BAC Information

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BAC

Clone NameB6Ng01-153B23
Chromosome16 (Build37)13 (Build37)
Map Location 3,121,738 - 3,122,788100,560,892 - 100,561,106
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042177
Downstream geneLOC100042915, LOC100042188, LOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153B23.bB6Ng01-153B23.g
ACCDH948522DH948523
length1,043327
definitionDH948522|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B23, 5' end.DH948523|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,121,738 - 3,122,788)(100,560,892 - 100,561,106)
sequence
gaattcaactcaggacctctgaaagagcagtcagtgctcttaactgttga
gtcatgtctttaaaaactcatgccttaaaaattgcagggagattctgtct
taaaagaaaaaaagtaaaaggcgtgtagcatactgactaaaattctttag
cagtacacatagttgtactttcctctttttcttttcttttcttattttta
aattcttttttattttgcaagacatgggtttctctgtatagccctgcctg
gctatcctggaactcactctatagaccaggctggcctcgaacccagaaat
ccacctgcctctgactcccaagtgctgggattaaaggtgtgtgccaccat
cgcctggtatagttgtactttttattttagtatttaaaagatttattgca
cgtacagcattctgcctgcatgcaggcctgcaggccagaagagggcacca
gatctcattgtaaatgatcgtgagccaccatggtacctgggaattgaacc
tctagaacaactgccagtactcttaaccacagaaccgaccgctactccag
gactattactgctgttcaaatctccctagcgtctctggtttattttctca
tgaatgttattttggcatgacaaagtttgatcttacacttcaatcagaca
catatctgcaatgacatgttcagtttgggtgtcaattactgaaaattgta
tttggtaatcaaacatttgtctctgtttgtatttagcctggaactatgta
tgtaaactaggatattctcctccctgatatctacctacttctgccctcct
acctgagttcttgaactaacagtgggccaccaccatgacaccacaaacaa
ctaagtgcttaccagggaattttataaactatgctattagcttagatgac
tcacgacatctggcgtgattttagctgggtatttcgaggcattgtctatt
ggactagatggaagtcactggcctgagttgtctaatggccgttcagtgcc
ttgggttgcctagcatttccatgagtcttgaaagacctttgga
ccctatccctaatccagattggtggaataacttggtatagatgtttgtgc
attaaaaaccctgtaggatcttcactctaggtcactgttcagcactggaa
cctgaattgtggccctgagtgataggtcctgggacatatgcagttctgca
cagacagacagacagacagacagacagacagacagacagacgtacaaaca
aacacgtgagcgtgtgcaacacacacacaaacaccactcctggccataat
tattgaggacgtgattttattattctgtgtttgtgagtctgtctgtctgt
ctgtctgtctgtctgtctatcaaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_3121738_3122788
seq2: B6Ng01-153B23.b_47_1089

seq1  GAATTCAACTCAGGACCTCTGAAAGAGCAGTCAGTGCTCTTAACTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCAGGACCTCTGAAAGAGCAGTCAGTGCTCTTAACTGTTGA  50

seq1  GTCATGTCTTTAAAAACTCATGTCTTAAAAAAACTCAGGGAGATTCTGTC  100
      |||||||||||||||||||||| ||| |||||   |||||||||||||||
seq2  GTCATGTCTTTAAAAACTCATGCCTT-AAAAATTGCAGGGAGATTCTGTC  99

seq1  TTAA---AAAAAAAGTAAAAGGC---TACACATACTGACTAAAATTCTTT  144
      ||||   ||||||||||||||||   ||  ||||||||||||||||||||
seq2  TTAAAAGAAAAAAAGTAAAAGGCGTGTA-GCATACTGACTAAAATTCTTT  148

seq1  AGCAGTACACATAGTTGTACTTTCCTCTTTTTCTTTTCTTTTATTTTTTT  194
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  AGCAGTACACATAGTTGTACTTTCCTCTTTTTCTTTTCTTTTCTTATTTT  198

seq1  AAAATTCTTTTTTATTTTTATTTTTTATTTTTCGAGACATGGGTTTCTCT  244
       ||||||             ||||||||||| | ||||||||||||||||
seq2  TAAATTC-------------TTTTTTATTTTGCAAGACATGGGTTTCTCT  235

seq1  GTATAGCCCTGCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGC  294
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTATAGCCCTGCCTGGCTATCCTGGAACTCACTCTATAGACCAGGCTGGC  285

seq1  CTCGAACCCAGAAATCCACCTGCCTTTGACTCCCAAGTGCTGGGATTAAA  344
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCGAACCCAGAAATCCACCTGCCTCTGACTCCCAAGTGCTGGGATTAAA  335

seq1  GGCGTGTGCCACCACCGCCTGGTGTAGTTGTACTTTTTATTTTAGTTTTT  394
      || ||||||||||| |||||||| |||||||||||||||||||||| |||
seq2  GGTGTGTGCCACCATCGCCTGGTATAGTTGTACTTTTTATTTTAGTATTT  385

seq1  AAAAGATTTATTACACGTACAGCATTCTGCCTGCATGCAGGCTTGCAGGC  444
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  AAAAGATTTATTGCACGTACAGCATTCTGCCTGCATGCAGGCCTGCAGGC  435

seq1  CAGAAGAGGGCACCAGATCTCATTGTAGATGATTGTTAGCCACCATGGTA  494
      ||||||||||||||||||||||||||| ||||| || |||||||||||||
seq2  CAGAAGAGGGCACCAGATCTCATTGTAAATGATCGTGAGCCACCATGGTA  485

seq1  CCTGGGAATTGAACTCATGACCTCTAGAACAACTGCCAGTACTCTTAATC  544
      ||||||||||||       ||||||||||||||||||||||||||||| |
seq2  CCTGGGAATTGA-------ACCTCTAGAACAACTGCCAGTACTCTTAACC  528

seq1  ATAGA----ACCATTTCTCCAGGACTATTACTGCTGTTCTAATCTCCCTA  590
      | |||    |||  | ||||||||||||||||||||||| ||||||||||
seq2  ACAGAACCGACCGCTACTCCAGGACTATTACTGCTGTTCAAATCTCCCTA  578

seq1  GCGTCTCAGGTTTATTTTCTCATGAATGTTATTTTGGCATGATAAAGTTT  640
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  GCGTCTCTGGTTTATTTTCTCATGAATGTTATTTTGGCATGACAAAGTTT  628

seq1  GATCTTACACTTCAATCAGACACACATCGGCAATGACATGTTCAATTTGA  690
      |||||||||||||||||||||||| ||| ||||||||||||||| |||| 
seq2  GATCTTACACTTCAATCAGACACATATCTGCAATGACATGTTCAGTTTGG  678

seq1  GTGTCAATTACTGAAAATTGTATTTGGTAATCAAACATTTGTCTCTGTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATTACTGAAAATTGTATTTGGTAATCAAACATTTGTCTCTGTTT  728

seq1  GTATTTAGCCTGGAACTATGTATGTAAGCTAGGATGTTCTTCTCCCTGAT  790
      ||||||||||||||||||||||||||| ||||||| |||| |||||||||
seq2  GTATTTAGCCTGGAACTATGTATGTAAACTAGGATATTCTCCTCCCTGAT  778

seq1  ATCTACCTACTTCTGCCCTCCTACCTGAGTTCTTG----AACAGTGGGCC  836
      |||||||||||||||||||||||||||||||||||    |||||||||||
seq2  ATCTACCTACTTCTGCCCTCCTACCTGAGTTCTTGAACTAACAGTGGGCC  828

seq1  ACCACCATGACAGGACAAACAACTAAGTGCTTACCAGGGAATTTTATAAA  886
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  ACCACCATGACACCACAAACAACTAAGTGCTTACCAGGGAATTTTATAAA  878

seq1  CTATGCTATTAGCTTAGATGATTCATGACATCTGACATGAATTTTAGCTG  936
      ||||||||||||||||||||| ||| |||||||| | || ||||||||||
seq2  CTATGCTATTAGCTTAGATGACTCACGACATCTGGCGTG-ATTTTAGCTG  927

seq1  GGTATTTTGAGGCATTATTCTATTGGACTAGATGGAAGTCACTGGCCTGA  986
      ||||||| ||||||||  ||||||||||||||||||||||||||||||||
seq2  GGTATTTCGAGGCATT-GTCTATTGGACTAGATGGAAGTCACTGGCCTGA  976

seq1  GTTGTCTAATGG-CGTTCAGTGCCTTGGGTTGCCTAGCAGTTTCATGAGT  1035
      |||||||||||| |||||||||||||||||||||||||| || |||||||
seq2  GTTGTCTAATGGCCGTTCAGTGCCTTGGGTTGCCTAGCATTTCCATGAGT  1026

seq1  C-TGAAAGTCCTTTGGA  1051
      | |||||| ||||||||
seq2  CTTGAAAGACCTTTGGA  1043

seq1: chr13_100560892_100561106
seq2: B6Ng01-153B23.g_191_400 (reverse)

seq1  TGGTTTGATAGACAGACAGACACACATAC--ACACACACACTCACAAACA  48
      |||||||||||||||||||||| ||| ||  ||| ||| |||||||||||
seq2  TGGTTTGATAGACAGACAGACAGACAGACAGACAGACAGACTCACAAACA  50

seq1  CACAATAATAAAATCACGTCCTCAATAATTATGGCCAGCAGTGGTGTGTG  98
      || ||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  CAGAATAATAAAATCACGTCCTCAATAATTATGGCCAGGAGTGGTGTTTG  100

seq1  TGTGTGTG-TGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGCGCATGC  147
      |||||||| ||     |     |||| ||| |||| || |||       |
seq2  TGTGTGTGTTGCACACGCTCACGTGTTTGTTTGTACGTCTGT-------C  143

seq1  TCACGTGTTTGTGCGTCTGTCTGTCTGTCTGTCTGTGCAGAACTGCATAT  197
      |  | ||| |||  ||||||||||||||||||||||||||||||||||||
seq2  TGTC-TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGCAGAACTGCATAT  192

seq1  GTCCCAGGACCTATCACT  215
      ||||||||||||||||||
seq2  GTCCCAGGACCTATCACT  210