BAC Information

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BAC

Clone NameB6Ng01-154E21
Chromosome16 (Build37)
Map Location 84,646,549 - 84,827,165
singlet/doubletdoublet
Overlap geneLOC100039634, Mrpl39, Jam2
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893
Downstream geneAtp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000, Adamts1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154E21.bB6Ng01-154E21.g
ACCDH949386DH949387
length1,1741,115
definitionDH949386|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E21, 5' end.DH949387|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,825,977 - 84,827,165)(84,646,549 - 84,647,677)
sequence
gaattcatttcaatgagtattttttggaaggaaaagtcggtttaaaaatg
aataaattggggctggcgcaatggctgctcttccaaaggtcccaagttca
aatcccagcaaccacatggtggctcacaaccatctgtaacaagatctgat
gccctcttctggtgtgtctgaagacaactacagtgtacttacatataata
aataaataatttttttaaaaaatgaataaattgagataaaatcatgttcc
tgtaatcaaagcaaatgacgacaggaggattgagtgttcaaggccagcct
gggttacatattgaggctctgtttcaaaacaacagaaattgagcagcagt
agtcaaatatcacgggaacatgttaaatttttgtgagtctttaagagcat
ttctagatgccacattaaaagtagaaaattgatcatgaaaaagatagtaa
aaagtacctttagtcttcaatgcggcctttgccaacacactgctcattat
tctaaggcacttttttcagaaagtaaaaaagcatagtatgtttttttgtt
tgtttttatttcttcaaatttgaggaagtaaaataaaaccaaccaatgat
agttcaccataaatttctttaccagttattacagctaaaatgttccaaat
cttaactgaacaagaaacaagagatgaaaaatatttaagaattgtgtgga
taaggctggagagatgccttcatggttagcaatctgctcttccagaggac
ttgagtttgcttccagcacttagacggcagcttacaaccatctggggctc
catttccagggagtctgagttcctctcctgatgtctaggggtaccaggtt
cgcatgtagtacaaacacatggaggtaaaccacccatgcataaaatgaat
tgtgtggaaatggacactaattgctaaaagggaaaataatttttgtctat
ccttagttcatgtagtaataattcatagaccataaatgagttgtatcaga
ataaatgttttattatttcctaagtagatgtttatattgatatctttgtg
tttcaccaggtatgaccattcagaactcttaaatacctagggttatggag
gacctggtaaacatggtctttctcaggctcaggtggtagagatgtcgaac
atatacacctaccggtactgtaac
gaattcttcccaacgtttagtggtcgagctgagttgctaaattctacgtt
gcaacagtctatgtactttgcatgaaaaaaaaatacatcgttttattcac
catacaaaaagtccctttgaacacactctatttgggggtaattttctgac
tcaaagagtttgtcttatttccccagggatgctttaatcatttctctctt
ttacccactgaagacctcaaagaatccagttatgtgtcacaaatgcacat
atgcgccagatacattcagagcatacctttcctgctaaagaggtaggagc
agaagaatagagcttttgtaagcagaatgagagcttccccgcgtatttga
ggccaggttcttaagacaaagtttcacaacaactccttaatattcattaa
tggatcaatgtcttatgccaaaggattaagcctcagtaatttttttccct
tcatttcacagttcagccaaggggcactttttagagaaatagctgaaatc
tagaaaaacttagtggaaaatatatatttaaaataaaccaagttcagatc
tccatagctagtccaagccaggaaatacctagattagacacagtggtata
aagcaagatgtatacatgatttctatgtattcttgagttagaactctagc
tcacaatgtcctatagatcacccaggataggacaacaaacttctcctact
gcatttgtgtttattttcatttttcaatactgccttctctaactctccat
atttcaaacaactaaattattgcatcagaaaaattgtcagttactttact
agtttaaatgaaaatttttgtcagtgtgcagtcacagtttggtttctgtt
ccataataaaatgcctgagagtaggtaatgtataatgaaaggaaacttac
ttggctcacagatgtttagtgcttgagatgagctcagcctctatgcattt
ctataaaatgagcatgtagattccgggttctcctaatactaaattcctct
aatctttattggcctttctgtctcttcaaagtgaagaaaaaaaaatcaaa
gcctgattcagatggcgactaggccactccgcaggtcttgtctgaaaacg
tgctgaaacaacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_84825977_84827165
seq2: B6Ng01-154E21.b_46_1219 (reverse)

seq1  GTTACAGTACCGGTAGGTATGTATATGTCTGACATCTCTACCAACCTGAA  50
      |||||||||||||||||  |||||||||  |||||||||||| |||||  
seq2  GTTACAGTACCGGTAGG--TGTATATGTTCGACATCTCTACC-ACCTG--  45

seq1  ACCCTGAGAAAAGACCCATGTTGTACAGGTCTTCATAAACCCTAAGGTAT  100
      | |||||| ||||| |||||||   |||||| ||   |||||| ||||||
seq2  AGCCTGAG-AAAGA-CCATGTTTACCAGGTCCTCCATAACCCT-AGGTAT  92

seq1  TTAAGAGTATCTGAAAATGGTCAATACCT-GTGAAACACAAAGATATTAA  149
      |||||||| ||||  ||||||| |||||| |||||||||||||||| | |
seq2  TTAAGAGT-TCTG--AATGGTC-ATACCTGGTGAAACACAAAGATA-TCA  137

seq1  ATATAAACATCTACTTAGGAATTAATAAAACATTGTATTCTGATACAACT  199
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  ATATAAACATCTACTTAGGAAATAATAAAACATT-TATTCTGATACAACT  186

seq1  CATTTATGGTCTATGAATTATTACTACATGAACTAAGGATAGACAAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGGTCTATGAATTATTACTACATGAACTAAGGATAGACAAAAAT  236

seq1  TATTTTCCCTTTTAGCAATTAGTTGTCCATTTCCACACAATTCATTTTTA  299
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TATTTTCCCTTTTAGCAATTAG-TGTCCATTTCCACACAATTCA-TTTTA  284

seq1  TGCATGGGTGGTTTACCTCCATGTGTTTGTACTACATGCGAACCTGGTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGTGGTTTACCTCCATGTGTTTGTACTACATGCGAACCTGGTAC  334

seq1  CCCTAGACATCAGGAGAGGAACTCAGACTCCCTGGAAATGGAGCCCCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGACATCAGGAGAGGAACTCAGACTCCCTGGAAATGGAGCCCCAGA  384

seq1  TGGTTGTAAGCTGCCGTCTAAGTGCTGGAAGCAAACTCAAGTCCTCTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTAAGCTGCCGTCTAAGTGCTGGAAGCAAACTCAAGTCCTCTGGA  434

seq1  AGAGCAGATTGCTAACCATGAAGGCATCTCTCCAGCCTTATCCACACAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGATTGCTAACCATGAAGGCATCTCTCCAGCCTTATCCACACAAT  484

seq1  TCTTAAATATTTTTCATCTCTTGTTTCTTGTTCAGTTAAGATTTGGAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATATTTTTCATCTCTTGTTTCTTGTTCAGTTAAGATTTGGAACA  534

seq1  TTTTAGCTGTAATAACTGGTAAAGAAATTTATGGTGAACTATCATTGGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTGTAATAACTGGTAAAGAAATTTATGGTGAACTATCATTGGTT  584

seq1  GGTTTTATTTTACTTCCTCAAATTTGAAGAAATAAAAACAAACAAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTTACTTCCTCAAATTTGAAGAAATAAAAACAAACAAAAAAA  634

seq1  CATACTATGCTTTTTTACTTTCTGAAAAAAGTGCCTTAGAATAATGAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTATGCTTTTTTACTTTCTGAAAAAAGTGCCTTAGAATAATGAGCA  684

seq1  GTGTGTTGGCAAAGGCCGCATTGAAGACTAAAGGTACTTTTTACTATCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGGCAAAGGCCGCATTGAAGACTAAAGGTACTTTTTACTATCTT  734

seq1  TTTCATGATCAATTTTCTACTTTTAATGTGGCATCTAGAAATGCTCTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATCAATTTTCTACTTTTAATGTGGCATCTAGAAATGCTCTTAA  784

seq1  AGACTCACAAAAATTTAACATGTTCCCGTGATATTTGACTACTGCTGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACAAAAATTTAACATGTTCCCGTGATATTTGACTACTGCTGCTC  834

seq1  AATTTCTGTTGTTTTGAAACAGAGCCTCAATATGTAACCCAGGCTGGCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTTGTTTTGAAACAGAGCCTCAATATGTAACCCAGGCTGGCCT  884

seq1  TGAACACTCAATCCTCCTGTCGTCATTTGCTTTGATTACAGGAACATGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTCAATCCTCCTGTCGTCATTTGCTTTGATTACAGGAACATGAT  934

seq1  TTTATCTCAATTTATTCATTTTTTAAAAAAATTATTTATTTATTATATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCAATTTATTCATTTTTTAAAAAAATTATTTATTTATTATATGT  984

seq1  AAGTACACTGTAGTTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTGTAGTTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTT  1034

seq1  GTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGG  1084

seq1  ACCTTTGGAAGAGCAGCCATTGCGCCAGCCCCAATTTATTCATTTTTAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGAAGAGCAGCCATTGCGCCAGCCCCAATTTATTCATTTTTAAA  1134

seq1  CCGACTTTTCCTTCCAAAAAATACTCATTGAAATGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTTTTCCTTCCAAAAAATACTCATTGAAATGAATTC  1174

seq1: chr16_84646549_84647677
seq2: B6Ng01-154E21.g_66_1180

seq1  GAATTCTTCCCAACGTTTAGTGGTCGAGCTGAGTTGCTAAATTCTACGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCAACGTTTAGTGGTCGAGCTGAGTTGCTAAATTCTACGTT  50

seq1  GCAACAGTCTATGTACTTTGCATGAAAAAAAAATACATCGTTTTATTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGTCTATGTACTTTGCATGAAAAAAAAATACATCGTTTTATTCAC  100

seq1  CATACAAAAAGTCCCTTTGAACACACTCTATTTGGGGGTAATTTTCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAAAGTCCCTTTGAACACACTCTATTTGGGGGTAATTTTCTGAC  150

seq1  TCAAAGAGTTTGTCTTATTTCCCCAGGGATGCTTTAATCATTTCTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGTTTGTCTTATTTCCCCAGGGATGCTTTAATCATTTCTCTCTT  200

seq1  TTACCCACTGAAGACCTCAAAGAATCCAGTTATGTGTCACAAATGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTGAAGACCTCAAAGAATCCAGTTATGTGTCACAAATGCACAT  250

seq1  ATGCGCCAGATACATTCAGAGCATACCTTTCCTGCTAAAGAGGTAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCAGATACATTCAGAGCATACCTTTCCTGCTAAAGAGGTAGGAGC  300

seq1  AGAAGAATAGAGCTTTTGTAAGCAGAATGAGAGCTTCCCCGCGTATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATAGAGCTTTTGTAAGCAGAATGAGAGCTTCCCCGCGTATTTGA  350

seq1  GGCCAGGTTCTTAAGACAAAGTTTCACAACAACTCCTTAATATTCATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTCTTAAGACAAAGTTTCACAACAACTCCTTAATATTCATTAA  400

seq1  TGGATCAATGTCTTATGCCAAAGGATTAAGCCTCAGTAATTTTTTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAATGTCTTATGCCAAAGGATTAAGCCTCAGTAATTTTTTTCCCT  450

seq1  TCATTTCACAGTTCAGCCAAGGGGCACTTTTTAGAGAAATAGCTGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACAGTTCAGCCAAGGGGCACTTTTTAGAGAAATAGCTGAAATC  500

seq1  TAGAAAAACTTAGTGGAAAATATATATTTAAAATAAACCAAGTTCAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAACTTAGTGGAAAATATATATTTAAAATAAACCAAGTTCAGATC  550

seq1  TCCATAGCTAGTCCAAGCCAGGAAATACCTAGATTAGACACAGTGGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGCTAGTCCAAGCCAGGAAATACCTAGATTAGACACAGTGGTATA  600

seq1  AAGCAAGATGTATACATGATTTCTATGTATTCTTGAGTTAGAACTCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGATGTATACATGATTTCTATGTATTCTTGAGTTAGAACTCTAGC  650

seq1  TCACAATGTCCTATAGATCACCCAGGATAGGACAACAAACTTCTCCTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGTCCTATAGATCACCCAGGATAGGACAACAAACTTCTCCTACT  700

seq1  GCATTTGTGTTTATTTTCATTTTTCAATACTGCCTTCTCTAACTCTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTGTTTATTTTCATTTTTCAATACTGCCTTCTCTAACTCTCCAT  750

seq1  ATTTCAAACAACTAAATTATTGCATCAGAAAAATTGTCAGTTACTTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACAACTAAATTATTGCATCAGAAAAATTGTCAGTTACTTTACT  800

seq1  AGTTTAAATGAAAATTTTTGTCAGTGTGCAGTCACAGTTTGGTTTCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAATGAAAATTTTTGTCAGTGTGCAGTCACAGTTTGGTTTCTGTT  850

seq1  CCATAATAAAATGCCTGAGAGTAGGTAATGTATAATGAAAGGAAACTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAAAATGCCTGAGAGTAGGTAATGTATAATGAAAGGAAACTTAC  900

seq1  TTGGCTCACAGATGTTTAGTGCTTGAGATGAGCTCAGCCTCTATGCATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCACAGATGTTTAGTGCTTGAGATGAGCTCAGCCTCTATGCATTT  950

seq1  CTATAAAATGAGCATGTTAGATTCCGGGTTTCTCTAAATACTAAATTCCT  1000
      |||||||||||||||| ||||||||||| |||||  ||||||||||||||
seq2  CTATAAAATGAGCATG-TAGATTCCGGG-TTCTCCTAATACTAAATTCCT  998

seq1  CTTAAATCTTTATTGGCCTTTCTGTCTTCTCAAAGGTGAAAGAAAAAAAA  1050
      ||  |||||||||||||||||||||||  ||||| ||| |||||||||||
seq2  CT--AATCTTTATTGGCCTTTCTGTCTCTTCAAA-GTG-AAGAAAAAAAA  1044

seq1  ATCAGAGCCCTGATTCAAGATGGCAGACTAGGCCACCCGGCAGGTCTTGT  1100
      |||| || |||||||| ||||||| ||||||||||| | |||||||||||
seq2  ATCAAAG-CCTGATTC-AGATGGC-GACTAGGCCACTCCGCAGGTCTTGT  1091

seq1  CTGAGATACCGGTGCTGAAAACCAACGCT  1129
      |||| | ||  |||||||||  |||||||
seq2  CTGA-AAAC--GTGCTGAAA--CAACGCT  1115