BAC Information

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BAC

Clone NameB6Ng01-149A19
Chromosome16 (Build37)
Map Location 85,710,031 - 85,878,136
singlet/doubletdoublet
Overlap geneAdamts1, Adamts5
Upstream geneMrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
Downstream geneLOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149A19.bB6Ng01-149A19.g
ACCDH945493DH945494
length1,1891,104
definitionDH945493|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A19, 5' end.DH945494|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,876,941 - 85,878,136)(85,710,031 - 85,710,815)
sequence
gaattcctggatgatggtcatggtatgtaggtttctggacattgtagtct
caggaaaacaggttcagattattaggagcttcccaacatgatgacctcat
gatgctcaactcaccctgtgagacaatggttattggaagagtctccaaaa
agaagcaagcaaattgattccctcttggcatgcaatgccagcattcttgg
tggcattacagctatggtatttttgctgttgacttaagaagttcaaaagg
gaaagagtgtgggagaccacacagaatgtctagcagtgggagccctgaga
gtctggcttttatttcctcttataccgctaagttcctgtgagaacattgg
cagacattttggtttgcctgatactaatatgactttcagaattatttgtt
gtatatccattaaagggctttggttaaggtgtaggacgtgatgaatacct
ttgacagcaatataaaactagaaaaggaagctctttagttattcattgag
tagaaatttttgatttttatcctgacagcaggttctcctggaagtggagt
aaaaactacagaaccaaaatagcccaacccatggtggcaaaagacttaaa
gaacttcaaaggaaaattgctggctttatccttgtgaggcagttcaagag
catagcatactttattaaactccataagaggaggattagtgctgtaattc
acaacaaaaaaaagtacagaggaagtcacaatttctagaaataataaatc
ctattccctaagtagtcttcgaaacaagctgttgcaaatttcctctagtc
ctttacagttgtaacatcatagaaatatggcaagcaggacaatcacaggt
ggaaagcagccttgaaatcatgtacttccacttcctcatctttcagaaaa
gcagccattctgcctctttctgctctcttcaaatggggctctttctgaaa
cagtggctaagtttggattttggagattataatctcataaaaatgatcta
atgagagtcattgctcaaagtagcatcaagcaatcagcgataaccattct
ttatccagttcacaaatttttgtctaataaaccctttttcttaatggtgt
taggcattttggacttcaactaaacagtgccaaacacccaacatatttat
ttaattcaaacaggtggggtttgccaccagaagtgtttt
gaattcaatgaaaatgaaggcactatatacccaaatgtatgggatacaat
gaaagcagcgctaagaagaaactttacagcattaagtgccttcttaaaga
aactggaaagttttcacaccagcactttaaaagcacatacccaagagaaa
ataatcaaaatcagttctgaaatcaataaattagaaacaagagagcaatt
aaaaaaattaaaaaaaaaacaagaactggttctgtgagaaaatcaagaag
atacacaaattttggggcaaattaaagatagagagagaatattcaaatta
acaaaatgataaatgaaactgggacttaacaacagaaactgaggatataa
acagaaactttaggtcttacttcaaaacctgtactctacaaaattggaaa
actaaattaaatggataatttttttacttacttcccaaagttaaatcaag
accaggttaacaatataaatagacctataacacccaaagatatagaagca
gttattaaaagtctcccaaccaaaaaaagcccaaggccagaatgttgaag
catttctgcatccctggaatgaagcctacttgatcatgtttttgatgtgt
tcttagatttggtttgtgagcattttattgaatattttttcatcaatgtt
cataagggaaattggtctgagattttctttccttgttgagtctttatgtg
gttaggtatcagagtgactatgacctaataaaatgatttgggcagtgatt
tttctgtttttattttgtgaaataatttgcggagtattgtattagctttt
ccttgaaagtcttgtagatttctacactgtttaaaatatcaaaagataaa
tagaggtaataaaaatattgatgaagtacctaccacaggttgtgtgaagc
taatagatattcagtttgataaacaagatattagatatgttcagataaga
tagaagtttccttaaaaatgccttatgataagcttttccctgtcttctca
cctcacttggttctcaccttcctgtgtcctcagtttccaccttctgtgtc
atatattacaccatatatatattatatattcatatatatccacgtataag
atat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85876941_85878136
seq2: B6Ng01-149A19.b_46_1234 (reverse)

seq1  AAAACACTTC--GTAGCAAACACCCACCTGTTTGAAATTAAATTAATATG  48
      ||||||||||  || |||||| |||||||||||| |||||||| ||||||
seq2  AAAACACTTCTGGTGGCAAAC-CCCACCTGTTTG-AATTAAATAAATATG  48

seq1  TTGGTTGTTTTGGCACTGTTTAGTTGAAGTTCAAAATGCCTAACA-CATT  97
      |||| || |||||||||||||||||||||| |||||||||||||| ||||
seq2  TTGGGTG-TTTGGCACTGTTTAGTTGAAGTCCAAAATGCCTAACACCATT  97

seq1  AAGAAATAGGTGTTTA-TAGACAAAAATTTTGTGAAACTTGGGATAAAG-  145
      |||||| ||| ||||| |||||||||| |||||| ||||  |||||||| 
seq2  AAGAAAAAGG-GTTTATTAGACAAAAA-TTTGTG-AACT--GGATAAAGA  142

seq1  ATGGTTATCGCTGATTGCCTTGATGCTACTTTGAGCAATGACTCTCATTA  195
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGGTTATCGCTGATTG-CTTGATGCTACTTTGAGCAATGACTCTCATTA  191

seq1  GATCATTTTATGGAGATTATAATCTCCAAAATCCAAAACTTAGCCACCTG  245
      |||||||||   |||||||||||||||||||||| ||||||||||| |||
seq2  GATCATTTTTATGAGATTATAATCTCCAAAATCC-AAACTTAGCCA-CTG  239

seq1  TTTCAGAAAGAGCCCCATTTGAAGAGAGCAGAAAGAAGGCAGAATGGCTG  295
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTCAGAAAGAGCCCCATTTGAAGAGAGCAGAAAG-AGGCAGAATGGCTG  288

seq1  CTTTTCTGAAAGATGAGGAAGTGGAAGTACATGATTTCAAGGCTGCTTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGAAAGATGAGGAAGTGGAAGTACATGATTTCAAGGCTGCTTTC  338

seq1  CACCTGTGATTGTCCTGCTTGCCATATTTCTATGATGTTACAACTGTAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGATTGTCCTGCTTGCCATATTTCTATGATGTTACAACTGTAAA  388

seq1  GGACTAGAGGAAATTTGCAACAGCTTGTTTCGAAGACTACTTAGGGAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAGGAAATTTGCAACAGCTTGTTTCGAAGACTACTTAGGGAATA  438

seq1  GGATTTATTATTTCTAGAAATTGTGACTTCCTCTGTACTTTTTTTTGTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATTATTTCTAGAAATTGTGACTTCCTCTGTACTTTTTTTTGTTG  488

seq1  TGAATTACAGCACTAATCCTCCTCTTATGGAGTTTAATAAAGTATGCTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACAGCACTAATCCTCCTCTTATGGAGTTTAATAAAGTATGCTAT  538

seq1  GCTCTTGAACTGCCTCACAAGGATAAAGCCAGCAATTTTCCTTTGAAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAACTGCCTCACAAGGATAAAGCCAGCAATTTTCCTTTGAAGTT  588

seq1  CTTTAAGTCTTTTGCCACCATGGGTTGGGCTATTTTGGTTCTGTAGTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTCTTTTGCCACCATGGGTTGGGCTATTTTGGTTCTGTAGTTTT  638

seq1  TACTCCACTTCCAGGAGAACCTGCTGTCAGGATAAAAATCAAAAATTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCACTTCCAGGAGAACCTGCTGTCAGGATAAAAATCAAAAATTTCT  688

seq1  ACTCAATGAATAACTAAAGAGCTTCCTTTTCTAGTTTTATATTGCTGTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGAATAACTAAAGAGCTTCCTTTTCTAGTTTTATATTGCTGTCA  738

seq1  AAGGTATTCATCACGTCCTACACCTTAACCAAAGCCCTTTAATGGATATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTCATCACGTCCTACACCTTAACCAAAGCCCTTTAATGGATATA  788

seq1  CAACAAATAATTCTGAAAGTCATATTAGTATCAGGCAAACCAAAATGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATAATTCTGAAAGTCATATTAGTATCAGGCAAACCAAAATGTCT  838

seq1  GCCAATGTTCTCACAGGAACTTAGCGGTATAAGAGGAAATAAAAGCCAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGTTCTCACAGGAACTTAGCGGTATAAGAGGAAATAAAAGCCAGA  888

seq1  CTCTCAGGGCTCCCACTGCTAGACATTCTGTGTGGTCTCCCACACTCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGGCTCCCACTGCTAGACATTCTGTGTGGTCTCCCACACTCTTT  938

seq1  CCCTTTTGAACTTCTTAAGTCAACAGCAAAAATACCATAGCTGTAATGCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGAACTTCTTAAGTCAACAGCAAAAATACCATAGCTGTAATGCC  988

seq1  ACCAAGAATGCTGGCATTGCATGCCAAGAGGGAATCAATTTGCTTGCTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAATGCTGGCATTGCATGCCAAGAGGGAATCAATTTGCTTGCTTC  1038

seq1  TTTTTGGAGACTCTTCCAATAACCATTGTCTCACAGGGTGAGTTGAGCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGACTCTTCCAATAACCATTGTCTCACAGGGTGAGTTGAGCAT  1088

seq1  CATGAGGTCATCATGTTGGGAAGCTCCTAATAATCTGAACCTGTTTTCCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTCATCATGTTGGGAAGCTCCTAATAATCTGAACCTGTTTTCCT  1138

seq1  GAGACTACAATGTCCAGAAACCTACATACCATGACCATCATCCAGGAATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTACAATGTCCAGAAACCTACATACCATGACCATCATCCAGGAATT  1188

seq1  C  1196
      |
seq2  C  1189

seq1: chr16_85710031_85710815
seq2: B6Ng01-149A19.g_404_1170

seq1  ACTGAGGATATAAACAGAAACTTTAGGTCTTACTTCAAAACCTGTACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATATAAACAGAAACTTTAGGTCTTACTTCAAAACCTGTACTCT  50

seq1  ACAAAATTGGAAAACTAAATTAAATGGATAATTTTTTTACTTACTTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTGGAAAACTAAATTAAATGGATAATTTTTTTACTTACTTCCCA  100

seq1  AAGTTAAATCAAGACCAGGTTAACAATATAAATAGACCTATAACACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATCAAGACCAGGTTAACAATATAAATAGACCTATAACACCCAA  150

seq1  AGATATAGAAGCAGTTATTAAAAGTCTCCCAACCAAAAAAAGCCCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGAAGCAGTTATTAAAAGTCTCCCAACCAAAAAAAGCCCAAGGC  200

seq1  CAGAATGTTGAAGCATTTCTGCATCCCTGGAATGAAGCCTACTTGATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTTGAAGCATTTCTGCATCCCTGGAATGAAGCCTACTTGATCAT  250

seq1  GTTTTTGATGTGTTCTTAGATTTGGTTTGTGAGCATTTTATTGAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGATGTGTTCTTAGATTTGGTTTGTGAGCATTTTATTGAATATTT  300

seq1  TTTCATCAATGTTCATAAGGGAAATTGGTCTGAGATTTTCTTTCCTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAATGTTCATAAGGGAAATTGGTCTGAGATTTTCTTTCCTTGTT  350

seq1  GAGTCTTTATGTGGTTAGGTATCAGAGTGACTATGACCTAATAAAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTATGTGGTTAGGTATCAGAGTGACTATGACCTAATAAAATGAT  400

seq1  TTGGGCAGTGATTTTTCTGTTTTTATTTTGTGAAATAATTTGCGGAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGTGATTTTTCTGTTTTTATTTTGTGAAATAATTTGCGGAGTAT  450

seq1  TGTATTAGCTTTTCCTTGAAAGTCTTGTAGATTTCTACACTGTTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTATTAGCTTTTCCTTGAAAGTCTTGTAGATTTCTACACTGTTT-AAAA  499

seq1  TATCAAAAGATAAATAGAGGTAATAAAAATAATGATGAAGTACCTACCAC  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATCAAAAGATAAATAGAGGTAATAAAAATATTGATGAAGTACCTACCAC  549

seq1  AGGTTGTGTGAAGCTAATAGATATTCAGTTTTGATAAACAAGATATTAGA  600
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGTTGTGTGAAGCTAATAGATATTCAG-TTTGATAAACAAGATATTAGA  598

seq1  TTATGTTCAGGATAAAGATAGAAGTTTCCTTAAAAATGCCTTATGATAAG  650
       |||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  -TATGTTCA-GAT-AAGATAGAAGTTTCCTTAAAAATGCCTTATGATAAG  645

seq1  CTTTTCCCTGTCTTTCTCA-CTCACTTGGTTTCTCACCTTTCCTGTGTTC  699
      |||||||||||| |||||| ||||||||| |||||||| ||||||||| |
seq2  CTTTTCCCTGTC-TTCTCACCTCACTTGG-TTCTCACC-TTCCTGTGTCC  692

seq1  TCAGTTTTCCACCTTTCCTGTGTTCATATATATACACCATATAATATATA  749
      |||| ||||||||||  ||||| |||||||| ||||||||   |||||||
seq2  TCAG-TTTCCACCTT--CTGTG-TCATATAT-TACACCAT---ATATATA  734

seq1  TTATATATATCACATATATATCACCATATAAGATAT  785
      ||||||||    ||||||||||  | ||||||||||
seq2  TTATATAT---TCATATATATCCACGTATAAGATAT  767