BAC Information

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BAC

Clone NameB6Ng01-158H14
Chromosome16 (Build37)
Map Location 84,874,130 - 85,002,979
singlet/doubletdoublet
Overlap geneGm311, App
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158H14.bB6Ng01-158H14.g
ACCDH952413DH952414
length1,1241,154
definitionDH952413|Mus musculus domesticus DNA, BAC clone: B6Ng01-158H14, 5' end.DH952414|Mus musculus domesticus DNA, BAC clone: B6Ng01-158H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,001,834 - 85,002,979)(84,874,130 - 84,875,294)
sequence
gaattcacgcttttggctttcacgctattattttagtaaaattccaaagg
tttggtagtcctcttgtcaagatgtgctgtctctactacctcagtagctt
ctgtccgttttcacacagtcacttactttgcagtaaggagcatctctacc
agatgggtgaggcttgaggcagcatctcccaccccaagctgctgattctc
atgaagatgcggggagtcattttcccagctccccaactcttatgtgctgt
agtttgaaacaaaacctaaagagaagccctagcaaaaactgagtagggtg
tgaaagcagaccacagcggtggcaagatggtttcctggcacgaaacactg
caacagatgtgtcctgattccttttcttttctacagtcttgggaaaaacc
aatgattttggacggtaacaagggctggttactctatttttcacaagcag
ctgccttcaaggttctttttttaaaagggaaaaaaaatgtagagatattt
gccacccagaatatggaaatgaagccaaattaattttgaagtgtgcttcc
acaaggattaactggagatgagatgagcttgtttgcatgtgagtcagagt
tgggaacgaatgtaatttgcctcttgctgttcctctcagaaacaaattct
gcaatgtagtcactgaggaagcctcattattctttattaatagctcttag
gtagtgtgtcttgtgcagacactgttagctaggaaatcataaacagggag
ggtgtgtcaacagggctggagggatggctcagcacataatgctcttagag
aggtcccaggagaggttcccagcacccatgttggactgcttacagcttct
gtaacaccagctccaggcgatctaatgccctcttctggccatcacagcca
tgcacacacaagaacacacgtgagtgcactcacacacacacacacacaca
cactactcacacatacacccacacaagactttatattcttaattcatggt
cacctgttgtgttttattggagagtagcagaaaaggagagagacgaaata
ttgtgatgtatattagtcgtctcgtggctttggtgagcacaaatgttgtc
tggaagggtgctcttgggcccatg
gaattctttcacatcagtaccaagtaggagcttttcttaaacagttactg
tttgtttttaggtctccctgcatatgctcttgagtgagtgtgtatgtctg
tgcgcgtgtgtacacttgctacatgcctgtttgtggaggtcaaaggacaa
cttcatctaccatgtgagtcaggtcattggactcggtggcaagcatccct
ccccactgagccatcttgctgatccacaggtaggattttagtatgttggc
acgagcttcacgggctgatagcaggcagcactcagcaggaggttgagaca
gtttggactaatgaggtaaagcccaaatgtatcctagctttgtgctctgg
ggagtgagattccaggacacagttaggggaaaggttactggccaccgggc
tctgagaggctgcagaggggctgggtgatggctaagcagttaggcacact
ggctgttctttcataggtcccgagttcaagtgccagaaaccacatggtgg
ctcacaaacacctgtaatgggatttgatgacctcttctggcatgcaggtg
tacatgcagatagagcactcatacatataaatgaatgaatgaatcaatca
atcaatcaatcattcaatctttttaaaaaacagagtttgcagaacataga
acacagctatcaggtaccatttgagggggtacatagaaggttctcccaca
cttattggctcactgccttgaggacacagcctactgatgtctgaaaacgc
atacttgaatgaagctcatgaagcagacacaggatccatgctcccaccgc
tgcagaggaaaagtggtaattttgaggcattaaataatacaatctgaaag
tactataactggctatttatttgtgtcatgatttcttaaaaagaaatcca
cttttaaaaaccagaaggctagggatcaatttcacatgcttcatcaataa
atgtctcaaagtatttaatcatatctcatggccactcacatacaccttta
aaatatttttattcttttattgatttttgatagccttctcccctaattca
actggagttgtatgctgcttatctggctactatatgagtatatgtttaaa
taataaaatgaaccatggagagtgaggtctgggataaggcaggtctcagt
tcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85001834_85002979
seq2: B6Ng01-158H14.b_46_1169 (reverse)

seq1  CATGGGCCCACAGAGCCACCCCCTTCCACAGACACCATACTGTGCCTCCA  50
      |||||||||| ||||   | ||||||  |||||| |||  |||||   ||
seq2  CATGGGCCCA-AGAG---CACCCTTC--CAGACAACAT-TTGTGC--TCA  41

seq1  CCAAACTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTC  100
      |||||  | |       ||             | |   || |  | | ||
seq2  CCAAAGCCACGAGACGACT-----------AATATACATCACAATATTTC  80

seq1  TCTCTCTCTCTCTTTCT-CT-CTCTCTCATAAAACACAACAGGTTGACCC  148
        ||||||||  ||||| || |||||  ||||||||||||||| ||| ||
seq2  -GTCTCTCTCCTTTTCTGCTACTCTCCAATAAAACACAACAGG-TGA-CC  127

seq1  ATGAATTAAGAATATTAAGTCTTGTGTGTGTGTATGTGTGTGTGTGTGTG  198
      ||||||||||||||| |||||||||||| ||||||||||| ||  |||||
seq2  ATGAATTAAGAATATAAAGTCTTGTGTGGGTGTATGTGTGAGT-AGTGTG  176

seq1  TGTGTGTGTGTGTGTGTGAGTGCACTCACGTGTGTTCTTGTGTGTGCATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGAGTGCACTCACGTGTGTTCTTGTGTGTGCATG  226

seq1  GCTGTGATGGCCAGAAGAGGGCATTAGATCGCCTGGAGCTGGTGTTACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATGGCCAGAAGAGGGCATTAGATCGCCTGGAGCTGGTGTTACAG  276

seq1  AAGCTGTAAGCAGTCCAACATGGGTGCTGGGAACCTCTCCTGGGACCTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAAGCAGTCCAACATGGGTGCTGGGAACCTCTCCTGGGACCTCT  326

seq1  CTAAGAGCATTATGTGCTGAGCCATCCCTCCAGCCCTGTTGACACACCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCATTATGTGCTGAGCCATCCCTCCAGCCCTGTTGACACACCCT  376

seq1  CCCTGTTTATGATTTCCTAGCTAACAGTGTCTGCACAAGACACACTACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTATGATTTCCTAGCTAACAGTGTCTGCACAAGACACACTACCT  426

seq1  AAGAGCTATTAATAAAGAATAATGAGGCTTCCTCAGTGACTACATTGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTATTAATAAAGAATAATGAGGCTTCCTCAGTGACTACATTGCAG  476

seq1  AATTTGTTTCTGAGAGGAACAGCAAGAGGCAAATTACATTCGTTCCCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTCTGAGAGGAACAGCAAGAGGCAAATTACATTCGTTCCCAAC  526

seq1  TCTGACTCACATGCAAACAAGCTCATCTCATCTCCAGTTAATCCTTGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCACATGCAAACAAGCTCATCTCATCTCCAGTTAATCCTTGTGG  576

seq1  AAGCACACTTCAAAATTAATTTGGCTTCATTTCCATATTCTGGGTGGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACTTCAAAATTAATTTGGCTTCATTTCCATATTCTGGGTGGCAA  626

seq1  ATATCTCTACATTTTTTTTCCCTTTTAAAAAAAGAACCTTGAAGGCAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTACATTTTTTTTCCCTTTTAAAAAAAGAACCTTGAAGGCAGCT  676

seq1  GCTTGTGAAAAATAGAGTAACCAGCCCTTGTTACCGTCCAAAATCATTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAAAAATAGAGTAACCAGCCCTTGTTACCGTCCAAAATCATTGG  726

seq1  TTTTTCCCAAGACTGTAGAAAAGAAAAGGAATCAGGACACATCTGTTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCAAGACTGTAGAAAAGAAAAGGAATCAGGACACATCTGTTGCA  776

seq1  GTGTTTCGTGCCAGGAAACCATCTTGCCACCGCTGTGGTCTGCTTTCACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCGTGCCAGGAAACCATCTTGCCACCGCTGTGGTCTGCTTTCACA  826

seq1  CCCTACTCAGTTTTTGCTAGGGCTTCTCTTTAGGTTTTGTTTCAAACTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCAGTTTTTGCTAGGGCTTCTCTTTAGGTTTTGTTTCAAACTAC  876

seq1  AGCACATAAGAGTTGGGGAGCTGGGAAAATGACTCCCCGCATCTTCATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATAAGAGTTGGGGAGCTGGGAAAATGACTCCCCGCATCTTCATGA  926

seq1  GAATCAGCAGCTTGGGGTGGGAGATGCTGCCTCAAGCCTCACCCATCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCAGCTTGGGGTGGGAGATGCTGCCTCAAGCCTCACCCATCTGG  976

seq1  TAGAGATGCTCCTTACTGCAAAGTAAGTGACTGTGTGAAAACGGACAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCTCCTTACTGCAAAGTAAGTGACTGTGTGAAAACGGACAGAA  1026

seq1  GCTACTGAGGTAGTAGAGACAGCACATCTTGACAAGAGGACTACCAAACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGAGGTAGTAGAGACAGCACATCTTGACAAGAGGACTACCAAACC  1076

seq1  TTTGGAATTTTACTAAAATAATAGCGTGAAAGCCAAAAGCGTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTTTACTAAAATAATAGCGTGAAAGCCAAAAGCGTGAATTC  1124

seq1: chr16_84874130_84875294
seq2: B6Ng01-158H14.g_66_1219

seq1  GAATTCTTTCACATCAGTACCAAGTAGGAGCTTTTCTTAAACAGTTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACATCAGTACCAAGTAGGAGCTTTTCTTAAACAGTTACTG  50

seq1  TTTGTTTTTAGGTCTCCCTGCATATGCTCTTGAGTGAGTGTGTATGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAGGTCTCCCTGCATATGCTCTTGAGTGAGTGTGTATGTCTG  100

seq1  TGCGCGTGTGTACACTTGCTACATGCCTGTTTGTGGAGGTCAAAGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGTGTGTACACTTGCTACATGCCTGTTTGTGGAGGTCAAAGGACAA  150

seq1  CTTCATCTACCATGTGAGTCAGGTCATTGGACTCGGTGGCAAGCATCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTACCATGTGAGTCAGGTCATTGGACTCGGTGGCAAGCATCCCT  200

seq1  CCCCACTGAGCCATCTTGCTGATCCACAGGTAGGATTTTAGTATGTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGAGCCATCTTGCTGATCCACAGGTAGGATTTTAGTATGTTGGC  250

seq1  ACGAGCTTCACGGGCTGATAGCAGGCAGCACTCAGCAGGAGGTTGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCTTCACGGGCTGATAGCAGGCAGCACTCAGCAGGAGGTTGAGACA  300

seq1  GTTTGGACTAATGAGGTAAAGCCCAAATGTATCCTAGCTTTGTGCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGACTAATGAGGTAAAGCCCAAATGTATCCTAGCTTTGTGCTCTGG  350

seq1  GGAGTGAGATTCCAGGACACAGTTAGGGGAAAGGTTACTGGCCACCGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGATTCCAGGACACAGTTAGGGGAAAGGTTACTGGCCACCGGGC  400

seq1  TCTGAGAGGCTGCAGAGGGGCTGGGTGATGGCTAAGCAGTTAGGCACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGCTGCAGAGGGGCTGGGTGATGGCTAAGCAGTTAGGCACACT  450

seq1  GGCTGTTCTTTCATAGGTCCCGAGTTCAAGTGCCAGAAACCACATGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCTTTCATAGGTCCCGAGTTCAAGTGCCAGAAACCACATGGTGG  500

seq1  CTCACAAACACCTGTAATGGGATTTGATGACCTCTTCTGGCATGCAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAACACCTGTAATGGGATTTGATGACCTCTTCTGGCATGCAGGTG  550

seq1  TACATGCAGATAGAGCACTCATACATATAAATGAATGAATGAATCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCAGATAGAGCACTCATACATATAAATGAATGAATGAATCAATCA  600

seq1  ATCAATCAATCATTCAATCTTTTTAAAAAACAGAGTTTGCAGAACATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAATCATTCAATCTTTTTAAAAAACAGAGTTTGCAGAACATAGA  650

seq1  ACACAGCTATCAGGTACCATTTGAGGGGGTACATAGAAGGTTCTCCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTATCAGGTACCATTTGAGGGGGTACATAGAAGGTTCTCCCACA  700

seq1  CTTATTGGCTCACTGCCTTGAGGACACAGCCTACTGATGTCTGAAAACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGGCTCACTGCCTTGAGGACACAGCCTACTGATGTCTGAAAACGC  750

seq1  ATACTTGAATGAAGCTCAGGAAGCAGACACAGGATCCATGCTCCCACCGC  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATACTTGAATGAAGCTCATGAAGCAGACACAGGATCCATGCTCCCACCGC  800

seq1  TGCAGAGGAAAAGTGGTAATTTTGAGGCATTAAATAATACAATCTGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGAAAAGTGGTAATTTTGAGGCATTAAATAATACAATCTGAAAG  850

seq1  TACTATAACTGGCTATTAATTTGTGTCATGA-TTCTTAAAAAGAAATCCA  899
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TACTATAACTGGCTATTTATTTGTGTCATGATTTCTTAAAAAGAAATCCA  900

seq1  CTTTTAAAAACCAGAAGGCTAGGGATCAATTTCACATGC-TCATCAATAA  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTTAAAAACCAGAAGGCTAGGGATCAATTTCACATGCTTCATCAATAA  950

seq1  ATGTCTCAAAGTATTTAATCATATCTCATGGCCACTCACATACACCTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAAAGTATTTAATCATATCTCATGGCCACTCACATACACCTTTA  1000

seq1  AAATTATTTTTATTCTTTCTATTGAATTTTTGATAAGCCCTTCTCCCCTA  1048
      ||| |||||||||||||| ||||| ||||||||||   ||||||||||||
seq2  AAA-TATTTTTATTCTTT-TATTG-ATTTTTGATA--GCCTTCTCCCCTA  1045

seq1  ATTCAACTGGAGTTTGTATGCTGCTTATCTGGCTACTATTATTGAGTTAT  1098
      |||||||||||| ||||||||||||||||||||||||||   |||| |||
seq2  ATTCAACTGGAG-TTGTATGCTGCTTATCTGGCTACTAT--ATGAG-TAT  1091

seq1  ATGTCTAAATAATAAAAATGAAACCAT-GAGAGTGAGGTTTCTGGGATAA  1147
      |||| |||||||| |||||| |||||| ||||||||||  ||||||||||
seq2  ATGTTTAAATAAT-AAAATG-AACCATGGAGAGTGAGG--TCTGGGATAA  1137

seq1  GGCGAGGTCCCAGTTCCA  1165
      ||| ||||| ||||||||
seq2  GGC-AGGTCTCAGTTCCA  1154