BAC Information

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BAC

Clone NameB6Ng01-150O24
Chromosome16 (Build37)
Map Location 79,162,929 - 79,302,344
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150O24.bB6Ng01-150O24.g
ACCDH946886DH946887
length1,095407
definitionDH946886|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O24, 5' end.DH946887|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,301,242 - 79,302,344)(79,162,929 - 79,163,339)
sequence
gaattctgtatataacagtcaagtccagtttgcattttatatctctggca
atcctgtcatggcatttactatgataatattctcaactgccgcataattt
aaaatgtatattccatgaaatcatgcaactatctgtttctttgttgaatt
gtcaataattataatgattccctggtttctaaaatgatgcttaatgcata
gaaaatattaaattaggcttctgaaataaacagtatatttggtaaatatt
ttaacctaatggaatgggagatataacatgtatgtttggagatgatataa
catttaactatctctcaggtttccccacaatgacagtgataaattatatg
gttcttggaggaaaaaggacaggcttaagcatttagtgttatgaaccctt
tctaataacctaatgttacatacatcatttaaattatgtaatttatcaat
tatgactataaaagaggaaagatgatacaatatttgtcttcattttagag
atcagcagtgacatgaaagagaattttaatgaagtttttagaatatccca
aagaaagaagaagacaactcacattgagatgccccccaattactagttag
gttgtatttttcatgggttttatcacttaagcactataattaattctcaa
tgaatatttcaggatttgtgtataaatgaataacaagtcactaaagttta
caaagaaaacattgctaagaacttcaaaatgattgccattgaaatttaac
attttacccttgttggcctgttacaaaaattattaatctgaaaattatat
tgttacttatgaaaataattgtgaaatacatactagatgttagtggcatg
ttggttaaaaactttatgtttgaacatctacacattttgcaaaatgtttg
tggtggcattaaaaaccttatggtcctttgaatttgcaactaaattttca
aatccttgccacatttttccattgtaaattagcatttacttataaattat
catatatgctttattatggtatagaataacatattcataaaatctcagaa
acctagaaataaaaaaatagcaataatttactatttgattactag
tccctctttcatcagccattaactgccaatgtttccttaagtagaggcaa
gcctgcacactctgggatgttgtgctgatgtgaacctgcaaaggtcttgt
gtataatgtcacaaaaacggtgtaactgtactgtcatgtttgggaaccat
tttttttgtttgtttgttggttggttggttggttggttggtttatggcca
tctattgctccaggctcttacagtatttctcagtcattggagatggtctt
tgaacattgggagagagacaatggatactatctttgaatcttcagataag
tgttttcatttggaataaagacagaggtgatgggaatggggataatgttt
gaaatgttaataagtaacataaccaataaaaaatgaaaagagatatagag
agagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79301242_79302344
seq2: B6Ng01-150O24.b_46_1140 (reverse)

seq1  CTAGTAATACAATAAGTAAATTATTGCTTATTTTTTAATTTCTAGGTTTC  50
      |||||||| |||  ||||||||||||| |||||||| |||||||||||||
seq2  CTAGTAAT-CAAATAGTAAATTATTGC-TATTTTTTTATTTCTAGGTTTC  48

seq1  TGAGATTTTATGGAATATGTTATTCTATAACCATAATAAAGCATATATGA  100
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TGAGATTTTAT-GAATATGTTATTCTAT-ACCATAATAAAGCATATATGA  96

seq1  TAATTTTATAAGTAAATGCTAATTTACAATGGAAAAATGTGGCAAGGATT  150
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAA-TTTATAAGTAAATGCTAATTTACAATGGAAAAATGTGGCAAGGA-T  144

seq1  TTGAAAATTTAGTTGCAAAATTCAAAGGACCATAAAGGTTTTTAATGCCA  200
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  TTGAAAATTTAGTTGC-AAATTCAAAGGACCAT-AAGGTTTTTAATGCCA  192

seq1  CCACAAACATTTTGCAAAATGTGTAGATGTTCAAACATAAAGTTTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACATTTTGCAAAATGTGTAGATGTTCAAACATAAAGTTTTTAAC  242

seq1  CAACATGCCACTAACATCTAGTATGTATTTCACAATTATTTTCATAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCCACTAACATCTAGTATGTATTTCACAATTATTTTCATAAGTA  292

seq1  ACAATATAATTTTCAGATTAATAATTTTTGTAACAGGCCAACAAGGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAATTTTCAGATTAATAATTTTTGTAACAGGCCAACAAGGGTAA  342

seq1  AATGTTAAATTTCAATGGCAATCATTTTGAAGTTCTTAGCAATGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAATTTCAATGGCAATCATTTTGAAGTTCTTAGCAATGTTTTCT  392

seq1  TTGTAAACTTTAGTGACTTGTTATTCATTTATACACAAATCCTGAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACTTTAGTGACTTGTTATTCATTTATACACAAATCCTGAAATAT  442

seq1  TCATTGAGAATTAATTATAGTGCTTAAGTGATAAAACCCATGAAAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGAATTAATTATAGTGCTTAAGTGATAAAACCCATGAAAAATAC  492

seq1  AACCTAACTAGTAATTGGGGGGCATCTCAATGTGAGTTGTCTTCTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAACTAGTAATTGGGGGGCATCTCAATGTGAGTTGTCTTCTTCTTT  542

seq1  CTTTGGGATATTCTAAAAACTTCATTAAAATTCTCTTTCATGTCACTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGATATTCTAAAAACTTCATTAAAATTCTCTTTCATGTCACTGCT  592

seq1  GATCTCTAAAATGAAGACAAATATTGTATCATCTTTCCTCTTTTATAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAAAATGAAGACAAATATTGTATCATCTTTCCTCTTTTATAGTC  642

seq1  ATAATTGATAAATTACATAATTTAAATGATGTATGTAACATTAGGTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATAAATTACATAATTTAAATGATGTATGTAACATTAGGTTATT  692

seq1  AGAAAGGGTTCATAACACTAAATGCTTAAGCCTGTCCTTTTTCCTCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGTTCATAACACTAAATGCTTAAGCCTGTCCTTTTTCCTCCAAG  742

seq1  AACCATATAATTTATCACTGTCATTGTGGGGAAACCTGAGAGATAGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATAATTTATCACTGTCATTGTGGGGAAACCTGAGAGATAGTTAA  792

seq1  ATGTTATATCATCTCCAAACATACATGTTATATCTCCCATTCCATTAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATATCATCTCCAAACATACATGTTATATCTCCCATTCCATTAGGT  842

seq1  TAAAATATTTACCAAATATACTGTTTATTTCAGAAGCCTAATTTAATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTTACCAAATATACTGTTTATTTCAGAAGCCTAATTTAATATT  892

seq1  TTCTATGCATTAAGCATCATTTTAGAAACCAGGGAATCATTATAATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGCATTAAGCATCATTTTAGAAACCAGGGAATCATTATAATTATT  942

seq1  GACAATTCAACAAAGAAACAGATAGTTGCATGATTTCATGGAATATACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCAACAAAGAAACAGATAGTTGCATGATTTCATGGAATATACAT  992

seq1  TTTAAATTATGCGGCAGTTGAGAATATTATCATAGTAAATGCCATGACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTATGCGGCAGTTGAGAATATTATCATAGTAAATGCCATGACAG  1042

seq1  GATTGCCAGAGATATAAAATGCAAACTGGACTTGACTGTTATATACAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAGAGATATAAAATGCAAACTGGACTTGACTGTTATATACAGAA  1092

seq1  TTC  1103
      |||
seq2  TTC  1095

seq1: chr16_79162929_79163339
seq2: B6Ng01-150O24.g_68_480

seq1  GAATTCTCCCTCTTTCATCAGCCATTAACTGCCAATGTTTCCTTAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCTTTCATCAGCCATTAACTGCCAATGTTTCCTTAAGTAG  50

seq1  AGGCAAGCCTGCACACTCTGGGATGTTGTGCTGATGTGAACCTGCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCTGCACACTCTGGGATGTTGTGCTGATGTGAACCTGCAAAGG  100

seq1  TCTTGTGTATAATGTCACAAAAACGGTGTAACTGTACTGTCATGTTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTATAATGTCACAAAAACGGTGTAACTGTACTGTCATGTTTGGG  150

seq1  AACCATTTTTTTTGTTTGTTTGTTGGTTGGTTGGTTGGTTGGTTGGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTTTTTTGTTTGTTTGTTGGTTGGTTGGTTGGTTGGTTGGTTTA  200

seq1  TGGCCATCTATTGCTCCAGGCTCTTACAGTATTTCTCAGTCATTGGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCTATTGCTCCAGGCTCTTACAGTATTTCTCAGTCATTGGAGAT  250

seq1  GGTCTTTGAACATTGGGAGAGAGACAATGGATACTATCTTTGAATCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGAACATTGGGAGAGAGACAATGGATACTATCTTTGAATCTTCA  300

seq1  GATAAGTGTTTTCATTTGGAATAAAGACAGAGGTGATGGGAATGGGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGTTTTCATTTGGAATAAAGACAGAGGTGATGGGAATGGGGATA  350

seq1  ATGTTTGAAATGTAAATAAGTAACATAACCAATAAAAAATGAAAAGAGAG  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  ATGTTTGAAATGTTAATAAGTAACATAACCAATAAAAAATGAAAAGAGAT  400

seq1  AGAGAGAGAGA--  411
      | |||||||||  
seq2  ATAGAGAGAGATA  413