAGTAAAAATACTAGAGAAGGACTAAGTGTTGATAAAAATAAAGACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAAATACTAGAGAAGGACTAAGTGTTGATAAAAATAAAGACTG  599

seq1  ATTTTTCCTGTACTTAACTGAGGTAATGAAGGACAACACTGGCTCAGGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTGTACTTAACTGAGGTAATGAAGGACAACACTGGCTCAGGGA  649

seq1  GTTACTTGCTGGATTATTTTAGGTCCCTACAGGACCTGGAAAGCAGGGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTGCTGGATTATTTTAGGTCCCTACAGGACCTGGAAAGCAGGGAA  699

seq1  GTCCCCTAACAGGTGACAGTGGAGGAGTCCTAGTGCATAGCGCTCAATCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTAACAGGTGACAGTGGAGGAGTCCTAGTGCATAGCGCTCAATCC  749

seq1  TGGGTGATGTGGATGAGTAAACGTACAAAGGGCACAAGCCCTGAACAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGATGTGGATGAGTAAACGTACAAAGGGCACAAGCCCTGAACAGTT  799

seq1  AGGAAAGAAAAGACCCAGTGAGGTGGCTTAGTGGGCAAAGGTCCTTGTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAAAAGACCCAGTGAGGTGGCTTAGTGGGCAAAGGTCCTTGTGC  849

seq1  TGCCTACACAAACCTGGTGACCTGAGTTTGATCCCAAAATCCACGCAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACACAAACCTGGTGACCTGAGTTTGATCCCAAAATCCACGCAAAT  899

seq1  ACGGAAAGAAAGAGGAGACTCCACAGATCTAGCCCCTGAATTTCACATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAAGAAAGAGGAGACTCCACAGATCTAGCCCCTGAATTTCACATGT  949

seq1  ATATATGGAATTC  959
      |||||||||||||
seq2  ATATATGGAATTC  962