BAC Information

Click to search

BAC

Clone NameB6Ng01-150J06
Chromosome16 (Build37)
Map Location 52,969,205 - 52,970,321
singlet/doubletsinglet
Overlap geneLOC667895
Upstream geneCblb, Alcam, LOC100043430
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150J06.bB6Ng01-150J06.g
ACCDH946623DH946624
length1,093874
definitionDH946623|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J06, 5' end.DH946624|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgtagacaagatgggcttgaaccacagaaatctacctccc
tctgttttcttggtactaagaaaaaagggataaaccatcacatcaggaca
attttaacttttttatctttatataaaatattttcttttcagttttttat
aagtaaacataagaaaatatcatttttctcttaaatccaaataagttttt
tataaattgttattatagtagcttttaatgagggccagaacatgtcttct
aagttctatttttaaaagatatttttgatatttaaatgattattactcat
gttaatctaacttgcaatagataagtgggtgacagtcgatatactccatg
tctttgttttcttgtcattctctggcatgtgacatgttcttgattataac
ttagaggtaagtttcctgcagtcacatcggctgaactagattgacatgtt
attttcttaagctatgcataccctggaggtggctggttaattgttatgtg
aatcatctgacacatgaaaatcaaacaccattatgtgaccataatttcaa
aagattcatttgaaaaccatggggaactctggcaggaatagaaatggctt
atatagagacattatcacctggagcaggtagactcaaaaagtgtgaatgc
ttcagtgcttcttagaagggggaacaaaatatccacaggaggaagtatgg
ggaccaagtgtggagcagagactgaaggaaaggccagacagagagtgccc
catctgcgaatccatcccatatacagtcaccaaagctagattctattgtt
gatacctggaagtgcttgctgaaaggagcctgaaatgggtgtcttctgag
aggctctggcagaacctgacagatacagtggtggatgctcacagccaacc
attggactgagtgtggttccccaatggagagttggagaaggactgaagga
gcttagagatttgcagcctcatggggagagcagcagtgtcaagtggccag
ataccctagagctccaggactgacacacaaaagtacacatgagacccatg
ctcacatcatatttgcagggatgcttttgatatcagtgggcag

gaattctcttttgtcagttattaagatagctacctgtgtccatttgcttg
gaatttttcccacccttttatcatgcagtaatctctagtcttgatttgaa
tacatgtttcttggggaccacagaaggaaaaaatcctgttggaaactctg
atctcttaatcagtaaggaattaaggctactatattgacagctattaatt
agcagtgtttgttgattcctgttattttgatttttggtcccatctcctga
tatttgccttgctggtctgagactatttatttcttgtggctttttttggc
gggtgtagttaacctcattagtttggtattttccttccagtgacttcttt
attcctggctttatagatagattttgtttaaattggtttcattgtagaat
atctttcttcctccgtctattgtgatacaaatttatgctggataaaataa
tctaagttggcacctctggtctcttagaatttggagaatatccatccagg
cttttctggcttatgacatctatttgaagagtcaagtgttaaacataaaa
gtttgaatttatatgttctttagtctcttttcttgtactgtttagtattc
tttctttgtcctatacacttagtatttggataactatgtgtcatagggaa
tttctcttctgataatgtatatttgataatttgtatgcttcttgtatctt
gataggtacctcttccattaggctatggaaactttcttctatgattttgg
tgataatattttctgtgtctttgacctgaatttctcttcttcatctattc
ctatattcatacatttggtcttctcataatgttccatatttcctagatgt
attgtacctgggggtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52969205_52970321
seq2: B6Ng01-150J06.b_45_1137

seq1  GAATTCACTGTGTAGACAAGATGGGCTTGAACCACAGAAATCTACCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGACAAGATGGGCTTGAACCACAGAAATCTACCTCCC  50

seq1  TCTGTTTTCTTGGTACTAAGAAAAAAGGGATAAACCATCACATCAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTTGGTACTAAGAAAAAAGGGATAAACCATCACATCAGGACA  100

seq1  ATTTTAACTTTTTTATCTTTATATAAAATATTTTCTTTTCAGTTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTTTTTTATCTTTATATAAAATATTTTCTTTTCAGTTTTTTAT  150

seq1  AAGTAAACATAAGAAAATATCATTTTTCTCTTAAATCCAAATAAGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACATAAGAAAATATCATTTTTCTCTTAAATCCAAATAAGTTTTT  200

seq1  TATAAATTGTTATTATAGTAGCTTTTAATGAGGGCCAGAACATGTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTGTTATTATAGTAGCTTTTAATGAGGGCCAGAACATGTCTTCT  250

seq1  AAGTTCTATTTTTAAAAGATATTTTTGATATTTAAATGATTATTACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATTTTTAAAAGATATTTTTGATATTTAAATGATTATTACTCAT  300

seq1  GTTAATCTAACTTGCAATAGATAAGTGGGTGACAGTCGATATACTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTAACTTGCAATAGATAAGTGGGTGACAGTCGATATACTCCATG  350

seq1  TCTTTGTTTTCTTGTCATTCTCTGGCATGTGACATGTTCTTGATTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTCTTGTCATTCTCTGGCATGTGACATGTTCTTGATTATAAC  400

seq1  TTAGAGGTAAGTTTCCTGCAGTCACATCGGCTGAACTAGATTGACATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTAAGTTTCCTGCAGTCACATCGGCTGAACTAGATTGACATGTT  450

seq1  ATTTTCTTAAGCTATGCATACCCTGGAGGTGGCTGGTTAATTGTTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAAGCTATGCATACCCTGGAGGTGGCTGGTTAATTGTTATGTG  500

seq1  AATCATCTGACACATGAAAATCAAACACCATTATGTGACCATAATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTGACACATGAAAATCAAACACCATTATGTGACCATAATTTCAA  550

seq1  AAGATTCATTTGAAAACCATGGGGAACTCTGGCAGGAATAGAAATGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATTTGAAAACCATGGGGAACTCTGGCAGGAATAGAAATGGCTT  600

seq1  ATATAGAGACATTATCACCTGGAGCAGGTAGACTCAAAAAGTGTGAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGACATTATCACCTGGAGCAGGTAGACTCAAAAAGTGTGAATGC  650

seq1  TTCAGTGCTTCTTAGAAGGGGGAACAAAATATCCACAGGAGGAAGTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTTCTTAGAAGGGGGAACAAAATATCCACAGGAGGAAGTATGG  700

seq1  GGACCAAGTGTGGAGCAGAGACTGAAGGAAAGGCCAGACAGAGAGTGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGTGTGGAGCAGAGACTGAAGGAAAGGCCAGACAGAGAGTGCCC  750

seq1  CATCTGCGAATCCATCCCATATACAGTCACCAAAGCTAGATTCTATTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCGAATCCATCCCATATACAGTCACCAAAGCTAGATTCTATTGTT  800

seq1  GATACCTGGAAGTGCTTGCTGAAAGGAGCCTGAAATGGGTGTCTTCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGGAAGTGCTTGCTGAAAGGAGCCTGAAATGGGTGTCTTCTGAG  850

seq1  AGGCTCTGGCAGAACCTGACAGATACAGTGGTGGATGCTCACAGCCAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGGCAGAACCTGACAGATACAGTGGTGGATGCTCACAGCCAACC  900

seq1  ATTGGACTGAGTGTGGTTCCCCAATGGAAGAGTTGGAGAAGGGACTGAAG  950
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  ATTGGACTGAGTGTGGTTCCCCAATGG-AGAGTTGGAGAA-GGACTGAAG  948

seq1  GAGCTTAGGAGATTTGCAGCCCCATGGGGAGGAGCAGCAGTGTCAAGTGG  1000
      ||||||| ||||||||||||| |||||||| |||||||||||||||||||
seq2  GAGCTTA-GAGATTTGCAGCCTCATGGGGA-GAGCAGCAGTGTCAAGTGG  996

seq1  CCAGATACCCTAGAGCTCCCAGGGACTGGACCACCAACCAAAAAGTACAC  1050
      |||||||||||||||||||   ||||||   |||      ||||||||||
seq2  CCAGATACCCTAGAGCTCC--AGGACTGACACAC------AAAAGTACAC  1038

seq1  ATGGAGGAACCCATGGCTCCAACATCATATGTGGCAGGGGATGGCCTTTT  1100
      || |||  |||||| ||||  ||||||||| | ||| ||||||  |||||
seq2  AT-GAG--ACCCAT-GCTC--ACATCATAT-TTGCA-GGGATG--CTTTT  1078

seq1  TGGATATCAGTGGGCAG  1117
        |||||||||||||||
seq2  --GATATCAGTGGGCAG  1093


| Home | SequenceCutter | Blast | Download |