BAC Information

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BAC

Clone NameB6Ng01-150E02
Chromosome16 (Build37)
Map Location 91,013,750 - 91,087,286
singlet/doubletdoublet
Overlap gene1810007M14Rik, 4932438H23Rik
Upstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1
Downstream geneH3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150E02.bB6Ng01-150E02.g
ACCDH946381DH946382
length7501,113
definitionDH946381|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E02, 5' end.DH946382|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,086,746 - 91,087,286)(91,013,750 - 91,014,870)
sequence
gaattcactatgtagctcaaactcacagggattctcctgcctctgtctcc
caagtcctgggattaaaggtatgtgcaactatgcctagttttagcctgac
ttcttaaagaacccaggactgtcagctcagaaatagcaccactcacagtg
agctggacccgccctcatcaattgctaattaagaaaatgccctacagatg
ggtcttaaggagttattttctcaattgagtttccttcctttcagatgact
ccagcttgtgtcaagttgatagaaaactagccccctaactgaccacagta
tttcaaataagtaactgctgagtgttcagttctagatgagattgctctct
catccccttcaaggcccagagaataacctgaagaggaagtagaagagaca
gtgagactgggctgggaaatgctggcttctagttagggtgtggcggttgc
cattatctgctcccagcagctgggtttcctgctgaagagctgcacaagat
gggtggggcggctcctgggccctcctctccttgaagaactcttggctttc
cttagcagaatggtcactggtcacttgcttcgtccaggcttcacacaccc
aaccctgattgatttccatgggtcaccaaaaaataaaagcagcaaagcaa
acgagcaaaaaaaagacacaaaaccaggagaggaaccttctggaaaaaag
aatgtgtgtggatggaatgagagagggtaaagttgtgtgtgtgtgtgtgt

gaattccatatttagtgctctttactcattcaggagtgacaacctcgtcg
agacataacgagcactttctatatgcagttctggtctccattcaccttgc
atcagactcctaggacagtgtccaagcctgttcctaagtgttagcatagg
cagttggagcttatccaaacaattactaaagctggatataggaagagtgg
ttttatactgatgggcttggaaacagtttaaggcccaaatacatatttgt
gtttgttttaattcatgagaatgagtgctctgaaatttaatttcccttag
gagccaagaaagattaataacaacaacaatgacaaaaaaaaaaaaaccaa
aaaacaaaaaacacaaccctcatccttaatgaatatgtggagataagtca
taatacctccagaactgatggagaaaggagagcacaacactgtccaagtg
cacactggcctgttaacagcctcaccatatgaaccactgtatgtatgctc
tgaacttagtcaccagcaagatacaacaaaaggcgtgtttaaaaattaat
ttaatgcttggctaaagcttaattacatatatatttttcaaacgatagtc
ctgaatttctgaaaagttactcttctgaaaatcacagaatcagaaagcat
caaccttaaaacaagtttctctgagtatttacagtgtggtagaaacatta
cagaataccatggatagtaaattgcctgggtgtgtctgatcagcaaggca
tgttctttattgcatatataactcacatatgtgggattcaaaacaggata
gactaaagaaatgcatatctatagctgggcagggaagacatagtgagaaa
ggtcagtcagcccaggccatgcagttagttgtggctcatcctaccccacc
actactgcatatgtcgccttcaggctcgttttaaacccacagctgcctcc
aggcagactcccagaagtcccacacctcccctcacgacaaagtcttattt
cagtttcattttagcagcacaactacagtgacagcagtcactgtgggggt
gagttcatcactgccagcccatcgctgcttgcatgcagtattcccttaga
tgatgcttattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91086746_91087286
seq2: B6Ng01-150E02.b_255_795 (reverse)

seq1  ACACACACACACACACAACTTTACCCTCTCTCATTCCATCCACACACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAACTTTACCCTCTCTCATTCCATCCACACACATT  50

seq1  CTTTTTTCCAGAAGGTTCCTCTCCTGGTTTTGTGTCTTTTTTTTGCTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCAGAAGGTTCCTCTCCTGGTTTTGTGTCTTTTTTTTGCTCGT  100

seq1  TTGCTTTGCTGCTTTTATTTTTTGGTGACCCATGGAAATCAATCAGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCTGCTTTTATTTTTTGGTGACCCATGGAAATCAATCAGGGTT  150

seq1  GGGTGTGTGAAGCCTGGACGAAGCAAGTGACCAGTGACCATTCTGCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTGAAGCCTGGACGAAGCAAGTGACCAGTGACCATTCTGCTAAG  200

seq1  GAAAGCCAAGAGTTCTTCAAGGAGAGGAGGGCCCAGGAGCCGCCCCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAAGAGTTCTTCAAGGAGAGGAGGGCCCAGGAGCCGCCCCACCC  250

seq1  ATCTTGTGCAGCTCTTCAGCAGGAAACCCAGCTGCTGGGAGCAGATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGCAGCTCTTCAGCAGGAAACCCAGCTGCTGGGAGCAGATAATG  300

seq1  GCAACCGCCACACCCTAACTAGAAGCCAGCATTTCCCAGCCCAGTCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGCCACACCCTAACTAGAAGCCAGCATTTCCCAGCCCAGTCTCAC  350

seq1  TGTCTCTTCTACTTCCTCTTCAGGTTATTCTCTGGGCCTTGAAGGGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCTACTTCCTCTTCAGGTTATTCTCTGGGCCTTGAAGGGGATG  400

seq1  AGAGAGCAATCTCATCTAGAACTGAACACTCAGCAGTTACTTATTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAATCTCATCTAGAACTGAACACTCAGCAGTTACTTATTTGAAA  450

seq1  TACTGTGGTCAGTTAGGGGGCTAGTTTTCTATCAACTTGACACAAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGTCAGTTAGGGGGCTAGTTTTCTATCAACTTGACACAAGCTGG  500

seq1  AGTCATCTGAAAGGAAGGAAACTCAATTGAGAAAATAACTC  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGAAAGGAAGGAAACTCAATTGAGAAAATAACTC  541

seq1: chr16_91013750_91014870
seq2: B6Ng01-150E02.g_66_1178

seq1  GAATTCCATATTTAGTGCTCTTTACTCATTCAGGAGTGACAACCTCGTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTTAGTGCTCTTTACTCATTCAGGAGTGACAACCTCGTCG  50

seq1  AGACATAACGAGCACTTTCTATATGCAGTTCTGGTCTCCATTCACCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAACGAGCACTTTCTATATGCAGTTCTGGTCTCCATTCACCTTGC  100

seq1  ATCAGACTCCTAGGACAGTGTCCAAGCCTGTTCCTAAGTGTTAGCATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTCCTAGGACAGTGTCCAAGCCTGTTCCTAAGTGTTAGCATAGG  150

seq1  CAGTTGGAGCTTATCCAAACAATTACTAAAGCTGGATATAGGAAGAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGCTTATCCAAACAATTACTAAAGCTGGATATAGGAAGAGTGG  200

seq1  TTTTATACTGATGGGCTTGGAAACAGTTTAAGGCCCAAATACATATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACTGATGGGCTTGGAAACAGTTTAAGGCCCAAATACATATTTGT  250

seq1  GTTTGTTTTAATTCATGAGAATGAGTGCTCTGAAATTTAATTTCCCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTAATTCATGAGAATGAGTGCTCTGAAATTTAATTTCCCTTAG  300

seq1  GAGCCAAGAAAGATTAATAACAACAACAATGACAAAAAAAAAAAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGAAAGATTAATAACAACAACAATGACAAAAAAAAAAAAACCAA  350

seq1  AAAACAAAAAACACAACCCTCATCCTTAATGAATATGTGGAGATAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAACACAACCCTCATCCTTAATGAATATGTGGAGATAAGTCA  400

seq1  TAATACCTCCAGAACTGATGGAGAAAGGAGAGCACAACACTGTCCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTCCAGAACTGATGGAGAAAGGAGAGCACAACACTGTCCAAGTG  450

seq1  CACACTGGCCTGTTAACAGCCTCACCATATGAACCACTGTATGTATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGCCTGTTAACAGCCTCACCATATGAACCACTGTATGTATGCTC  500

seq1  TGAACTTAGTCACCAGCAAGATACAACAAAAGGCGTGTTTAAAAATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAGTCACCAGCAAGATACAACAAAAGGCGTGTTTAAAAATTAAT  550

seq1  TTAATGCTTGGCTAAAGCTTAATTACATATATATTTTTCAAACGATAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTGGCTAAAGCTTAATTACATATATATTTTTCAAACGATAGTC  600

seq1  CTGAATTTCTGAAAAGTTACTCTTCTGAAAATCACAGAATCAGAAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCTGAAAAGTTACTCTTCTGAAAATCACAGAATCAGAAAGCAT  650

seq1  CAACCTTAAAACAAGTTTCTCTGAGTATTTACAGTGTGGTAGAAACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTAAAACAAGTTTCTCTGAGTATTTACAGTGTGGTAGAAACATTA  700

seq1  CAGAATACCATGGATAGTAAATTGCCTGGGTGTGTCTGATCAGCAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACCATGGATAGTAAATTGCCTGGGTGTGTCTGATCAGCAAGGCA  750

seq1  TGTTCTTTATTGCATATATAACTCACATATGTGGGATTCAAAACAGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTATTGCATATATAACTCACATATGTGGGATTCAAAACAGGATA  800

seq1  GACTAAAGAAATGCATATCTATAGCTGGGCAGGGAAGACAATAGTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACTAAAGAAATGCATATCTATAGCTGGGCAGGGAAGAC-ATAGTGAGAA  849

seq1  AGGTCAGTCAGCCCAGGCCATGCAGTTAGTTTGTGGCTCATCCTACCCCA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGTCAGTCAGCCCAGGCCATGCAGTTAG-TTGTGGCTCATCCTACCCCA  898

seq1  -CACTACTGCATATGTCGCC-TCAGGCTCGTATTAAACCCACAGCTGCCT  948
       ||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CCACTACTGCATATGTCGCCTTCAGGCTCGTTTTAAACCCACAGCTGCCT  948

seq1  CCAGGGCAGACTCCCAGAAGTCCCACA-CTCACTCAACGACAAAGTCTTA  997
      ||| ||||||||||||||||||||||| ||| |   ||||||||||||||
seq2  CCA-GGCAGACTCCCAGAAGTCCCACACCTCCCCTCACGACAAAGTCTTA  997

seq1  TTTCAGTTTTCATTTTAAGGCAGCACAACTACAGTGACAGCAGTCACTGT  1047
      |||||| ||||||||||  |||||||||||||||||||||||||||||||
seq2  TTTCAG-TTTCATTTTA--GCAGCACAACTACAGTGACAGCAGTCACTGT  1044

seq1  GGGGGGTGAAGGTCATCACCTGCCAGCCCTTCAGCTGC-TGCAGTGCAGT  1096
       ||||||| || |||||| |||||||||| || ||||| |||| ||||||
seq2  -GGGGGTG-AGTTCATCA-CTGCCAGCCCATC-GCTGCTTGCA-TGCAGT  1089

seq1  ATTTCCCTAAGATGATTGCTATTGG  1121
      | |||||| |||||||   ||||||
seq2  A-TTCCCTTAGATGATGCTTATTGG  1113