BAC Information

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BAC

Clone NameB6Ng01-154F11
Chromosome16 (Build37)
Map Location 75,668,740 - 75,822,756
singlet/doubletdoublet
Overlap geneStch, LOC546667
Upstream geneLOC665042, D930038D03Rik, Rbm11
Downstream geneSamsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F11.bB6Ng01-154F11.g
ACCDH949412DH949413
length8601,080
definitionDH949412|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F11, 5' end.DH949413|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,668,740 - 75,669,425)(75,821,667 - 75,822,756)
sequence
gaattctattagtcagcacttgtgttcctatgatacagtatgtgaaacaa
acaacgtaagagaaggacaagtttgctcagatcaccctttcagaagcttc
agttctagtcttggcccatcagagctgagggtactgtgacaatttgaatc
tgtgtcagcattgtgacaatgtgaacatgtggcagagacttttttttttt
ttggtagtagtagagtgggggtattttctttgtttacatttcaaatttta
tcccctttcccaatattccctctggaatccccctatcccatcccatcccc
cctgcttctatgagggtggccccacagccacctacccacccactcctacc
tccctgccctggcattcccctacagtagagtcttttttttttatgtattt
tcctcaattacatttccaatgctatcccaaaagtcccccataccctcccc
cccacttccctccccacccattcccatttttttggccctggcgttcccct
gtactggggcatataaagtttgtgtgtccaatgggcctctctttccagtg
atggccaactaggccatcttttgatacctatgcagctaaagtcaagagct
ccggggtactgcttagttcataatgttgttccacctatagggttgcagat
ccctttagctccttgggtacttttctctagctcctccattgggagccctg
tgatccatccaatagctgactgtgagcatccactttctgtgtttgctagg
cccctggcatagttctcacaagagacagctacttctgggttcttttcagc
aaaatcttgctagtgtgtgcaatggtgtcagcgtttggaaactgattatg
gggtggatcc
gaattcttcacgtctaatacttcagaatgtagctttatctagaattaggg
cctgtaaataaaacagtaaaataagtgcagctgggtgcagccagattggg
aagaaaaaaatgggaacacaggtaaggtaggaagaccatggatgggtcag
agaaagcatccatctataaactgtgctatgatcccttatatttagcctgt
agaactgtaagaatacatttctgttacttggggcgggggcgggggggggg
acttagtctgtattaccttattgtaatagctcaggaaactgctaattata
taactgcaaattataaattatcatctgagttacatttgatgagctatatc
tttaaattattataggcacctttcccccctcatagctgaaggaagaaaag
ttttgttacaaatctctagaaagacacagtagttccagatgtgtagaaat
ataatctatgttactgttctaaaggaaatgtagcctttttagggctaggc
tgaaatcacattgaaaccaagtttgaaaacctgtctcatttctgcgtttg
gcaagcatatacttttgaatacagaagaatctgtgattgcaaaggaatag
taaaagtgaactatagcagtttcataaatgttcatgtagctacaaaatag
agacagacagacagaccagtagcctagaaatgcctaaaaactttgacaat
aggcaatatctctctgtgatctttgagcctaatttgaaacaatgagaatt
cttcctccccagtgaaagacaaagaggactctatacagaaactaagcact
atactttatatggaatgaagggaaagtgaaactctatcttccatagaaag
agagactcccgttttgttcagttatatagtactcatctgagtgattatga
aatgtatatacccttcacattcattcattaatagctatgatatttgtatg
gagatctttttaaataccttcatagttttttttttatcttccaagtgtcc
aaattatggtatatgaaacctgtcgatcatagacattaaatggatggggg
aggtatacatctaatctattacttttgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75668740_75669425
seq2: B6Ng01-154F11.b_46_732

seq1  GAATTCTATTAGTCAGCACTTGTGTTCCTATGATACAGTATGTGAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAGTCAGCACTTGTGTTCCTATGATACAGTATGTGAAACAA  50

seq1  ACAACGTAAGAGAAGGACAAGTTTGCTCAGATCACCCTTTCAGAAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTAAGAGAAGGACAAGTTTGCTCAGATCACCCTTTCAGAAGCTTC  100

seq1  AGTTCTAGTCTTGGCCCATCAGAGCTGAGGGTACTGTGACAATTTGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGTCTTGGCCCATCAGAGCTGAGGGTACTGTGACAATTTGAATC  150

seq1  TGTGTCAGCATTGTGACAATGTGAACATGTGGCAGAGACTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGCATTGTGACAATGTGAACATGTGGCAGAGACTTTTTTTTTTT  200

seq1  TTGGTAGTAGTAGAGTGGGGGTATTTTCTTTGTTTACATTTCAAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGTAGTAGAGTGGGGGTATTTTCTTTGTTTACATTTCAAATTTTA  250

seq1  TCCCCTTTCCCAATATTCCCTCTGGAATCCCCCTATCCCATCCCATCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTCCCAATATTCCCTCTGGAATCCCCCTATCCCATCCCATCCCC  300

seq1  CCTGCTTCTATGAGGGTGGCCCCACAGCCACCTACCCACCCACTCCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTATGAGGGTGGCCCCACAGCCACCTACCCACCCACTCCTACC  350

seq1  TCCCTGCCCTGGCATTCCCCTACAGTAGAGTCTTTTTTTTTTATGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCCTGGCATTCCCCTACAGTAGAGTCTTTTTTTTTTATGTATTT  400

seq1  TCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCC  450

seq1  CCCACTTCCCTCCCCACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCCCTCCCCACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCT  500

seq1  GTACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTG  550

seq1  ATGGCCAACTAGGCCATCTTTTGATACCTATGCAGCTAAAGTCAAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAACTAGGCCATCTTTTGATACCTATGCAGCTAAAGTCAAGAGCT  600

seq1  CCGGGGTACTGCTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGTACTGCTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGAT  650

seq1  CCCTTTAGCTCCTTGGGTAC-TTTCTCTAGCTCCTCC  686
      |||||||||||||||||||| ||||||||||||||||
seq2  CCCTTTAGCTCCTTGGGTACTTTTCTCTAGCTCCTCC  687

seq1: chr16_75821667_75822756
seq2: B6Ng01-154F11.g_64_1143 (reverse)

seq1  TGACCAAAGTAATATGATTAGAATGTATACCTCCCCCTTCATTTTAATGT  50
      |||| ||||||||| |||||| ||||||||||||||| ||  ||||||||
seq2  TGACAAAAGTAATA-GATTAG-ATGTATACCTCCCCCATCCATTTAATGT  48

seq1  CTATTAATCGGACAGGTTTCAATATACAATAATTTAGAACACTTGGAAGA  100
      ||| | ||| |||||||||| |||||| ||||||| | ||||||||||||
seq2  CTA-TGATC-GACAGGTTTC-ATATACCATAATTT-GGACACTTGGAAGA  94

seq1  TTAAAAAAAAAACTATGAAGGTTATTTTAAAAAGATCTCCATACAAATAT  150
       |||||||||||||||||||||   |||||||||||||||||||||||||
seq2  -TAAAAAAAAAACTATGAAGGT--ATTTAAAAAGATCTCCATACAAATAT  141

seq1  CATAGCTATTAATGAATGTATGTGAAGGGTATATACATTTCAATATTCAC  200
      |||||||||||||||||| |||||||||||||||||||||| ||| ||||
seq2  CATAGCTATTAATGAATGAATGTGAAGGGTATATACATTTC-ATAATCAC  190

seq1  TCAGATGAGTACTATATAACTGAAC-AAACGGGAGGTCTCTCTTTCTATG  249
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TCAGATGAGTACTATATAACTGAACAAAACGGGA-GTCTCTCTTTCTATG  239

seq1  GAAGATAGAGTTTCACTTTCCCTTCATTCCATATAAAGTATAGTGCTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGAGTTTCACTTTCCCTTCATTCCATATAAAGTATAGTGCTTAG  289

seq1  TTTCTGTATAGAGTCCTCTTTGTCTTTCACTGGGGAGGAAGAATTCTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATAGAGTCCTCTTTGTCTTTCACTGGGGAGGAAGAATTCTCAT  339

seq1  TGTTTCAAATTAGGCTCAAAGATCACAGAGAGATATTGCCTATTGTCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAATTAGGCTCAAAGATCACAGAGAGATATTGCCTATTGTCAAA  389

seq1  GTTTTTAGGCATTTCTAGGCTACTGGTCTGTCTGTCTGTCTCTATTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGGCATTTCTAGGCTACTGGTCTGTCTGTCTGTCTCTATTTTGT  439

seq1  AGCTACATGAACATTTATGAAACTGCTATAGTTCACTTTTACTATTCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATGAACATTTATGAAACTGCTATAGTTCACTTTTACTATTCCTT  489

seq1  TGCAATCACAGATTCTTCTGTATTCAAAAGTATATGCTTGCCAAACGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCACAGATTCTTCTGTATTCAAAAGTATATGCTTGCCAAACGCAG  539

seq1  AAATGAGACAGGTTTTCAAACTTGGTTTCAATGTGATTTCAGCCTAGCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGACAGGTTTTCAAACTTGGTTTCAATGTGATTTCAGCCTAGCCC  589

seq1  TAAAAAGGCTACATTTCCTTTAGAACAGTAACATAGATTATATTTCTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGCTACATTTCCTTTAGAACAGTAACATAGATTATATTTCTACA  639

seq1  CATCTGGAACTACTGTGTCTTTCTAGAGATTTGTAACAAAACTTTTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAACTACTGTGTCTTTCTAGAGATTTGTAACAAAACTTTTCTTC  689

seq1  CTTCAGCTATGAGGGGGGAAAGGTGCCTATAATAATTTAAAGATATAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTATGAGGGGGGAAAGGTGCCTATAATAATTTAAAGATATAGCT  739

seq1  CATCAAATGTAACTCAGATGATAATTTATAATTTGCAGTTATATAATTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGTAACTCAGATGATAATTTATAATTTGCAGTTATATAATTAG  789

seq1  CAGTTTCCTGAGCTATTACAATAAGGTAATACAGACTAAGTCCCCCCCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTGAGCTATTACAATAAGGTAATACAGACTAAGTCCCCCCCCC  839

seq1  CGCCCCCGCCCCAAGTAACAGAAATGTATTCTTACAGTTCTACAGGCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCGCCCCAAGTAACAGAAATGTATTCTTACAGTTCTACAGGCTAA  889

seq1  ATATAAGGGATCATAGCACAGTTTATAGATGGATGCTTTCTCTGACCCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGGATCATAGCACAGTTTATAGATGGATGCTTTCTCTGACCCAT  939

seq1  CCATGGTCTTCCTACCTTACCTGTGTTCCCATTTTTTTCTTCCCAATCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCTTCCTACCTTACCTGTGTTCCCATTTTTTTCTTCCCAATCTG  989

seq1  GCTGCACCCAGCTGCACTTATTTTACTGTTTTATTTACAGGCCCTAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCCAGCTGCACTTATTTTACTGTTTTATTTACAGGCCCTAATTC  1039

seq1  TAGATAAAGCTACATTCTGAAGTATTAGACGTGAAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAGCTACATTCTGAAGTATTAGACGTGAAGAATTC  1080