BAC Information

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BAC

Clone NameB6Ng01-149B24
Chromosome17 (Build37)16 (Build37)
Map Location 42,054,007 - 42,054,54162,441,141 - 62,442,025
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149B24.bB6Ng01-149B24.g
ACCDH945548DH945549
length1,018886
definitionDH945548|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B24, 5' end.DH945549|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,054,007 - 42,054,541)(62,441,141 - 62,442,025)
sequence
gaattcctgatctttccaacacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcatgatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaataatcgcttcataaaatgagttg
ggtagagtcccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagattttctttgaaggtctgatagaactctgcactaaacctgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaagtaatatgggactgtttagatggttaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatgagatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgatttttttcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttgggttgatttcacccgagtttgattat
ttcctgctgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttttcaagctgctagtatgtgctctctcccgtttcttc
ctagaggcactcgagctatgagtttccctcttaagaaatgctttcattgt
gtccatagggttgggtac
gaattcttctctcctttctttgacattgtaaattctgtggattatactaa
tgttgtcaggcttagggtcaagcactttgaccttctgagccatcctgcta
tttatagaattagatagactggaacttgatttagttaagaccaaatatat
ttagatgattttgctgttccagattttaacttatcagagttccagtttag
ttatctttttcttttatactttttgtccattgtgtttatctttgatgtct
ttttggagatgtaacagtgctgatttttgtaccctgacgtcaaagaatct
tctatctatttattttccctgggcttacacagaatggtgtagaataaact
caatttgacttgaatcttgactcatctctgaaaatgtcaaagttctaaac
tgcatacctttgttcaggaatttttgaaattttgacttactcccgattct
tctgtgagcaagaaaacacactgtgctttctatctgagttcatttgaaaa
gtgcaaagtctgtctgaaagaaccgctcttcctccccaaaacatctcaac
acaaagaatgtgcctatctataaagcagcaaagccctgggctgttccagt
ggagaaagaacatagtcccatcttccctatagtggtgtggatagagaatg
cagggcagatcaaagcagaatggtacatgatgtactcataggctgtaatc
accagctgttatttccaaaatgcatctcgctttctagctttctgtcagag
atgttttcataaaactctaacctggatatatttaatctttccatttgtag
gagaagctgcttcagtttggaacatgtgatctctttgaaatgtttctgtt
gaaagcccgggtggttttgagaagtgcctgaaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42054007_42054541
seq2: B6Ng01-149B24.b_529_1062 (reverse)

seq1  GTACCCAAACCTATGGGACACAATGAAAGCATTTC-TAAGAGGGAAACTC  49
      |||||||| ||||| |||||||||||||||||||| ||||||||||||||
seq2  GTACCCAACCCTAT-GGACACAATGAAAGCATTTCTTAAGAGGGAAACTC  49

seq1  ATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAG  99
      ||||||| ||||||||| | |||||||||||||| |||||||||||||||
seq2  ATAGCTC-GAGTGCCTCTAGGAAGAAACGGGAGAGAGCACATACTAGCAG  98

seq1  CTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCA  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCA  148

seq1  AGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAA-CCA  198
      |||||||||||| |||||||||||||||||||  |||||||||||| |||
seq2  AGAGGAGTAGACAGCAGGAAATAATCAAACTC--GGGTGAAATCAACCCA  196

seq1  AGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGT  246

seq1  TCTTTG-AGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA  297
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAAAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA  296

seq1  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG  346

seq1  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTAC  397
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCTCATCCTTCTAC  396

seq1  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATT  446

seq1  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATC  497
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTAACCATC  496

seq1  TAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTT  535
      ||||||||||||||| || |||||||||||||||||||
seq2  TAAACAGTCCCATATTACTTAAAGAAATAGAAGCAGTT  534

seq1: chr16_62441141_62442025
seq2: B6Ng01-149B24.g_70_955 (reverse)

seq1  TAATTTCATGCAACTTCTCAAAACCACCC-GGCTTTCAACAGAAACATTT  49
      |||||||| || ||||||||||||||||| ||||||||||||||||||||
seq2  TAATTTCAGGC-ACTTCTCAAAACCACCCGGGCTTTCAACAGAAACATTT  49

seq1  CAAAGAGATCAACATGTTCCAAACTG-AGCAGCTTTCTCCTACAAATGGA  98
      |||||||||| ||||||||||||||| |||||| ||||||||||||||||
seq2  CAAAGAGATC-ACATGTTCCAAACTGAAGCAGC-TTCTCCTACAAATGGA  97

seq1  AAGATTAAATATATCCAGGTTAGAGTTTTATGAAAACATCTCCTGACAG-  147
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  AAGATTAAATATATCCAGGTTAGAGTTTTATGAAAACATCT-CTGACAGA  146

seq1  AAGCTAG-AAGCGAGATGCATTTTGGAAATAACAGCTGGTGATTACAGCC  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAAAGCGAGATGCATTTTGGAAATAACAGCTGGTGATTACAGCC  196

seq1  TATGAGTACATCATGTACCATTCTGC-TTGATCTGCCCTGCATTCTCTAT  245
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATGAGTACATCATGTACCATTCTGCTTTGATCTGCCCTGCATTCTCTAT  246

seq1  CCACACCACTATAGGGAAGATGGGACTATGTTCTTTCTCCACTGGAACAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCACTATAGGGAAGATGGGACTATGTTCTTTCTCCACTGGAACAG  296

seq1  CCCAGGGCTTTGCTGCTTTATAGATAGGCACATTCTTTGTGTTGAGATGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCTTTGCTGCTTTATAGATAGGCACATTCTTTGTGTTGAGATGT  346

seq1  TTTGGGGAGGAAGAGCGGTTCTTTCAGACAGACTTTGCACTTTTCAAATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAGGAAGAGCGGTTCTTTCAGACAGACTTTGCACTTTTCAAATG  396

seq1  AACTCAGATAGAAAGCACAGTGTGTTTTCTTGCTCACAGAAGAATCGGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGATAGAAAGCACAGTGTGTTTTCTTGCTCACAGAAGAATCGGGA  446

seq1  GTAAGTCAAAATTTCAAAAATTCCTGAACAAAGGTATGCAGTTTAGAACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCAAAATTTCAAAAATTCCTGAACAAAGGTATGCAGTTTAGAACT  496

seq1  TTGACATTTTCAGAGATGAGTCAAGATTCAAGTCAAATTGAGTTTATTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTTCAGAGATGAGTCAAGATTCAAGTCAAATTGAGTTTATTCT  546

seq1  ACACCATTCTGTGTAAGCCCAGGGAAAATAAATAGATAGAAGATTCTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTCTGTGTAAGCCCAGGGAAAATAAATAGATAGAAGATTCTTTG  596

seq1  ACGTCAGGGTACAAAAATCAGCACTGTTACATCTCCAAAAAGACATCAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGGGTACAAAAATCAGCACTGTTACATCTCCAAAAAGACATCAAA  646

seq1  GATAAACACAATGGACAAAAAGTATAAAAGAAAAAGATAACTAAACTGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACACAATGGACAAAAAGTATAAAAGAAAAAGATAACTAAACTGGA  696

seq1  ACTCTGATAAGTTAAAATCTGGAACAGCAAAATCATCTAAATATATTTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATAAGTTAAAATCTGGAACAGCAAAATCATCTAAATATATTTGG  746

seq1  TCTTAACTAAATCAAGTTCCAGTCTATCTAATTCTATAAATAGCAGGATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTAAATCAAGTTCCAGTCTATCTAATTCTATAAATAGCAGGATG  796

seq1  GCTCAGAAGGTCAAAGTGCTTGACCCTAAGCCTGACAACATTAGTATAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAAGGTCAAAGTGCTTGACCCTAAGCCTGACAACATTAGTATAAT  846

seq1  CCACAGAATTTACAATGTCAAAGAAAGGAGAGAAGAATTC  885
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAATTTACAATGTCAAAGAAAGGAGAGAAGAATTC  886