BAC Information

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BAC

Clone NameB6Ng01-153N19
Chromosome16 (Build37)
Map Location 48,852,504 - 48,853,565
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla
Downstream geneRetnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153N19.bB6Ng01-153N19.g
ACCDH949056DH949057
length1,2601,067
definitionDH949056|Mus musculus domesticus DNA, BAC clone: B6Ng01-153N19, 5' end.DH949057|Mus musculus domesticus DNA, BAC clone: B6Ng01-153N19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagcatcttatataattataaaaaaaagccaaaggagacatctc
tacacactcccacttaaacagacataatctagagcactgtgaaattccag
tactgaagaggacttggagcaacatgaactctggtttatcactggtagac
aaaaatggtcagccacgttcaagagtttggtgaattttttaaaaccaact
tactcttcttatattgtccaagtatcttattttttgttccaaggatttta
agacgcacaaagagacaaaactctgcacatggatatttatggcaacttta
ttcataattgcccattcgagtgcaagcaacacatcctttattgggtaagt
ggaggaatgggtgtatccagacagtgggatatcattcaatgtcaaaaaga
actgagctatcctgcacagaaagcaagcattcagcatagtgaggagacag
cctacatggtgggagaaatatttgccaaatatatatctgacaggggatcc
aatcaataaatgggcaagtgaagagaacatatgcttttcagaataactac
aaatagaattacattgtgaagggatttttcactatccctaacattcatgg
aaatacaaagtaaagcaatattgagattccatcccactccagtcagagtg
gctgccatcagggaaacaaatgctaacaaatgctagtcaggaggtgggaa
aagaggaacacttgcattgcagccggcatgcacaccagagcagccactac
ggcaaccgagatggagctctctcagagagctagaagtgaatctactgtga
gattcttttatgccactctgctgaatccaagacagaatctaagtaagcat
tccgcagagacacctgcacaccattgctgactgcaactctagtcataaaa
agcaagatatggatccatctcagacattccactaacagatgaatgagtaa
gaaaaatgcccaaaaccatatgatctcatccaaaccctatccccacccta
tctctatccatcccaatccatcccaacctcctctgctcctctctactcga
tcaactacaatcatcaactaacatcatcaatcaacaacagcaaggttttc
tgaaaagacaagttatttcacaaagagtgaccggagttagtatgaatatc
agccgagaaagacacacatcacatctcttatctggaatcgatctcttacc
tatgttaccgaatataagaccccacttggcccacgtcaagtgctaaagga
cgatgatatg
gaattcctattgtatgattgaaaagtgtgagatggtgggctatgcacaga
tagcctggaaccctggtggttggtgatttccacctgcccttaggttttaa
ggacagcatttcaggttgttgttgttgttgttgttgttgttgtttatctg
ttaggtgttgccaattctgatgaagcatagatattctgagatttggctgg
gaaggatggacagaagttcttaaaggaaaagaaatgatgtctgaaagatt
aatgaaaaaggaagggaatgaaactaagtcttgagtccttcatgtattcc
cttaagaaacaaagacaggaagaaaagatatgagtatgtaagttgtcatg
caacctaataacataattctcaacctagggacaatttgtgatgtttttcg
gtgtcagtttagtttcttgtccatgatctcaaatgaggagcaaggctgag
aaaagggtatataagtaagattttatcgggaagtagaataaaaactccac
taaacaagaaggaatattaaaaagtgggtttccggacctgggtttcattt
atatcttggccaattggtcctgactctaaacaagtaaggtattcagttgg
caagggacctgatttgttaatttgaatgtatatgaaagagtttgattagt
caagaaagtggaatagaagggcatagatgcagaaaagatcctgccaaaga
aatagtcggagaaaaaaatcttgtcaaaggctccaagaagtacataaaca
acaataacaacaacaccccaaacaaacaacccaaaaaaaacctaccaacc
ccaacaccaccaacaaaaatggtaagtaatatagcaaaggctggtatttt
tctttggatgatatcttggtgagtttaaaatttaaactgttccatgttta
gtccatacaacagtgtttagcaacttctctcttcaagccatcatcaatat
cagtatacaatatttacactttactcaagtacaagtttattgtttaaaaa
ggaaaaaaattgtcagcatcctaatactgatatgggacattgatcttaac
cacatacaaacaaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48852504_48853565
seq2: B6Ng01-153N19.g_70_1136 (reverse)

seq1  TCATTTG-TTGTTAGTGTTT--GATCAATGT-CCATATTCACTATTAAGA  46
      ||||||| ||||  ||| ||  ||||||||| ||||| ||| ||||| ||
seq2  TCATTTGTTTGTATGTGGTTAAGATCAATGTCCCATA-TCAGTATTAGGA  49

seq1  TGCTGAC-ATTTTTTTCCCTTTTTAACAATAACTCTGTACTTG-GT-AAG  93
      ||||||| |||||||||| |||| ||||||||   |||||||| || |||
seq2  TGCTGACAATTTTTTTCCTTTTTAAACAATAAACTTGTACTTGAGTAAAG  99

seq1  TGTAAATATTGTATACTGAAATTGATTGATGGCTTGAAGAGAGAAGTTGC  143
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TGTAAATATTGTATACTGATATTGA-TGATGGCTTGAAGAGAGAAGTTGC  148

seq1  TAAAACACTGTTGTATGGACTAAACATGGAACAGTTTAAATTTTAAACTC  193
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAACACTGTTGTATGGACTAAACATGGAACAGTTTAAATTTTAAACTC  197

seq1  ACCAAGATATCATCCAAAG-AAAATACCAGCCTTTGCTATATTTACTTAC  242
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  ACCAAGATATCATCCAAAGAAAAATACCAGCCTTTGCTATA-TTACTTAC  246

seq1  CATTTTTGTTGGTGGTGTTGGGGTTGGTAGGTTTTTTTTGGGTTGTTTGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTTGGTGGTGTTGGGGTTGGTAGGTTTTTTTTGGGTTGTTTGT  296

seq1  TTGGGGTGTTGTTGTTATTGTTGTTTATGTACTTCTTGGAGCCTTTGACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGTTGTTGTTATTGTTGTTTATGTACTTCTTGGAGCCTTTGACA  346

seq1  AGATTTTTTTCTCCGACTATTTCTTTGGCAGGATCTTTTCTGCATCTATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTCTCCGACTATTTCTTTGGCAGGATCTTTTCTGCATCTATG  396

seq1  CCCTTCTATTCCAC-TTCTTGACTAATCAAACTCTTTCATATACATTCAA  441
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTTCTATTCCACTTTCTTGACTAATCAAACTCTTTCATATACATTCAA  446

seq1  ATTAACAAATCAGGTCCCTTGCCAACTGAATACCTTACTTGTTTAGAGTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAATCAGGTCCCTTGCCAACTGAATACCTTACTTGTTTAGAGTC  496

seq1  AGGACCAATTGGCCAAGATATAAATGAAACCCAGGTCCGGAAACCCACTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAATTGGCCAAGATATAAATGAAACCCAGGTCCGGAAACCCACTT  546

seq1  TTTAATATTCCTTCTTGTTTAGTGGAGTTTTTATTCTACTTCCCGATAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTCCTTCTTGTTTAGTGGAGTTTTTATTCTACTTCCCGATAAA  596

seq1  ATCTTACTTATATACCCTTTTCTCAGCCTTGCTCCTCATTTGAGATCATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTTATATACCCTTTTCTCAGCCTTGCTCCTCATTTGAGATCATG  646

seq1  GACAAGAAACTAAACTGACACCGAAAAACATCACAAATTGTCCCTAGGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAACTAAACTGACACCGAAAAACATCACAAATTGTCCCTAGGTT  696

seq1  GAGAATTATGTTATTAGGTTGCATGACAACTTACATACTCATATCTTTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTATGTTATTAGGTTGCATGACAACTTACATACTCATATCTTTTC  746

seq1  TTCCTGTCTTTGTTTCTTAAGGGAATACATGAAGGACTCAAGACTTAGTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTTTGTTTCTTAAGGGAATACATGAAGGACTCAAGACTTAGTT  796

seq1  TCATTCCCTTCCTTTTTCATTAATCTTTCAGACATCATTTCTTTTCCTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCTTCCTTTTTCATTAATCTTTCAGACATCATTTCTTTTCCTTT  846

seq1  AAGAACTTCTGTCCATCCTTCCCAGCCAAATCTCAGAATATCTATGCTTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCTGTCCATCCTTCCCAGCCAAATCTCAGAATATCTATGCTTC  896

seq1  ATCAGAATTGGCAACACCTAACAGATAAACAACAACAACAACAACAACAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATTGGCAACACCTAACAGATAAACAACAACAACAACAACAACAA  946

seq1  CAACAACCTGAAATGCTGTCCTTAAAACCTAAGGGCAGGTGGAAATCACC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCTGAAATGCTGTCCTTAAAACCTAAGGGCAGGTGGAAATCACC  996

seq1  AACCACCAGGGTTCCAGGCTATCTGTGCATAGCCCACCATCTCACACTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAGGGTTCCAGGCTATCTGTGCATAGCCCACCATCTCACACTTT  1046

seq1  TCAATCATACAATAGGAATTC  1062
      |||||||||||||||||||||
seq2  TCAATCATACAATAGGAATTC  1067