BAC Information

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BAC

Clone NameB6Ng01-157N23
Chromosome16 (Build37)
Map Location 53,515,586 - 53,644,885
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157N23.bB6Ng01-157N23.g
ACCDH951987DH951988
length9101,125
definitionDH951987|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N23, 5' end.DH951988|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,515,586 - 53,516,501)(53,643,745 - 53,644,885)
sequence
gaattccaaaggcacttgtaccaatttcttcattcatacaatcaggaaaa
cattcagaatatcattttttttaatttttcattattgtgactatgtacat
aatcatgatgtgtgttggggaggcctgcatgccccagtgcaatgcacgga
ggtcacatgataactgtgttaactttgctctatcctgccactttttaaac
cttgtcttacatcttgaactcagaaaaattattgactttagatagatttt
acccagtgggtcattttgctggcccagagatatattttgtatagttattt
ataatatatttgatatatgttatttacaagtttctcctggtgtagacaat
tatagaaataaaagtaaatttgatttctttctactgaaagctttctataa
taagatttcaatggtggattaaaaaggagaaacagatctctttacagatg
gttgtgacccaccatgtggttgccagaaattgaactcaagaccgctggaa
gagcagtcagtgctcttaaccgctgagccatctctctcctatggaacaca
gggcccccaatgaaagagctagagaaagtacccaaggagctaaaggggtc
tgcaaccctataggaggaacaacaatatgaactaaccagtatcccccaga
gtttgtgtctctagttgcatatgtagcagaggatggcccagtcggccatc
aatgggaggagtgttccttggtcttgctaagattatatgccccagtacag
gagaatgccagggccaggaagcaggagtgggttgattggggagcagggtg
gggcagggtataggggactttcggataggaaactaggaaggagatagcat
ttgaatgtaaatgaagaaatatctaataaaaataaaacctaaatatatcg
tatatgcaaa
gaattcatttattttatttatttatttttttgttcagaaagaaaatttga
agccaaaagggcctctcttttaattcctatatgattttttagataagaat
ggcagtaattgctgggcagtgctggcccacaccattaatcctagcacttg
ggaggcaagacttctgagttcgaggccagcctggtctacagagtgagttg
caggactgccagggctacacagagaatcactgtcttgaaaaacaaaaaac
aaaacaaaaaacaaacaaacaaaaaagaatgacagtaaaaaaagtatgac
agtaataaaatacaaactctttcccttccaactccccctgtgtccctcct
aattcctctcaaattcattattttttctttagttattattgttacccatg
cagagatataacttgctgagtccatgttatgttatttatgtgtacatgtg
tttaggggcttatgactctggaatattagctggtgttgttattgtgcagt
ttttatttagaaaagtatactgctgcaactttcttgtcctatgtagaaga
tactatcttaaaacacacatgctggttcctggatcttacaaacttttgtc
ttcctcttcttggatattcactgaaatgaaatgcaccgtctgtatatcaa
ttgtgactaggcaattcattttcatgtattctcacattttgacaagttgc
aaatttctgtaatagttccaatctgttggaaaactcactttttactgatt
gtaatcatttttgtttcctcacagtgtggtcagtctacttttgggtcacc
atttcagaggtcccttaagcttatgcattatccttaatttattatgcaag
tttgactaattcaatcttcacttgtagatgacatgtaaaaatacaaccaa
gtctccatttttcgttttaatcctgtacttgccactacttccttcccttg
gcacttacattaaaaaaagacttgtctaacatagttgattgtgtgctgtc
tttcagtgtgaaagatccaaagatatcatataaaagtaagagttcaaatg
tgcaagaaaaaatctatgcatggcaatcaggtgctaataattgatgctca
agaatataaatatatgtcaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53515586_53516501
seq2: B6Ng01-157N23.b_46_954

seq1  GAATTCCAAAGGCACTTGTACCAATTTCTTCATTCATACAATCAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGCACTTGTACCAATTTCTTCATTCATACAATCAGGAAAA  50

seq1  CATTCAGAATATCATTTTTTTTAATTTTTCATTATTGTGACTATGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAATATCATTTTTTTTAATTTTTCATTATTGTGACTATGTACAT  100

seq1  AATCATGATGTGTGTTGGGGAGGCCTGCATGCCCCAGTGCAATGCACGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGATGTGTGTTGGGGAGGCCTGCATGCCCCAGTGCAATGCACGGA  150

seq1  GGTCACATGATAACTGTGTTAACTTTGCTCTATCCTGCCACTTTTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATGATAACTGTGTTAACTTTGCTCTATCCTGCCACTTTTTAAAC  200

seq1  CTTGTCTTACATCTTGAACTCAGAAAAATTATTGACTTTAGATAGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTACATCTTGAACTCAGAAAAATTATTGACTTTAGATAGATTTT  250

seq1  ACCCAGTGGGTCATTTTGCTGGCCCAGAGATATATTTTGTATAGTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGGGTCATTTTGCTGGCCCAGAGATATATTTTGTATAGTTATTT  300

seq1  ATAATATATTTGATATATGTTATTTACAAGTTTCTCCTGGTGTAGACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATTTGATATATGTTATTTACAAGTTTCTCCTGGTGTAGACAAT  350

seq1  TATAGAAATAAAAGTAAATTTGATTTCTTTCTACTGAAAGCTTTCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATAAAAGTAAATTTGATTTCTTTCTACTGAAAGCTTTCTATAA  400

seq1  TAAGATTTCAATGGTGGATTAAAAAGGAGAAACAGATCTCTTTACAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTCAATGGTGGATTAAAAAGGAGAAACAGATCTCTTTACAGATG  450

seq1  GTTGTGACCCACCATGTGGTTGCCAGAAATTGAACTCAAGACCGCTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACCCACCATGTGGTTGCCAGAAATTGAACTCAAGACCGCTGGAA  500

seq1  GAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCTCCTATGGAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCTCCTATGGAACACA  550

seq1  GGGCCCCCAATGAAAGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCCAATGAAAGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTC  600

seq1  TGCAACCCTATAGGAGGAACAACAATATGAACTAACCAGTATCCCCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCTATAGGAGGAACAACAATATGAACTAACCAGTATCCCCCAGA  650

seq1  GTTTGTGTCTCTAGTTGCATATGTAGCAGAGGATGGCCCAGTCGGCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTCTCTAGTTGCATATGTAGCAGAGGATGGCCCAGTCGGCCATC  700

seq1  AATGGGAGGAGTGTTCCTTGGTCTTGCTAAGATTATATGCCCCAGTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGAGTGTTCCTTGGTCTTGCTAAGATTATATGCCCCAGTACAG  750

seq1  GAGAATGCCAGGGCCAGGAAGCAGGAGTGGGTTGATTGGGGAGCAGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCCAGGGCCAGGAAGCAGGAGTGGGTTGATTGGGGAGCAGGGTG  800

seq1  GGGCAGGGTATAGGGGACTTTCGGAGAGGAAACTAGGAAAGGAGATAGCA  850
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  GGGCAGGGTATAGGGGACTTTCGGATAGGAAACTAGG-AAGGAGATAGCA  849

seq1  TTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATAAAAACCTAAATA  900
      |||| ||||||||||||| ||||||||||||||||   ||||||||||||
seq2  TTTG-AATGTAAATGAAG-AAATATCTAATAAAAA--TAAAACCTAAATA  895

seq1  TAATCGTATAATGCAA  916
      | ||||||| ||||||
seq2  T-ATCGTAT-ATGCAA  909

seq1: chr16_53643745_53644885
seq2: B6Ng01-157N23.g_65_1189 (reverse)

seq1  TCTTCCTGACATAT-TTTATATCTTTAGAAGCAACAAATAAATAGCAACT  49
      |||||||||||||| |||||||  ||   |||| | ||| | ||||| ||
seq2  TCTTCCTGACATATATTTATATTCTT--GAGCATC-AATTATTAGCACCT  47

seq1  GATTG-CATGCATAGATTTTTTTCTTTGCACATTTTGAACTTCCTTACTT  98
      ||||| ||||||||||||||||   ||||||| ||||||||  ||||| |
seq2  GATTGCCATGCATAGATTTTTT--CTTGCACA-TTTGAACT--CTTAC-T  91

seq1  TTTATATGATATCTTTGGGAATTCTTTCACAACTGAAAGACAGCACACAA  148
      ||||||||||||||||||    |||||||| ||||||||||||||||| |
seq2  TTTATATGATATCTTTGG---ATCTTTCAC-ACTGAAAGACAGCACAC-A  136

seq1  ATCAACTATGTTAGACAAGTCTTTTTTTAATGTAAGTGCCAAAGGGAAAG  198
      ||||||||||||||||||||||||||||||||||||||||||  || |||
seq2  ATCAACTATGTTAGACAAGTCTTTTTTTAATGTAAGTGCCAA--GGGAAG  184

seq1  GAAGTAAGTGGGCAAGTACAGGATTAAAACGAAAAATGGAGACTTGGTTG  248
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGT-AGT-GGCAAGTACAGGATTAAAACGAAAAATGGAGACTTGGTTG  232

seq1  TATTTTTACATGTCATCTACAAGTGAAGATTGAATTAGTCAAACTTGCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACATGTCATCTACAAGTGAAGATTGAATTAGTCAAACTTGCAT  282

seq1  AATAAATTAAGGATAATGCATAAGCTTAAGGGACCTCTGAAATGGTGACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAAGGATAATGCATAAGCTTAAGGGACCTCTGAAATGGTGACC  332

seq1  CAAAAGTAGACTGACCACACTGTGAGGAAACAAAAATGATTACAATCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAGACTGACCACACTGTGAGGAAACAAAAATGATTACAATCAGT  382

seq1  AAAAAGTGAGTTTTCCAACAGATTGGAACTATTACAGAAATTTGCAACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAGTTTTCCAACAGATTGGAACTATTACAGAAATTTGCAACTT  432

seq1  GTCAAAATGTGAGAATACATGAAAATGAATTGCCTAGTCACAATTGATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATGTGAGAATACATGAAAATGAATTGCCTAGTCACAATTGATAT  482

seq1  ACAGACGGTGCATTTCATTTCAGTGAATATCCAAGAAGAGGAAGACAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGGTGCATTTCATTTCAGTGAATATCCAAGAAGAGGAAGACAAAA  532

seq1  GTTTGTAAGATCCAGGAACCAGCATGTGTGTTTTAAGATAGTATCTTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAGATCCAGGAACCAGCATGTGTGTTTTAAGATAGTATCTTCTA  582

seq1  CATAGGACAAGAAAGTTGCAGCAGTATACTTTTCTAAATAAAAACTGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACAAGAAAGTTGCAGCAGTATACTTTTCTAAATAAAAACTGCAC  632

seq1  AATAACAACACCAGCTAATATTCCAGAGTCATAAGCCCCTAAACACATGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAACACCAGCTAATATTCCAGAGTCATAAGCCCCTAAACACATGT  682

seq1  ACACATAAATAACATAACATGGACTCAGCAAGTTATATCTCTGCATGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAATAACATAACATGGACTCAGCAAGTTATATCTCTGCATGGGT  732

seq1  AACAATAATAACTAAAGAAAAAATAATGAATTTGAGAGGAATTAGGAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATAACTAAAGAAAAAATAATGAATTTGAGAGGAATTAGGAGGG  782

seq1  ACACAGGGGGAGTTGGAAGGGAAAGAGTTTGTATTTTATTACTGTCATAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGGGAGTTGGAAGGGAAAGAGTTTGTATTTTATTACTGTCATAC  832

seq1  TTTTTTTACTGTCATTCTTTTTTGTTTGTTTGTTTTTTGTTTTGTTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACTGTCATTCTTTTTTGTTTGTTTGTTTTTTGTTTTGTTTTTT  882

seq1  GTTTTTCAAGACAGTGATTCTCTGTGTAGCCCTGGCAGTCCTGCAACTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGACAGTGATTCTCTGTGTAGCCCTGGCAGTCCTGCAACTCA  932

seq1  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAGTCTTGCCTCCCAAGTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAGTCTTGCCTCCCAAGTGC  982

seq1  TAGGATTAATGGTGTGGGCCAGCACTGCCCAGCAATTACTGCCATTCTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAATGGTGTGGGCCAGCACTGCCCAGCAATTACTGCCATTCTTA  1032

seq1  TCTAAAAAATCATATAGGAATTAAAAGAGAGGCCCTTTTGGCTTCAAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAATCATATAGGAATTAAAAGAGAGGCCCTTTTGGCTTCAAATT  1082

seq1  TTCTTTCTGAACAAAAAAATAAATAAATAAAATAAATGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGAACAAAAAAATAAATAAATAAAATAAATGAATTC  1125