BAC Information

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BAC

Clone NameB6Ng01-156N17
Chromosome16 (Build37)
Map Location 36,156,576 - 36,309,166
singlet/doubletdoublet
Overlap geneStfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324
Upstream geneAdcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta
Downstream geneLOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N17.bB6Ng01-156N17.g
ACCDH951252DH951253
length1,134970
definitionDH951252|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N17, 5' end.DH951253|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,156,576 - 36,157,707)(36,308,194 - 36,309,166)
sequence
gaattcttcaagaattaacctatttagaaacttaggttatgtttgtcctt
cctcttatggcacaacatagtaacattattggcacagagattgcagagag
gaaccatgctcaccacacctgagtcttggcacacccatttgctcacttcc
cccaactcatttccccccaactctactcagcatttcccctcagggatgca
gtaagacttgcctgagatcacactcattcccccagttcctctgatactgt
ggaaataatacatgatagaggaggagtttacagaaacctttaaaaccctg
agtctctttgcttgctggatcatttcttctcagcaccctgcccagcaatg
actgaatacaccagaaaaataaagggaggcttgtcagaggccagacctgc
cacatcagaaattcaggagattgctgacaaggtgagtccatgtatttcag
caaaaaggttgatcccaaatcaaaccttcataatttgattcacattttga
cattgcagtaagagtgtgggatatcacagaaaccagaaatatatgggttt
tgttcaaactttggtacagctaaatgtggaacattaagccagagtgcctt
taacatttcaagataaagtcggccaagccatactctttactgcagcctta
ctttccccagagcttgaaactgaattcatcattttggatggtctctgtgt
ttcacatgtctgatcccagaagctgcaattactgatggaattttccaatc
ccactaggtgaaactatgtgtgaaggcacttaagtttattaaggattcct
gaactgattccaggatgcaatgcccaccaaaccatcacattcaaaacaga
actcaatgtttctagcaagttattacatgttgcttaactatcatctaaat
aataaaaatgtaacatattatgttttttataaaagggaaaaaggcatgca
aattatagaggtaggtttgcaatttgtcacctgattttctacgatcatgt
tttcctctttgaaacaaagtcatgctggagttcaagatagttggcttgtt
gactgcctgtttgtttgtttctgcattttgtttcccaccgtagaacttgc
tagaggactattcctgcaagataccaaggctagc
gaattctaatgaagatttaaaagatttaattttcctcgaaagtaaaatgc
tccaagatatttattgaaataaacctatgagtgagaactgtttagcctta
aatacgcagtcattgaattttaggactgcgaccccctctagaatgttcag
tgccttaagtatgaaggttcccatctgttctattcacataaaatctgatg
gtgcctagcatggtggcacatgaccttaatccaagcacttgagaagttga
gtcagcaggtatgccttgagtttgaggctagcctgagttacctgcatgct
agaccatctagcaagaccaagtctcaaacaaacacacaaacaaacaaaca
aaaagacaaaacagatcttgttctccaggatgatttgctttcaaggttaa
aagcaatgtgctgtaagaaaagaagctgacagattgcaaacctccctcca
aaatttgcatgcatttctcctttgtaaaacaggcaacatgatacatcttt
ttatatagatgatagttaagcagcatgtattaacttgctagaaactttta
gttgtattttgaatgtgatggattgatggatgtagaatcatggaatcagc
tcagagttccttaacgaccttaggagcctccatatatcagcttcaactag
agtgattggaaaattccatcagtcattagagctcctgggatcagacatgt
gaggtgtagagatgatccagcacgaattcaccttcagctactggggaaac
tgaggctgcagtaaagagtgtggcttggtcgattttactcttggggtctt
aaaatttctctaaaaggctcaatgtccacttttatctgtataaatgtctg
aacaaaatcatgtattcatggttctgtcattcccatactcttaacacagg
cccaacttgtaaatccaatgtggaagtttggttggggatcacatctattc
ctgaaagtacatcgactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36156576_36157707
seq2: B6Ng01-156N17.b_45_1178

seq1  GAATTCTTCAAGAATTAACCTATTTAGAAACTTAGGTTATGTTTGTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAGAATTAACCTATTTAGAAACTTAGGTTATGTTTGTCCTT  50

seq1  CCTCTTATGGCACAACATAGTAACATTATTGGCACAGAGATTGCAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTATGGCACAACATAGTAACATTATTGGCACAGAGATTGCAGAGAG  100

seq1  GAACCATGCTCACCACACCTGAGTCTTGGCACACCCATTTGCTCACTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGCTCACCACACCTGAGTCTTGGCACACCCATTTGCTCACTTCC  150

seq1  CCCAACTCATTTCCCCCCAACTCTACTCAGCATTTCCCCTCAGGGATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCATTTCCCCCCAACTCTACTCAGCATTTCCCCTCAGGGATGCA  200

seq1  GTAAGACTTGCCTGAGATCACACTCATTCCCCCAGTTCCTCTGATACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTTGCCTGAGATCACACTCATTCCCCCAGTTCCTCTGATACTGT  250

seq1  GGAAATAATACATGATAGAGGAGGAGTTTACAGAAACCTTTAAAACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATACATGATAGAGGAGGAGTTTACAGAAACCTTTAAAACCCTG  300

seq1  AGTCTCTTTGCTTGCTGGATCATTTCTTCTCAGCACCCTGCCCAGCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTTGCTTGCTGGATCATTTCTTCTCAGCACCCTGCCCAGCAATG  350

seq1  ACTGAATACACCAGAAAAATAAAGGGAGGCTTGTCAGAGGCCAGACCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATACACCAGAAAAATAAAGGGAGGCTTGTCAGAGGCCAGACCTGC  400

seq1  CACATCAGAAATTCAGGAGATTGCTGACAAGGTGAGTCCATGTATTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGAAATTCAGGAGATTGCTGACAAGGTGAGTCCATGTATTTCAG  450

seq1  CAAAAAGGTTGATCCCAAATCAAACCTTCATAATTTGATTCACATTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGTTGATCCCAAATCAAACCTTCATAATTTGATTCACATTTTGA  500

seq1  CATTGCAGTAAGAGTGTGGGATATCACAGAAACCAGAAATATATGGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGTAAGAGTGTGGGATATCACAGAAACCAGAAATATATGGGTTT  550

seq1  TGTTCAAACTTTGGTACAGCTAAATGTGGAACATTAAGCCAGAGTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAACTTTGGTACAGCTAAATGTGGAACATTAAGCCAGAGTGCCTT  600

seq1  TAACATTTCAAGATAAAGTCGGCCAAGCCATACTCTTTACTGCAGCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTCAAGATAAAGTCGGCCAAGCCATACTCTTTACTGCAGCCTTA  650

seq1  CTTTCCCCAGAGCTTGAAACTGAATTCATCATTTTGGATGGTCTCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCAGAGCTTGAAACTGAATTCATCATTTTGGATGGTCTCTGTGT  700

seq1  TTCACATGTCTGATCCCAGAAGCTGCAATTACTGATGGAATTTTCCAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGTCTGATCCCAGAAGCTGCAATTACTGATGGAATTTTCCAATC  750

seq1  CCACTAGGTGAAACTATGTGTGAAGGCACTTAAGTTTATTAAGGATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGTGAAACTATGTGTGAAGGCACTTAAGTTTATTAAGGATTCCT  800

seq1  GAACTGATTCCAGGATGCAATGCCCACCAAACCATCACATTCAAAACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATTCCAGGATGCAATGCCCACCAAACCATCACATTCAAAACAGA  850

seq1  ACTCAATGTTTCTAGCAAGTTATTACATGTTGCTTAACTATCATCTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGTTTCTAGCAAGTTATTACATGTTGCTTAACTATCATCTAAAT  900

seq1  AATAAAAATGTAACATATTATGTTTTTTATAAAAGGGAAAAAGGCATGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATGTAACATATTATGTTTTTTATAAAAGGGAAAAAGGCATGCA  950

seq1  AATTATAGAGGTAGGTTTGCAATTTGTCACCTGATTTTCTACGATCATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGAGGTAGGTTTGCAATTTGTCACCTGATTTTCTACGATCATGT  1000

seq1  TTTCCTCTTTGAAACAAAGTCATGCTGGAGTCCAAGATTAGTTTGGCTTG  1050
      ||||||||||||||||||||||||||||||| ||||| ||| ||||||||
seq2  TTTCCTCTTTGAAACAAAGTCATGCTGGAGTTCAAGA-TAG-TTGGCTTG  1048

seq1  TTGTCTGCTTGTTTGTTTGTTTCTGCA-TTTGTTTCACA-CGTAG-ACTT  1097
      ||| |||| |||||||||||||||||| |||||||| || ||||| ||||
seq2  TTGACTGCCTGTTTGTTTGTTTCTGCATTTTGTTTCCCACCGTAGAACTT  1098

seq1  GCTAGATGACTA-TCCTGCAAGTAACCCAGGCTAGC  1132
      |||||| ||||| |||||||||  ||| ||||||||
seq2  GCTAGAGGACTATTCCTGCAAGATACCAAGGCTAGC  1134

seq1: chr16_36308194_36309166
seq2: B6Ng01-156N17.g_70_1039 (reverse)

seq1  GTGAGTCGATGTAC-TTCAGGAAAAGATGTGATCCCAAACCAAACTTCCA  49
      |||||||||||||| |||||||| |||||||||||| |||||||||||| 
seq2  GTGAGTCGATGTACTTTCAGGAATAGATGTGATCCCCAACCAAACTTCC-  49

seq1  ACATTGGATTTACAAGTTGGCCCTGTGTTAAGAGTATGGGAAATGACAGA  99
      |||||||||||||||||||| ||||||||||||||||||| |||||||| 
seq2  ACATTGGATTTACAAGTTGGGCCTGTGTTAAGAGTATGGG-AATGACAG-  97

seq1  AACCATGAATACATGATTTTGTTCAGACATTTATACAGATAAAAGTGGAA  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACCATGAATACATGATTTTGTTCAGACATTTATACAGATAAAAGTGG-A  146

seq1  CATTGAGCCTTTTAGAGAAATTTTAAGACCCCAAGAGTAAAATCGACCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCCTTTTAGAGAAATTTTAAGACCCCAAGAGTAAAATCGACCAA  196

seq1  GCCACACTCTTTACTGCAGCCTCAGTTTCCCCAGTAGCTGAAGGTGAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTCTTTACTGCAGCCTCAGTTTCCCCAGTAGCTGAAGGTGAATT  246

seq1  CGTGCTGGATCATCTCTACACCTCACATGTCTGATCCCAGGAGCTCTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGGATCATCTCTACACCTCACATGTCTGATCCCAGGAGCTCTAAT  296

seq1  GACTGATGGAATTTTCCAATCACTCTAGTTGAAGCTGATATATGGAGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGGAATTTTCCAATCACTCTAGTTGAAGCTGATATATGGAGGCT  346

seq1  CCTAAGGTCGTTAAGGAACTCTGAGCTGATTCCATGATTCTACATCCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTCGTTAAGGAACTCTGAGCTGATTCCATGATTCTACATCCATC  396

seq1  AATCCATCACATTCAAAATACAACTAAAAGTTTCTAGCAAGTTAATACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCACATTCAAAATACAACTAAAAGTTTCTAGCAAGTTAATACAT  446

seq1  GCTGCTTAACTATCATCTATATAAAAAGATGTATCATGTTGCCTGTTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTAACTATCATCTATATAAAAAGATGTATCATGTTGCCTGTTTTA  496

seq1  CAAAGGAGAAATGCATGCAAATTTTGGAGGGAGGTTTGCAATCTGTCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGAAATGCATGCAAATTTTGGAGGGAGGTTTGCAATCTGTCAGC  546

seq1  TTCTTTTCTTACAGCACATTGCTTTTAACCTTGAAAGCAAATCATCCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTACAGCACATTGCTTTTAACCTTGAAAGCAAATCATCCTGG  596

seq1  AGAACAAGATCTGTTTTGTCTTTTTGTTTGTTTGTTTGTGTGTTTGTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGATCTGTTTTGTCTTTTTGTTTGTTTGTTTGTGTGTTTGTTTG  646

seq1  AGACTTGGTCTTGCTAGATGGTCTAGCATGCAGGTAACTCAGGCTAGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGTCTTGCTAGATGGTCTAGCATGCAGGTAACTCAGGCTAGCCT  696

seq1  CAAACTCAAGGCATACCTGCTGACTCAACTTCTCAAGTGCTTGGATTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAAGGCATACCTGCTGACTCAACTTCTCAAGTGCTTGGATTAAG  746

seq1  GTCATGTGCCACCATGCTAGGCACCATCAGATTTTATGTGAATAGAACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGCCACCATGCTAGGCACCATCAGATTTTATGTGAATAGAACAG  796

seq1  ATGGGAACCTTCATACTTAAGGCACTGAACATTCTAGAGGGGGTCGCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAACCTTCATACTTAAGGCACTGAACATTCTAGAGGGGGTCGCAGT  846

seq1  CCTAAAATTCAATGACTGCGTATTTAAGGCTAAACAGTTCTCACTCATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATTCAATGACTGCGTATTTAAGGCTAAACAGTTCTCACTCATAG  896

seq1  GTTTATTTCAATAAATATCTTGGAGCATTTTACTTTCGAGGAAAATTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTCAATAAATATCTTGGAGCATTTTACTTTCGAGGAAAATTAAA  946

seq1  TCTTTTAAATCTTCATTAGAATTC  973
      ||||||||||||||||||||||||
seq2  TCTTTTAAATCTTCATTAGAATTC  970