BAC Information

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BAC

Clone NameB6Ng01-156I20
Chromosome16 (Build37)
Map Location 65,312,226 - 65,486,787
singlet/doubletdoublet
Overlap genenone
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156I20.bB6Ng01-156I20.g
ACCDH951026DH951027
length1,0961,053
definitionDH951026|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I20, 5' end.DH951027|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,485,675 - 65,486,787)(65,312,226 - 65,313,041)
sequence
gaattccccaggaaagactcaaattaataggtgagctgaattttgcttga
tttacaaatacaggctaaatataatgacccatttcctgtacgtcttgcgt
aatagtagaaaaacagacaatagagtcagagacccactccttcctgaagg
agacgccaccctccgtgtgccttgcttagttgaccttgttctcctggtgt
cctttatgccctctgagtcttacaagcttttttcctcctcttccacagga
ttacttgagcttagagcatccctggccaaggaatttgggcctgcactaga
cagggaaaggagaaagaaggaagaggacacttagatcctgtcttagaggc
tctagaaaggatgcatttctgcttgttccccgacttgtcctgggacccag
tgtgcagccgaccgcactgtaccagccgcagtccaccagggatcagcgct
ggagcctctggaacactgaggtgaaaacagtgccatcctaagccagttag
cttgtgggttatgacgtggctcttagagcagtgactgacacatggaaatt
cttaaaaaaaattttccagtgcaaaaggggaagaaaccactttaaaaatg
aacagtaatgtaagtgcatgaaactgatcttcaatctgtttcagtgaata
tttttatgagttttatatatccaattacagaagatttggtcctttggcaa
aaatgcttgattttttttttaaacattctattattgacaccctaggattt
gtcaccaaaccaccatactgtataactatatactcctttcccttctttct
tccccttttgcttttccttctcttcctctcttcccaatttctcctccctc
cttccctttcttcctcccttccttccttccttcctccctccctccctcac
tcccttccttcctacctcccttcttccttctttcctccttctttgtggag
tccagtggggctgattatatagctatatctattctgagttcctaactagt
ttctttatagcacatgccaattgaccagtgtctagttttcttttctttag
gtattttcataattttcaggtttgcttgtgagcatagaattttttc
gaattcttcacttctcttcccatgtcttctgtctgaagcttgtagtttgt
gatctgtcagttatgtgttgtctgtctgctgtgcctctcttgcttatgtg
tgtctaacaagtgcctttctgtttctgttcctaacaaagggctttgctgt
atactcactgagcagcctagaaaacatggtataggaaaaaacaaggaatt
ctttacagagatctttaacagaattccacaagagaagttactttgctaat
ttcaactgagccagagaagcactcagaaccacacagatgttattaaccta
tatccacatgttgcatccaacatttatggaatatttgttttgtttgaagg
tgcttattacttgttggatacttgtcagaaaataactatcatatatatgc
aatatatatatatatatatatatatatatatatatatatatatacctcag
tatacatagacacacagacacacacatctggtttggaacatggaagagta
cacagcttaacattaaaactgtgcccttaagcttctgttttataaactga
ctatatggccagtccaaagcatagtaaaaatgattacattgtcttcttaa
aggcaatttgatcttgagcaggctgagtacacagtaagatagcagactga
gtatattatcttaagtgatctcaaagcactttattaacttggtttcaagg
ctgggcagaagttcagtcagtctttctaagggtatttctagacaaaaata
ccatgtacttattcttacacacactcacatccacacaggtgcaaagaaag
tcattgactgttggttatatgaactgttttaaaagataaaattgggtttt
gtatgacaaatgagggggcttgcctcgtgagtaggattgattgactctca
gcagtcattcagttgcctgcagctctttgtctattcgaggaccttttctg
agatgtcctctatcaacatgatctcctcacctggtgctgcactgattttc
actattgggaggtgacctgctgtgagagatttcatggcttcagcttttat
gcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65485675_65486787
seq2: B6Ng01-156I20.b_44_1139 (reverse)

seq1  GAAAAAATTCTATGGCCTTCACAAAGGCAAAACCTGAAAATTATAGAAAT  50
      ||||||||||||||    ||||||  || |||||||||||||||  ||||
seq2  GAAAAAATTCTATG---CTCACAA--GC-AAACCTGAAAATTATGAAAAT  44

seq1  AACTTAAAAGAAAGGAAAAACTAGACACTGGTCAAATTGGCATGTGCTTA  100
      | ||  ||||||| | ||||||||||||||||| ||||||||||||| ||
seq2  ACCT--AAAGAAAAG-AAAACTAGACACTGGTC-AATTGGCATGTGC-TA  89

seq1  TAAAGAAACTAGTTAAGGAACTTCAGAATAGATATAGCTATATAATCAGC  150
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  TAAAGAAACTAGTT-AGGAAC-TCAGAATAGATATAGCTATATAATCAGC  137

seq1  CCCACTGGACTCCACAAAAGGAAGGAAGGAAAGAAGGAAGGAAGGGAGGT  200
      ||||||||||||||||||  ||||| ||||||||||||| ||||||||||
seq2  CCCACTGGACTCCACAAA--GAAGG-AGGAAAGAAGGAA-GAAGGGAGGT  183

seq1  AGGAAGGAAGGGAGTGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGGAGTGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGGAG  233

seq1  GAAGAAAGGGAAGGAGGGAGGAGAAATTGGGAAGAGAGGAAGAGAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGAAGGAGGGAGGAGAAATTGGGAAGAGAGGAAGAGAAGGAA  283

seq1  AAGCAAAAGGGGAAGAAAGAAGGGAAAGGAGTATATAGTTATACAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGGGGAAGAAAGAAGGGAAAGGAGTATATAGTTATACAGTATG  333

seq1  GTGGTTTGGTGACAAATCCTAGGGTGTCAATAATAGAATGTTTAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGGTGACAAATCCTAGGGTGTCAATAATAGAATGTTTAAAAAAA  383

seq1  AAATCAAGCATTTTTGCCAAAGGACCAAATCTTCTGTAATTGGATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGCATTTTTGCCAAAGGACCAAATCTTCTGTAATTGGATATATA  433

seq1  AAACTCATAAAAATATTCACTGAAACAGATTGAAGATCAGTTTCATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATAAAAATATTCACTGAAACAGATTGAAGATCAGTTTCATGCAC  483

seq1  TTACATTACTGTTCATTTTTAAAGTGGTTTCTTCCCCTTTTGCACTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTACTGTTCATTTTTAAAGTGGTTTCTTCCCCTTTTGCACTGGAA  533

seq1  AATTTTTTTTAAGAATTTCCATGTGTCAGTCACTGCTCTAAGAGCCACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTAAGAATTTCCATGTGTCAGTCACTGCTCTAAGAGCCACGT  583

seq1  CATAACCCACAAGCTAACTGGCTTAGGATGGCACTGTTTTCACCTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCCACAAGCTAACTGGCTTAGGATGGCACTGTTTTCACCTCAGTG  633

seq1  TTCCAGAGGCTCCAGCGCTGATCCCTGGTGGACTGCGGCTGGTACAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGCTCCAGCGCTGATCCCTGGTGGACTGCGGCTGGTACAGTGC  683

seq1  GGTCGGCTGCACACTGGGTCCCAGGACAAGTCGGGGAACAAGCAGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGCTGCACACTGGGTCCCAGGACAAGTCGGGGAACAAGCAGAAATG  733

seq1  CATCCTTTCTAGAGCCTCTAAGACAGGATCTAAGTGTCCTCTTCCTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTCTAGAGCCTCTAAGACAGGATCTAAGTGTCCTCTTCCTTCTT  783

seq1  TCTCCTTTCCCTGTCTAGTGCAGGCCCAAATTCCTTGGCCAGGGATGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCCCTGTCTAGTGCAGGCCCAAATTCCTTGGCCAGGGATGCTC  833

seq1  TAAGCTCAAGTAATCCTGTGGAAGAGGAGGAAAAAAGCTTGTAAGACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCAAGTAATCCTGTGGAAGAGGAGGAAAAAAGCTTGTAAGACTCA  883

seq1  GAGGGCATAAAGGACACCAGGAGAACAAGGTCAACTAAGCAAGGCACACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATAAAGGACACCAGGAGAACAAGGTCAACTAAGCAAGGCACACG  933

seq1  GAGGGTGGCGTCTCCTTCAGGAAGGAGTGGGTCTCTGACTCTATTGTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGCGTCTCCTTCAGGAAGGAGTGGGTCTCTGACTCTATTGTCTG  983

seq1  TTTTTCTACTATTACGCAAGACGTACAGGAAATGGGTCATTATATTTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACTATTACGCAAGACGTACAGGAAATGGGTCATTATATTTAGC  1033

seq1  CTGTATTTGTAAATCAAGCAAAATTCAGCTCACCTATTAATTTGAGTCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTGTAAATCAAGCAAAATTCAGCTCACCTATTAATTTGAGTCTT  1083

seq1  TCCTGGGGAATTC  1113
      |||||||||||||
seq2  TCCTGGGGAATTC  1096

seq1: chr16_65312226_65313041
seq2: B6Ng01-156I20.g_302_1119

seq1  AGTTACTTTGCTAATTTCAACTGAGCCAGAGAAGCACTCAGAACCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTGCTAATTTCAACTGAGCCAGAGAAGCACTCAGAACCACACA  50

seq1  GATGTTATTAACCTATATCCACATGTTGCATCCAACATTTATGGAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATTAACCTATATCCACATGTTGCATCCAACATTTATGGAATATT  100

seq1  TGTTTTGTTTGAAGGTGCTTATTACTTGTTGGATACTTGTCAGAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTGAAGGTGCTTATTACTTGTTGGATACTTGTCAGAAAATAA  150

seq1  CTATCATATATATGCAATATATATATATATATATATATATATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATATATATGCAATATATATATATATATATATATATATATATATAT  200

seq1  ATATATATACCTCAGTATACATAGACACACAGACACACACATCTGGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACCTCAGTATACATAGACACACAGACACACACATCTGGTTTG  250

seq1  GAACATGGAAGAGTACACAGCTTAACATTAAAACTGTGCCCTTAAGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGAAGAGTACACAGCTTAACATTAAAACTGTGCCCTTAAGCTTC  300

seq1  TGTTTTATAAACTGACTATATGGCCAGTCCAAAGCATAGTAAAAATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATAAACTGACTATATGGCCAGTCCAAAGCATAGTAAAAATGATT  350

seq1  ACATTGTCTTCTTAAAGGCAATTTGATCTTGAGCAGGCTGAGTACACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCTTCTTAAAGGCAATTTGATCTTGAGCAGGCTGAGTACACAGT  400

seq1  AAGATAGCAGACTGAGTATATTATCTTAAGTGATCTCAAAGCACTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCAGACTGAGTATATTATCTTAAGTGATCTCAAAGCACTTTATT  450

seq1  AACTTGGTTTCAAGGCTGGGCAGAAGTTCAGTCAGTCTTTCTAAAGGTAT  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACTTGGTTTCAAGGCTGGGCAGAAGTTCAGTCAGTCTTTCTAAGGGTAT  500

seq1  TTCTAGACAAAAATACCATGTACTTATTCTTACACACACTCACATCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACAAAAATACCATGTACTTATTCTTACACACACTCACATCCACA  550

seq1  CAGGTGCAA--GAAGTCATTGACTGTTGGTTATATGAACTGTTTT-AAAG  597
      |||||||||   ||||||||||||||||||||||||||||||||| ||||
seq2  CAGGTGCAAAGAAAGTCATTGACTGTTGGTTATATGAACTGTTTTAAAAG  600

seq1  ATAAAATT-GGTTTTGTATGACAAATGAGGGGGCTTGCC-CGTGAGGAGG  645
      |||||||| |||||||||||||||||||||||||||||| |||||| |||
seq2  ATAAAATTGGGTTTTGTATGACAAATGAGGGGGCTTGCCTCGTGAGTAGG  650

seq1  ATTGATTGACTCTCAGCAGTCATTCAGTTGCCTGCAGCTCTTTGTCTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGACTCTCAGCAGTCATTCAGTTGCCTGCAGCTCTTTGTCTATT  700

seq1  CGAGGACC-TTTCTGAGATGTCCCCTATCAACATGATCTCCTCACCTGGT  744
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  CGAGGACCTTTTCTGAGATGTCCTCTATCAACATGATCTCCTCACCTGGT  750

seq1  GCTGCCACTGAATTTTCACTTATTGTGTAGGTGACCATGCTGT-TGAGAG  793
      |||| ||||| |||||||| ||||| | |||||||| ||||||  |||| 
seq2  GCTG-CACTG-ATTTTCAC-TATTG-GGAGGTGACC-TGCTGTGAGAGAT  795

seq1  TTCATGGCTGCAGCTTTTATGCC  816
      ||||||||| |||||||||||||
seq2  TTCATGGCTTCAGCTTTTATGCC  818