BAC Information

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BAC

Clone NameB6Ng01-152F21
Chromosome16 (Build37)
Map Location 24,321,397 - 24,462,430
singlet/doubletdoublet
Overlap geneLOC666580, LOC100043564, 1110054M08Rik, Lpp
Upstream geneSt6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneA730098P11Rik, 5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152F21.bB6Ng01-152F21.g
ACCDH947959DH947960
length1,161312
definitionDH947959|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F21, 5' end.DH947960|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,461,275 - 24,462,430)(24,321,397 - 24,321,708)
sequence
gaattctccctacactgcactgatctgccccctgcccagctcttggcctc
tcacctacacagctgagggctcaagcaagaattccagtcatttccaccaa
agaagctctgactgcggactaaagccaaaactgtagaggtgggaaagaac
agcgttagctgaaagccttgtgattctcctcccaagactggggccaattt
tggattctatggtgttgtgtatcaatgttttcatgaaggatttcaaatgg
aattttcctctaaaaatttcccaggcaaacagagatgctgagtttatttc
agtaggtccctatcacccccaactctcttcttaacatatcatatgtaacc
tggaagcagcagtccctaagagtcctataaagcccacatcctgggaatca
tgccacgtgactccctgccattgcccatgagctggctgtagtaataccat
ctaacaaagagaaaacaagcaagcaaccacggcttacaataatggaaacc
cttttgacactcagagaagccaactgccttgggagcttgctccacagaca
agtctgcacagtcaagagttgaagctctcaggccagcaacctaagggcac
ttaactactatgatcatgtgaatgggctttgtcgaggatttcccccagtg
gcgccttcagaggagtctacagggacagaaaactcatttgcaacctcatg
agaagtcatgtgggccccaacgaagctgccaaatctctaacctgcagaaa
ctatgattcaaaagatgtttcgtattttagttgataatttggggaaactg
ttacacaggataatactgataatactgcatcagagtctgaaatgttccaa
ttctgagatacattaatggtccctccctccaaagctaccatttttcatta
agcccaagaatcagaccaccaaggttcagtatcaggaactcttcaaagaa
acactagtgctcaaggacacagaaatgctctctggctttgaagagcagac
cctggtccacgcataaataactgtaatattaacaccagcacataaaacgt
cactgcatcgttttctgctgcagagcgtctggttaagagagatcagctgg
aaaaaggaaattgactggttcaatcaaatttggatggacctacacccact
ctcagatactg
caaatcctctaaacattctctcttctcacagctctggtgttattaaagga
atatcctgtcatggaccacaaaatggatggaatcagaagatggtatgtca
agtgaaataagccaaccgtggaaacaccaatgcaccatgatcctgctttt
tttttgttgttgttttttgttttgagacagggtttttctgtgtagccctg
gctgtcctggaactcactctgtagaccatgctggtctcaaactcagaaat
ccacctgcctctgcctcccaagtgctgggattaaaggcatgtgcctccac
tgcactatcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24461275_24462430
seq2: B6Ng01-152F21.b_45_1205 (reverse)

seq1  CAGTATCTGAGAGTGGGTGTAGGTCATATCAAAATTTGATTGAACAGGTC  50
      |||||||||||||||||||||||||  ||| ||||||||||||||  |||
seq2  CAGTATCTGAGAGTGGGTGTAGGTC-CATCCAAATTTGATTGAACCAGTC  49

seq1  AAAATTTCTTTCTCCAGCTGATCTC---TAACCAGACG--CTGCAGCAGA  95
       || || |||| |||||||||||||   ||||||||||  ||||||||||
seq2  -AATTTCCTTTTTCCAGCTGATCTCTCTTAACCAGACGCTCTGCAGCAGA  98

seq1  AAACGATGCAGTGACGTTTTATGTGCTGGTGTTATATTTACAGTTATTTA  145
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  AAACGATGCAGTGACGTTTTATGTGCTGGTGTTAATATTACAGTTATTTA  148

seq1  TGCGTGG-CCAGGGTCTGCTC-TCAAAGCCAGAGAGCATTTCTGTGTCCT  193
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCGTGGACCAGGGTCTGCTCTTCAAAGCCAGAGAGCATTTCTGTGTCCT  198

seq1  TGAGCACTAGTGTTTCTTTGAAGAGTTCCTGATACTGAACCTTGGTGGTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTAGTGTTTCTTTGAAGAGTTCCTGATACTGAACCTTGGTGGTC  248

seq1  TGATTCTTGGGCTTAATGAAAAATGGTAGCTTTGGAGGGAGGGACCATTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTGGGCTTAATGAAAAATGGTAGCTTTGGAGGGAGGGACCATTA  298

seq1  ATGTATCTCAGAATTGGAACATTTCAGACTCTGATGCAGTATTATCAGTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTCAGAATTGGAACATTTCAGACTCTGATGCAGTATTATCAGTA  348

seq1  TTATCCTGTGTAACAGTTTCCCCAAATTATCAACTAAAATACGAAACATC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGTGTAACAGTTTCCCCAAATTATCAACTAAAATACGAAACATC  398

seq1  TTTTGAATCATAGTTTCTGCAGGTTAGAGATTTGGCAGCTTCGTTGGGGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATCATAGTTTCTGCAGGTTAGAGATTTGGCAGCTTCGTTGGGGC  448

seq1  CCACATGACTTCTCATGAGGTTGCAAATGAGTTTTCTGTCCCTGTAGACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGACTTCTCATGAGGTTGCAAATGAGTTTTCTGTCCCTGTAGACT  498

seq1  CCTCTGAAGGCGCCACTGGGGGAAATCCTCGACAAAGCCCATTCACATGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAGGCGCCACTGGGGGAAATCCTCGACAAAGCCCATTCACATGA  548

seq1  TCATAGTAGTTAAGTGCCCTTAGGTTGCTGGCCTGAGAGCTTCAACTCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTAGTTAAGTGCCCTTAGGTTGCTGGCCTGAGAGCTTCAACTCTT  598

seq1  GACTGTGCAGACTTGTCTGTGGAGCAAGCTCCCAAGGCAGTTGGCTTCTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCAGACTTGTCTGTGGAGCAAGCTCCCAAGGCAGTTGGCTTCTC  648

seq1  TGAGTGTCAAAAGGGTTTCCATTATTGTAAGCCGTGGTTGCTTGCTTGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCAAAAGGGTTTCCATTATTGTAAGCCGTGGTTGCTTGCTTGTT  698

seq1  TTCTCTTTGTTAGATGGTATTACTACAGCCAGCTCATGGGCAATGGCAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGTTAGATGGTATTACTACAGCCAGCTCATGGGCAATGGCAGG  748

seq1  GAGTCACGTGGCATGATTCCCAGGATGTGGGCTTTATAGGACTCTTAGGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACGTGGCATGATTCCCAGGATGTGGGCTTTATAGGACTCTTAGGG  798

seq1  ACTGCTGCTTCCAGGTTACATATGATATGTTAAGAAGAGAGTTGGGGGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCTTCCAGGTTACATATGATATGTTAAGAAGAGAGTTGGGGGTG  848

seq1  ATAGGGACCTACTGAAATAAACTCAGCATCTCTGTTTGCCTGGGAAATTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGACCTACTGAAATAAACTCAGCATCTCTGTTTGCCTGGGAAATTT  898

seq1  TTAGAGGAAAATTCCATTTGAAATCCTTCATGAAAACATTGATACACAAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAAAATTCCATTTGAAATCCTTCATGAAAACATTGATACACAAC  948

seq1  ACCATAGAATCCAAAATTGGCCCCAGTCTTGGGAGGAGAATCACAAGGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGAATCCAAAATTGGCCCCAGTCTTGGGAGGAGAATCACAAGGCT  998

seq1  TTCAGCTAACGCTGTTCTTTCCCACCTCTACAGTTTTGGCTTTAGTCCGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTAACGCTGTTCTTTCCCACCTCTACAGTTTTGGCTTTAGTCCGC  1048

seq1  AGTCAGAGCTTCTTTGGTGGAAATGACTGGAATTCTTGCTTGAGCCCTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGCTTCTTTGGTGGAAATGACTGGAATTCTTGCTTGAGCCCTCA  1098

seq1  GCTGTGTAGGTGAGAGGCCAAGAGCTGGGCAGGGGGCAGATCAGTGCAGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAGGTGAGAGGCCAAGAGCTGGGCAGGGGGCAGATCAGTGCAGT  1148

seq1  GTAGGGAGAATTC  1156
      |||||||||||||
seq2  GTAGGGAGAATTC  1161

seq1: chr16_24321397_24321708
seq2: B6Ng01-152F21.g_72_383

seq1  CAAATCCTCTAAACATTCTCTCTTCTCACAGCTCTGGTGTTATTAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTCTAAACATTCTCTCTTCTCACAGCTCTGGTGTTATTAAAGGA  50

seq1  ATATCCTGTCATGGACCACAAAATGGATGGAATCAGAAGATGGTATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGTCATGGACCACAAAATGGATGGAATCAGAAGATGGTATGTCA  100

seq1  AGTGAAATAAGCCAACCGTGGAAACACCAATGCACCATGATCCTGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATAAGCCAACCGTGGAAACACCAATGCACCATGATCCTGCTTTT  150

seq1  TTTTTGTTGTTGTTTTTTGTTTTGAGACAGGGTTTTTCTGTGTAGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTGTTTTTTGTTTTGAGACAGGGTTTTTCTGTGTAGCCCTG  200

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTCAAACTCAGAAAT  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCATGCTGGTCTCAAACTCAGAAAT  250

seq1  CCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCTCCAC  300

seq1  TGCACGATCCTG  312
      ||||| ||||||
seq2  TGCACTATCCTG  312