BAC Information

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BAC

Clone NameB6Ng01-152L10
Chromosome16 (Build37)
Map Location 91,913,213 - 92,059,496
singlet/doubletdoublet
Overlap geneItsn1, Atp5o, Mrps6
Upstream geneLOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneSlc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152L10.bB6Ng01-152L10.g
ACCDH948220DH948221
length1,109905
definitionDH948220|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L10, 5' end.DH948221|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,058,376 - 92,059,496)(91,913,213 - 91,914,115)
sequence
gaattctctcagaagaatggggatttcagcgacgactgactgactcagaa
catagctgcctccgccggccgccgaccccagtccgtgacccggctgctgg
tggtttatcatccctccaaacctgaaagtccctacctccagatcaatcaa
aagctgggggaaggcatgtcttcggaaacacaagcaaggccacaacttgg
atgaataaaactgggctaagggcacccggagcaggatttccgctggagtc
agaaaaagaaaggtcaaaagattttttttttctttttggtgtgatagcgg
tgacaagtgcgtgggtacacagccggcactggcgggctttggaggaaggc
tgtaactgatcgcggacgctgagggcaggcgatcgggaccagcggccggc
ggggacgacgagcagcttctcgacgcgtgggcgcagagcggggctggcct
gggttctcgcgcgtgtgtcctcccgcagtccttccatcggactccggaga
gccggggtccgaggcccgccccgccccctgctcggcacaccccctcccgc
gaccgcgcacacgcgcgggcatacacaccccccgcctcccgcgcgcacgc
ggccgcgccgagcgcctgacccacgcgccacccccccactttgcgcccgc
gaccacccgcgcaccgcgcgagaggacccggtgtccagcaggcaggacac
gcgggactgggaggcctagaggcggcggggcgcgcccgcgcgggaactcg
gtctgagggaaggtcacttacccgccgcatggctttcagaatcaaagcca
actcgtagcggggcatcgcccaggttggcggcgccgagtccaggagagcc
ggggtcgcgagggcggggacgcggggcgcagaggaagacgagagaggaac
acggcccggtcagctctcggacggcgaaagcaccgtgcgatcccgcgagg
ccgggtttaaaggctccggcagctgcgcagacggctcgccccgctacgag
agcccgtccactggcacgctcgcccttctccgaaggcgcttgcacttgca
cctcaactgcttctgcttgccttcagtccgtgtctgtgtccccgagcttg
cggagcgtg
gaattcaagatagaataggtagtgtggagaaacgctaagaaaatccatta
ctggtttgagggaaagacctttgggaacccgtgagccccacatgtggggt
gggaaaatgggcgatgctcctgggcatacaacaacctcttagtcatagga
acacacgcactttttgcgagaatcaggagtgtatgaccataggccaggct
tttttgtctgagttctttgggttttctctcccttaaatgctaaaagatag
gctggttatctagataacttgatttgctagtgagaagtgcaggctgtttt
ggtccctcgtttgcatctccagtctgtggtcatggcctggcctttgcatg
tctcaggctcctgggctcaggctttcctgtgttgggtggcctggcctttg
catgtctcaggctcctgggctcaggctctcctgtgttgggtggtgttcct
ttttatggtaggttctcagattttaactaggtttctagaagtactttgta
aatggtagtgtctcggtgacagaatagccactctgctgaaatctgaatgc
tccatgtgaccccagaaggtccctctccgtgtgtgtgtgtgtgtgtgtgt
gtgtgtttcaagtgatttctcaaaacgtgtatgggggcaaaggacaacag
tttacatttcatacttccaagaagcacttagagtttatttattgaagata
gtgttgacttttgtatcaagaacaacagacacacctattttttgaaacaa
gccaataaactcttcaggtagcagctttcagctgaacatgaggtagactt
taacttcgagcatgcgtggcttaccacttttcccagcagaaaacactatc
aaaacactacactttcatgtttcttgtgtttgttaagaaactgttttaaa
tgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92058376_92059496
seq2: B6Ng01-152L10.b_48_1156 (reverse)

seq1  CACGCTCCGCAGGCTCGGGGGACACAGACACGGCCCGGGAGGGCAAGCAG  50
      ||||||||||| |||| |||||||||||||||| |   || |||||||| 
seq2  CACGCTCCGCAAGCTC-GGGGACACAGACACGGAC--TGAAGGCAAGCA-  46

seq1  GAAGCCGTTGAGGTGCAAGTGCAAGGCGCCCTCCGGGAGAGGGGCGGGGC  100
      ||||| |||||||||||||||||| ||||| ||  ||||| ||||| |  
seq2  GAAGCAGTTGAGGTGCAAGTGCAA-GCGCCTTC--GGAGAAGGGCGAG--  91

seq1  GGTGCCGGGTGGGCGGGGCTCTCGGTGGGCGGGGCGAGCCGTCTGCGCAG  150
       |||||  |||| | |||||||||    ||||||||||||||||||||||
seq2  CGTGCC-AGTGGAC-GGGCTCTCG--TAGCGGGGCGAGCCGTCTGCGCAG  137

seq1  CTGCCGGAGCCTTTAAACCCGGCCTCGCGGGGTCGCACGGTGCTTTCGCC  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGCCGGAGCCTTTAAACCCGGCCTCGCGGGATCGCACGGTGCTTTCGCC  187

seq1  GTCCGGGAGCTGACC-GGCCGTGTTCCTCTCTCGTCTTCCTCTGCGCCCC  249
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCCGAGAGCTGACCGGGCCGTGTTCCTCTCTCGTCTTCCTCTGCGCCCC  237

seq1  GCGTCCCCGCCCTCGCGACCCCGGCTCTCCTGGACTCGGCGCCGCCAACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCCGCCCTCGCGACCCCGGCTCTCCTGGACTCGGCGCCGCCAACC  287

seq1  TGGGCGATGCCCCGCTACGAGTTGGCTTTGATTCTGAAAGCCATGCGGCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGATGCCCCGCTACGAGTTGGCTTTGATTCTGAAAGCCATGCGGCG  337

seq1  GGTAAGTGACCTTCCCTCAGACCGAGTTCCCGCGCGGGCGCGCCCCGCCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGACCTTCCCTCAGACCGAGTTCCCGCGCGGGCGCGCCCCGCCG  387

seq1  CCTCTAGGCCTCCCAGTCCCGCGTGTCCTGCCTGCTGGACACCGGGTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGCCTCCCAGTCCCGCGTGTCCTGCCTGCTGGACACCGGGTCCT  437

seq1  CTCGCGCGGTGCGCGGGTGGTCGCGGGCGCAAAGTGGGGGGGTGGCGCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCGCGGTGCGCGGGTGGTCGCGGGCGCAAAGTGGGGGGGTGGCGCGT  487

seq1  GGGTCAGGCGCTCGGCGCGGCCGCGTGCGCGCGGGAGGCGGGGGGTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGCGCTCGGCGCGGCCGCGTGCGCGCGGGAGGCGGGGGGTGTGT  537

seq1  ATGCCCGCGCGTGTGCGCGGTCGCGGGAGGGGGTGTGCCGAGCAGGGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGCGCGTGTGCGCGGTCGCGGGAGGGGGTGTGCCGAGCAGGGGGC  587

seq1  GGGGCGGGCCTCGGACCCCGGCTCTCCGGAGTCCGATGGAAGGACTGCGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGCCTCGGACCCCGGCTCTCCGGAGTCCGATGGAAGGACTGCGG  637

seq1  GAGGACACACGCGCGAGAACCCAGGCCAGCCCCGCTCTGCGCCCACGCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACACGCGCGAGAACCCAGGCCAGCCCCGCTCTGCGCCCACGCGT  687

seq1  CGAGAAGCTGCTCGTCGTCCCCGCCGGCCGCTGGTCCCGATCGCCTGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGCTGCTCGTCGTCCCCGCCGGCCGCTGGTCCCGATCGCCTGCCC  737

seq1  TCAGCGTCCGCGATCAGTTACAGCCTTCCTCCAAAGCCCGCCAGTGCCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGTCCGCGATCAGTTACAGCCTTCCTCCAAAGCCCGCCAGTGCCGG  787

seq1  CTGTGTACCCACGCACTTGTCACCGCTATCACACCAAAAAGAAAAAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACCCACGCACTTGTCACCGCTATCACACCAAAAAGAAAAAAAAA  837

seq1  ATCTTTTGACCTTTCTTTTTCTGACTCCAGCGGAAATCCTGCTCCGGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGACCTTTCTTTTTCTGACTCCAGCGGAAATCCTGCTCCGGGTG  887

seq1  CCCTTAGCCCAGTTTTATTCATCCAAGTTGTGGCCTTGCTTGTGTTTCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGCCCAGTTTTATTCATCCAAGTTGTGGCCTTGCTTGTGTTTCCG  937

seq1  AAGACATGCCTTCCCCCAGCTTTTGATTGATCTGGAGGTAGGGACTTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGCCTTCCCCCAGCTTTTGATTGATCTGGAGGTAGGGACTTTCA  987

seq1  GGTTTGGAGGGATGATAAACCACCAGCAGCCGGGTCACGGACTGGGGTCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGAGGGATGATAAACCACCAGCAGCCGGGTCACGGACTGGGGTCG  1037

seq1  GCGGCCGGCGGAGGCAGCTATGTTCTGAGTCAGTCAGTCGTCGCTGAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCGGCGGAGGCAGCTATGTTCTGAGTCAGTCAGTCGTCGCTGAAAT  1087

seq1  CCCCATTCTTCTGAGAGAATTC  1121
      ||||||||||||||||||||||
seq2  CCCCATTCTTCTGAGAGAATTC  1109

seq1: chr16_91913213_91914115
seq2: B6Ng01-152L10.g_70_974

seq1  GAATTCAAGATAGAATAGGTAGTGTGGAGAAACGCTAAGAAAATCCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATAGAATAGGTAGTGTGGAGAAACGCTAAGAAAATCCATTA  50

seq1  CTGGTTTGAGGGAAAGACCTTTGGGAACCCGTGAGCCCCACATGTGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGAGGGAAAGACCTTTGGGAACCCGTGAGCCCCACATGTGGGGT  100

seq1  GGGAAAATGGGCGATGCTCCTGGGCATACAACAACCTCTTAGTCATAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGGGCGATGCTCCTGGGCATACAACAACCTCTTAGTCATAGGA  150

seq1  ACACACGCACTTTTTGCGAGAATCAGGAGTGTATGACCATAGGCCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCACTTTTTGCGAGAATCAGGAGTGTATGACCATAGGCCAGGCT  200

seq1  TTTTTGTCTGAGTTCTTTGGGTTTTCTCTCCCTTAAATGCTAAAAGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGAGTTCTTTGGGTTTTCTCTCCCTTAAATGCTAAAAGATAG  250

seq1  GCTGGTTATCTAGATAACTTGATTTGCTAGTGAGAAGTGCAGGCTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTATCTAGATAACTTGATTTGCTAGTGAGAAGTGCAGGCTGTTTT  300

seq1  GGTCCCTCGTTTGCATCTCCAGTCTGTGGTCATGGCCTGGCCTTTGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCGTTTGCATCTCCAGTCTGTGGTCATGGCCTGGCCTTTGCATG  350

seq1  TCTCAGGCTCCTGGGCTCAGGCTTTCCTGTGTTGGGTGGCCTGGCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCTCCTGGGCTCAGGCTTTCCTGTGTTGGGTGGCCTGGCCTTTG  400

seq1  CATGTCTCAGGCTCCTGGGCTCAGGCTCTCCTGTGTTGGGTGGTGTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCAGGCTCCTGGGCTCAGGCTCTCCTGTGTTGGGTGGTGTTCCT  450

seq1  TTTTATGGTAGGTTCTCAGATTTTAACTAGGTTTCTAGAAGTACTTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTAGGTTCTCAGATTTTAACTAGGTTTCTAGAAGTACTTTGTA  500

seq1  AATGGTAGTGTCTCGGTGACAGAATAGCCACTCTGCTGAAATCTGAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGTGTCTCGGTGACAGAATAGCCACTCTGCTGAAATCTGAATGC  550

seq1  TCCATGTGACCCCAGAAGGTCCCTCTCCGTGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGACCCCAGAAGGTCCCTCTCCGTGTGTGTGTGTGTGTGTGTGT  600

seq1  GTGTGTTTCAAGTGATTTCTCAAAACGTGTAT-GGGGCAAAGGACAACAG  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGTGTTTCAAGTGATTTCTCAAAACGTGTATGGGGGCAAAGGACAACAG  650

seq1  TTTACATTTCATACTTCCAAGAAGCACTTAGAGTTTATTTATTGAAGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCATACTTCCAAGAAGCACTTAGAGTTTATTTATTGAAGATA  700

seq1  GTGTTGACTTTTGTATCAAGAACAACAGACACACCTATTTTTTGAAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGACTTTTGTATCAAGAACAACAGACACACCTATTTTTTGAAACAA  750

seq1  GCCAATAAACTCTTCAGGTAGCAGCTTTCAGCTGAACATGAGGTAGACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAAACTCTTCAGGTAGCAGCTTTCAGCTGAACATGAGGTAGACTT  800

seq1  TAACTTCGAGCATGCGTTGGCTTACCAC-TTTCCCAGCAGAAAACACTAT  848
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TAACTTCGAGCATGCG-TGGCTTACCACTTTTCCCAGCAGAAAACACTAT  849

seq1  CAAAACACTACACATTCATGTTTC-TGTTGTTGTTAAGAAACTGTTTTAA  897
      ||||||||||||| |||||||||| |||  ||||||||||||||||||||
seq2  CAAAACACTACACTTTCATGTTTCTTGTGTTTGTTAAGAAACTGTTTTAA  899

seq1  ATGATA  903
      ||||||
seq2  ATGATA  905